Target Score—A Proteomics Data Selection Tool Applied to Esophageal Cancer Identifies GLUT1-Sialyl Tn Glycoforms as Biomarkers of Cancer Aggressiveness

Esophageal cancer (EC) is a life-threatening disease, demanding the discovery of new biomarkers and molecular targets for precision oncology. Aberrantly glycosylated proteins hold tremendous potential towards this objective. In the current study, a series of esophageal squamous cell carcinomas (ESCC) and EC-derived circulating tumor cells (CTCs) were screened by immunoassays for the sialyl-Tn (STn) antigen, a glycan rarely expressed in healthy tissues and widely observed in aggressive gastrointestinal cancers. An ESCC cell model was glycoengineered to express STn and characterized in relation to cell proliferation and invasion in vitro. STn was found to be widely present in ESCC (70% of tumors) and in CTCs in 20% of patients, being associated with general recurrence and reduced survival. Furthermore, STn expression in ESCC cells increased invasion in vitro, while reducing cancer cells proliferation. In parallel, an ESCC mass spectrometry-based proteomics dataset, obtained from the PRIDE database, was comprehensively interrogated for abnormally glycosylated proteins. Data integration with the Target Score, an algorithm developed in-house, pinpointed the glucose transporter type 1 (GLUT1) as a biomarker of poor prognosis. GLUT1-STn glycoproteoforms were latter identified in tumor tissues in patients facing worst prognosis. Furthermore, healthy human tissues analysis suggested that STn glycosylation provided cancer specificity to GLUT1. In conclusion, STn is a biomarker of worst prognosis in EC and GLUT1-STn glycoforms may be used to increase its specificity on the stratification and targeting of aggressive ESCC forms.     

Using Policy and Regulatory Frameworks to Facilitate Water Transitions

There are persistent calls across policy, industry and academia for urban water transitions in order to deliver increased sustainability, liveability and resilience. However, realisation of such transformational change is difficult, and there are a number of undesirable or unsuccessful transition trajectories that can manifest. Drawing on a contemporary stormwater quality management transition in South-East Queensland, Australia, this qualitative research paper provides an empirical exploration of a transition in struggle. The paper examines why and how this transition trajectory unfolded, focusing specifically on the evolution of culture, structure and practice changes from the 1970s to the present-day. The paper makes two scholarly contributions, firstly confirming the dynamic nature of transformational change and indicating the need to design transition initiatives across the culture, structure and practice domains to co-evolve and thereby build a robust and mutually reinforcing transition foundation. The results also reveal the critical role of regulation in providing a safety net for the transition and enabling continued progress even when commitment to policy goals wavers. These results also provide practical insight for practitioners engaged in the implementation of transition processes, and reveal the need for transition advocates to deliberately and proactively engage with regulatory frameworks to embed a novel practice.     

High accumulation of perfluorooctane sulfonate (PFOS) in marine tucuxi dolphins (Sotalia guianensis) from the Brazilian coast

Perfluorooctane sulfonate (PFOS) and other perfluoroalkyl compounds (PFCs) were measured in liver samples from 29 marine tucuxi dolphins from Rio de Janeiro state (RJ), Brazil. PFC measurement combined liquid chromatography and mass spectrometry, using a CapLC system connected to a Quadrupole-LIT mass spectrometer. PFOS was the only PFC detected and it was so in all samples. PFOS concentrations (ng x g(-1) dw) of dolphins (n=23) from the highly contaminated Guanabara Bay (in RJ) varied between 43 and 2431 as well as between 76 and 427 from areas of RJ other than the quoted bay (n=6). Concentrations of three fetuses and one neonate varied between 664 and 1590. Fetus/mother ratios were calculated in two situations (2.75 and 2.62). It seems that mother-to-calf transference plays important role for relationships between PFOS and age. When a one-year-old male calf presenting 2431 ng x g(-1) dw was excluded from the test, significant correlations were observed between PFOS concentrations and both age and total length. Despite the placental transference, PFOS concentrations were not significantly lower in females than in males. PFOS levels in marine tucuxi dolphins from Guanabara Bay are among the highest detected to date in cetaceans, and this may represent a threat to the small population concerned.     

