Deformable M-Reps for 3D Medical Image Segmentation

M-reps (formerly called DSLs) are a multiscale medial means for modeling and rendering 3D solid geometry. They are particularly well suited to model anatomic objects and in particular to capture prior geometric information effectively in deformable models segmentation approaches. The representation is based on figural models, which define objects at coarse scale by a hierarchy of figures—each figure generally a slab representing a solid region and its boundary simultaneously. This paper focuses on the use of single figure models to segment objects of relatively simple structure.A single figure is a sheet of medial atoms, which is interpolated from the model formed by a net, i.e., a mesh or chain, of medial atoms (hence the name m-reps), each atom modeling a solid region via not only a position and a width but also a local figural frame giving figural directions and an object angle between opposing, corresponding positions on the boundary implied by the m-rep. The special capability of an m-rep is to provide spatial and orientational correspondence between an object in two different states of deformation. This ability is central to effective measurement of both geometric typicality and geometry to image match, the two terms of the objective function optimized in segmentation by deformable models. The other ability of m-reps central to effective segmentation is their ability to support segmentation at multiple levels of scale, with successively finer precision. Objects modeled by single figures are segmented first by a similarity transform augmented by object elongation, then by adjustment of each medial atom, and finally by displacing a dense sampling of the m-rep implied boundary. While these models and approaches also exist in 2D, we focus on 3D objects.The segmentation of the kidney from CT and the hippocampus from MRI serve as the major examples in this paper. The accuracy of segmentation as compared to manual, slice-by-slice segmentation is reported.     

Development of a system for measurement of permeability of aroma compounds through multilayer polymer films by coupling dynamic vapour sorption with purge‐and‐trap/fast gas chromatography

A system for measurement of permeability of aroma compounds through laminated polymer films was constructed by combining dynamic vapour sorption (DVS) with purge‐and‐trap/fast gas chromatography (P&T–fGC). Data validation was achieved by measuring the permeability of limonene across an HDPE film (film C) and comparing the permeation data with the literature values. The general applicability of this system, as well as its potential for simultaneous measurement of permeability of multiple aroma compounds, was demonstrated by measuring the permeability of limonene and ethyl butyrate as single permeants or as co‐permeants under different environmental conditions (at 25°C, 30°C or 35°C and 0% or 75% RH) through three different multilayer polymer films (film A, HDPE/EVOH/HDPE/HDPE; film B, HDPE/nylon/HDPE/HDPE; film C, HDPE/HDPE). The results showed that the aroma barrier performance of plastic films was determined by the polymer composition and was affected by various factors, such as temperature and the presence of other co‐permeants. Simplicity, speed and accuracy were some of the attractive features of this system, which indicates its potential as a useful tool that could be applied in the food industry for screening or selection of appropriate packaging materials for specific applications. Copyright © 2004 John Wiley & Sons, Ltd.     

Predicting Infant Maltreatment in Low-Income Families: The Interactive Effects of Maternal Attributions and Child Status at Birth.

Maternal attributions and child neonatal status at birth were assessed as predictors of infant maltreatment (harsh parenting and safety neglect). The population included low-income, low-education families who were primarily Hispanic. Child maltreatment during the 1st year of life (N = 73) was predicted by neonatal status (low Apgar scores, preterm status), as moderated by mothers' attributions. The highest levels of maltreatment were shown within dyads that included a mother with low perceived power and an at-risk infant. Partial support was found for maternal depressive symptoms as mediators of harsh parenting among at-risk infants. It is suggested that lack of perceived parental power constrains investment in protective relationships and fosters sensitization to potential threat. (PsycINFO Database Record (c) 2010 APA, all rights reserved)     

A 2 MV Van de Graaff accelerator as a tool for planetary and impact physics research

Investigating the dynamical and physical properties of cosmic dust can reveal a great deal of information about both the dust and its many sources. Over recent years, several spacecraft (e.g., Cassini, Stardust, Galileo, and Ulysses) have successfully characterised interstellar, interplanetary, and circumplanetary dust using a variety of techniques, including in situ analyses and sample return. Charge, mass, and velocity measurements of the dust are performed either directly (induced charge signals) or indirectly (mass and velocity from impact ionisation signals or crater morphology) and constrain the dynamical parameters of the dust grains. Dust compositional information may be obtained via either time-of-flight mass spectrometry of the impact plasma or direct sample return. The accurate and reliable interpretation of collected spacecraft data requires a comprehensive programme of terrestrial instrument calibration. This process involves accelerating suitable solar system analogue dust particles to hypervelocity speeds in the laboratory, an activity performed at the Max Planck Institut fu?r Kernphysik in Heidelberg, Germany. Here, a 2 MV Van de Graaff accelerator electrostatically accelerates charged micron and submicron-sized dust particles to speeds up to 80 km s(-1). Recent advances in dust production and processing have allowed solar system analogue dust particles (silicates and other minerals) to be coated with a thin conductive shell, enabling them to be charged and accelerated. Refinements and upgrades to the beam line instrumentation and electronics now allow for the reliable selection of particles at velocities of 1-80 km s(-1) and with diameters of between 0.05 μm and 5 μm. This ability to select particles for subsequent impact studies based on their charges, masses, or velocities is provided by a particle selection unit (PSU). The PSU contains a field programmable gate array, capable of monitoring in real time the particles' speeds and charges, and is controlled remotely by a custom, platform independent, software package. The new control instrumentation and electronics, together with the wide range of accelerable particle types, allow the controlled investigation of hypervelocity impact phenomena across a hitherto unobtainable range of impact parameters.     

