Characterisation of the Dynamic Interactions between Complex N-Glycans and Human CD22

CD22 (Siglec-2) is a B-cell surface inhibitory protein capable of selectively recognising sialylated glycans, thus dampening autoimmune responses against self-antigens. Here we have characterised the dynamic recognition of complex-type N-glycans by human CD22 by means of orthogonal approaches including NMR spectroscopy, computational methods and biophysical assays. We provide new molecular insights into the binding mode of sialoglycans in complex with h-CD22, highlighting the role of the sialic acid galactose moieties in the recognition process, elucidating the conformational behaviour of complex-type N-glycans bound to Siglec-2 and dissecting the formation of CD22 homo-oligomers on the B-cell surface. Our results could enable the development of additional therapeutics capable of modulating the activity of h-CD22 in autoimmune diseases and malignancies derived from B-cells.     

Strength improvement and purification of Yb2Si2O7‐SiC nanocomposites by surface oxidation treatment

A two‐step processing was developed to prepare Yb₂Si₂O₇‐SiC nanocomposites. Yb₂Si₂O₇‐Yb₂SiO₅‐SiC composites were first fabricated by a solid‐state reaction/hot‐pressing method. The composites were then annealed at 1250°C in air for 2 hours to activate the oxidation of SiC, which effectively transformed the Yb₂SiO₅ into Yb₂Si₂O₇. The surface cracks purposely induced can be fully healed during the oxidation treatment. The treated composites have improved flexural strength compared to their pristine composites. The mechanism for crack healing and silicate transformation have been proposed and discussed in detail.     

Supercritical fluid extraction of bacterial and archaeal lipid biomarkers from anaerobically digested sludge

Supercritical fluid extraction (SFE) was used in the analysis of bacterial respiratory quinone (RQ), bacterial phospholipid fatty acid (PLFA), and archaeal phospholipid ether lipid (PLEL) from anaerobically digested sludge. Bacterial RQ were determined using ultra performance liquid chromatography (UPLC). Determination of bacterial PLFA and archaeal PLEL was simultaneously performed using gas chromatography-mass spectrometry (GC-MS). The effects of pressure, temperature, and modifier concentration on the total amounts of RQ, PLFA, and PLEL were investigated by 23 experiments with five settings chosen for each variable. The optimal extraction conditions that were obtained through a multiple-response optimization included a pressure of 23.6 MPa, temperature of 77.6 °C, and 10.6% (v/v) of methanol as the modifier. Thirty nine components of microbial lipid biomarkers were identified in the anaerobically digested sludge. Overall, the SFE method proved to be more effective, rapid, and quantitative for simultaneously extracting bacterial and archaeal lipid biomarkers, compared to conventional organic solvent extraction. This work shows the potential application of SFE as a routine method for the comprehensive analysis of microbial community structures in environmental assessments using the lipid biomarkers profile.     

A Comprehensive Study of the Interaction between Peptidoglycan Fragments and the Extracellular Domain of Mycobacterium tuberculosis Ser/Thr Kinase PknB

The Mycobacterium tuberculosis Ser/Thr kinase PknB is implicated in the regulation of bacterial cell growth and cell division. The intracellular kinase function of PknB is thought to be triggered by peptidoglycan (PGN) fragments that are recognized by the extracytoplasmic domain of PknB. The PGN in the cell wall of M. tuberculosis has several unusual modifications, including the presence of N-glycolyl groups (in addition to N-acetyl groups) in the muramic acid residues and amidation of d -Glu in the peptide chains. Using synthetic PGN fragments incorporating these diverse PGN structures, we analyzed their binding characters through biolayer interferometry (BLI), NMR spectroscopy, and native mass spectrometry (nMS) techniques. The results of BLI showed that muropeptides containing 1,6-anhydro-MurNAc and longer glycan chains exhibited higher binding potency and that the fourth amino acid of the peptide stem, d -Ala, was crucial for protein recognition. Saturation transfer difference (STD) NMR spectroscopy indicated the major involvement of the stem peptide region in the PASTA-PGN fragment binding. nMS suggested that the binding stoichiometry was 1:1. The data provide the first molecular basis for the specific interaction of PGN with PknB and firmly establish PGNs as the effective ligands of PknB.     