The interactive effects of listwide control, item-based control, and working memory capacity on Stroop performance.

Hypothesized top-down and bottom-up mechanisms of control within conflict-rich environments were examined by presenting participants with a Stroop task in which specific words were usually presented in either congruent or incongruent colors. Incongruent colors were either frequently (high contingency) or infrequently (low contingency) paired with the word. These items were embedded within lists consisting of either 100% congruent or 100% incongruent filler items to create mostly congruent or mostly incongruent lists. Results indicated a significant item-specific congruency effect, which was largest for high contingency responses and within mostly congruent lists. In addition, a significant listwide congruency effect was obtained, and this interacted with working memory capacity (WMC). There were larger listwide congruency effects for low WMC individuals. Finally, the pattern of Stroop interference across lists for low WMC individuals was dependent upon the congruency of the preceding trial. These results support multiple forms of cognitive control, as well as contingency learning, as mechanisms underlying proportion congruence effects in Stroop and other conflict tasks. These findings are interpreted within Braver, Gray, and Burgess's (2007) dual mechanisms of control theory. (PsycINFO Database Record (c) 2011 APA, all rights reserved)     

Research methods for profile analysis: Introduction to the special issue.

The five articles that make up the bulk of this special issue collectively illustrate new methods for examining the utility of sub-test and scale-level profile analysis. By necessity they are preliminary, but they illustrate methods that may indeed prove useful and may help resolve this divide between research and practice. This special issue grew out of a symposium conceived and organized by Cecil Reynolds at the American Psychological Association in 1998. The articles and one of the commentaries in this special issue are extensions of that symposium. (PsycINFO Database Record (c) 2010 APA, all rights reserved)     

The binding motifs for Ac transposase are absolutely required for excision of Ds1 in maize

A reverse genetic system for studying excision of the transposable element Ds1 in maize plants has been established previously. In this system, the Ds1 element, as part of the genome of maize streak virus (MSV), is introduced into maize plants via agroinfection. In the presence of the Ac element, excision of Ds1 from the MSV genome results in the appearance of viral symptoms on the maize plants. Here, we used this system to study DNA sequences required in cis for excision of Ds1. The Ds1 element contains the Ac transposase binding motif AAACGG in only one of its subterminal regions (defined here as the 5' subterminal region). We showed that mutation of these motifs abolished completely the excision capacity of Ds1. This is the first direct demonstration that the transposase binding motifs are essential for excision. Mutagenesis with oligonucleotide insertions in the other (3') subterminal region resulted in elements with either a reduced or an increased excision efficiency, indicating that this subterminal region also has an important function.     

Crohn’s Disease,Host–Microbiota Interactions,and Immunonutrition: Dietary Strategies Targeting Gut Microbiome as Novel Therapeutic Approaches

Crohn’s disease (CD) is a complex, disabling, idiopathic, progressive, and destructive disorder with an unknown etiology. The pathogenesis of CD is multifactorial and involves the interplay between host genetics, and environmental factors, resulting in an aberrant immune response leading to intestinal inflammation. Due to the high morbidity and long-term management of CD, the development of non-pharmacological approaches to mitigate the severity of CD has recently attracted great attention. The gut microbiota has been recognized as an important player in the development of CD, and general alterations in the gut microbiome have been established in these patients. Thus, the gut microbiome has emerged as a pre-eminent target for potential new treatments in CD. Epidemiological and interventional studies have demonstrated that diet could impact the gut microbiome in terms of composition and functionality. However, how specific dietary strategies could modulate the gut microbiota composition and how this would impact host–microbe interactions in CD are still unclear. In this review, we discuss the most recent knowledge on host–microbe interactions and their involvement in CD pathogenesis and severity, and we highlight the most up-to-date information on gut microbiota modulation through nutritional strategies, focusing on the role of the microbiota in gut inflammation and immunity.