Formation of Exclusive Al2O3 Scale on Nb and Nb-Rich Alloys by Two-Step Oxygen–Aluminum Diffusion Process

External Al₂O₃ scale formation behavior by a diffusion aluminizing process on Nb and Nb–X (X?=?Mo, Re, and Ta) alloys with different oxygen solubilities was investigated. The oxygen content in Nb and Nb–X alloys was controlled by oxygen diffusion treatment at 1,100?°C using Nb/NbO mixture. Nb–aluminide, NbAl₃ and Nb₂Al, layers were developed on the low-oxygen Nb substrate by an aluminum diffusion treatment using Al/Al₂O₃/NH₄Cl mixture at 1,100?°C; whereas an adhesive Al₂O₃ scale developed on the Nb substrate with higher oxygen content. The alloy oxygen content decreased by an addition of Ta, Mo and Re, in this order, and the decrease in alloy oxygen content resulted in the transition of Al₂O₃ formation from external scale to internal precipitates. This transition was not observed when low Al activity powder mixture, Ni50Al/Al₂O₃/NH₄Cl, was used for Al diffusion process, and only external Al₂O₃ scale was developed on all samples. In the present study, the effects of oxygen solubility limit, oxygen content, and the activity of Al in diffusion process on the formation of Al₂O₃ scale will be discussed.     

Magnetic field-assisted finishing for micropore X-ray focusing mirrors fabricated by deep reactive ion etching

A magnetic field-assisted finishing process has been studied for high-aspect-ratio ion-etched silicon curvilinear micropore structures, which have potential application as mirrors for satellite-borne X-ray telescopes. The micropore sidewalls act as X-ray focusing mirrors, and lead to reductions in the mass-to-effective-area ratio of 10-1000 times, compared to traditional X-ray telescopes. This paper describes the processing principle for the surface finishing of the sidewalls of micropore structures (10, 20 μm and depth: 300 μm (aspect ratio ≈ 15, 30)), and the feasibility of achieving roughness ∼4 nm rms and improving the X-ray reflectivity of micropore sidewall surface are demonstrated.     

Multi-walled carbon nanotube-reinforced copper nanocomposite coating fabricated by low-pressure cold spray process

Multi-walled carbon nanotube (MWCNT)-reinforced copper (Cu) nanocomposite coatings were successfully deposited on aluminum (Al) substrate by a cold spraying process at a low pressure. The microstructure and the Raman spectrum of the low-pressure-cold-sprayed MWCNT–Cu nanocomposite coating showed that the MWCNTs maintained their tube structure in the Cu matrix, even though structural damage to the MWCNTs increased slightly. MWCNT–Cu nanocomposite-coated Al exhibits higher thermal diffusivity than pure-Cu-coated Al with a comparable hardness. The higher thermal diffusivity of the MWCNT–Cu coating could be explained by the dispersion of MWCNTs within the clean and closed CNT/Cu interfaces, which were achieved with the aid of compressive stress during the cold spraying.     

Transparent Hydroxyapatite Prepared by Hot Isostatic Pressing of Filter Cake

Hydroxyapatite powder was synthesized and formed into a compact in an aqueous medium using a filter-cake method. The compact was hot isostatically pressed at 700° to 1000°C and 100 MPa for 2 h. Fully dense, transparent materials were obtained above 800°C. Both forming and densification methods were found to be important in obtaining transparent materials.     

Mechanism‐Guided Library Design and Dual Genetic Selection of Synthetic OFF Riboswitches

After the recent discovery of bacterial riboswitches, synthetic riboswitches have been engineered by using natural and artificial RNA aptamers. In contrast to natural riboswitches, the majority of synthetic riboswitches in bacteria reported to date are ON switches that activate gene expression in response to the aptamer ligand. In this study, we adopted a mechanism‐guided approach to design libraries predisposed to contain OFF riboswitches that respond to thiamine pyrophosphate (TPP). The first library design exploited a pseudo‐Shine‐Dalgarno (SD) sequence located near the 3′‐end of the TPP aptamer, which would be less accessible to the ribosome when the aptamer is bound to TPP. In the second library, an SD sequence was strategically placed in the aptamer's P1 stem, which is stabilized upon ligand binding. OFF riboswitches were obtained by dual genetic selection of these libraries. The results underscore the importance of effective library design to achieve desired riboswitch functions.