River fragmentation in the northern Sandomierz Basin (SE Poland)

River fragmentation is a process highly detrimental for fish survival by impeding their migrations. Although fragmentation by big dams has been studied, there is still a big deficiency of data related to small barriers. This study was designed as a detailed, local-scale analysis of several chosen river stretches in the Sandomierz Basin, Poland. It aimed to: (1) map all natural and artificial barriers in the study area, (2) assess the impacts of these barriers on fish migration, (3) compare findings to existing databases, and (4) make recommendations for improved barrier management. Ten lowland rivers covering a total 424 km length were surveyed by river walkovers and kayak surveys, with all the barriers mapped and all the artificial structures assessed for fish migration using the ICE protocol protocol for ecological continuity. There were 67 beaver dams and 89 artificial barriers recorded, with only 24% of the latter being included in national databases. The average artificial barrier density in all the surveyed rivers was 0.2 barriers/km and varied from 0.75 barriers/km in first order streams to 0.01 barriers/km in sixth order river. The findings revealed that 18% of the barriers were passable for all fish species, with 35% totally impassable. The analysis of specific barrier parameters indicated that water depth at the barrier had a greater influence on fish passability than the barrier height. Several barriers were proposed for removal to specifically improve the potential for fish migration.     

Influence of rotor structural dynamics representations on the electrical transient performance of FSIG and DFIG wind turbines

An assessment of the impact that the representation of rotor structural dynamics has on the electrical transient performance of fixed‐speed induction generators (FSIGs) and doubly fed induction generators (DFIGs) wind turbines is presented. A three‐mass model that takes into account not only the shaft flexibility but also the blade flexibility in the structural dynamics is developed and used to derive an effective two‐mass model of the drive train dynamics, which represents the dominant natural frequency of vibration of the rotor structure. For the purposes of this investigation, the dynamic performance of both FSIG and DFIG wind turbines is evaluated during electrical transients such as a three‐phase fault in the network. The studies are conducted in the software code Bladed, where a detailed representation of the structural dynamics is used to derive the three‐mass model and the effective two‐mass model. Simulation results which illustrate how these representations of the rotor dynamics affect the response of the wind turbine during the fault are presented and discussed. Copyright © 2007 John Wiley & Sons, Ltd.     

A methodology for the efficient computer representation of dynamic power systems: Application to wind parks

This contribution presents a methodology to efficiently obtain the numerical and computer solution of dynamic power systems with high penetration of wind turbines. Due to the excessive computational load required to solve the abc models that represent the behavior of the wind turbines, a parallel processing scheme is proposed to enhance the solution of the overall system. Case studies are presented which demonstrate the effectiveness and applications of the proposed methodology. Copyright © 2012 John Wiley & Sons, Ltd.     

Synthesis of cobalt–silicon oxide thin films

Silicon–cobalt oxide thin films were prepared by the dipping sol–gel process. Samples with different number of dipping–annealing cycles were prepared. Some data regarding the precursor sol are given from small angle X-ray scattering characterization. Composition, structure, surface morphology and optical properties are obtained from X-ray diffraction, reflectance, transmittance, FTIR, scanning electron microscopy and EDX spectroscopy measurements. The silicon–cobalt oxide thin films prepared in this work are mostly amorphous. They have a high absorption coefficient in the visible and infrared regions. A refractive index from 2.15 to 1.79 (at 1200 nm wavelength), and a band gap between 3.73 and 3.68 eV with increasing film thickness were measured in the films. Sol–gel prepared Si–Co oxide thin films could be well suited for use in photothermal solar collectors.     

La CLAve to increase psychosis literacy of Spanish-speaking community residents and family caregivers.

The authors developed and tested a 35-min psychoeducational program with the goal of increasing Spanish-speaking persons’ literacy of psychosis. The program uses popular cultural icons derived from music, art, and videos, as well as a mnemonic device—La CLAve (The Clue)—to increase (a) knowledge of psychosis, (b) efficacy beliefs that one can identify psychosis in others, (c) attributions to mental illness, and (d) professional help-seeking. Assessments were conducted before and after administering the program to both community residents (n = 57) and family caregivers of persons with schizophrenia (n = 38). For community residents, the authors observed increases across the 4 domains of symptom knowledge, efficacy beliefs, illness attributions, and recommended help-seeking. For caregivers, increases were observed in symptom knowledge and efficacy beliefs. La CLAve is a conceptually informed psychoeducational tool with a developing empirical base aimed at helping Spanish-speaking Latinos with serious mental illness obtain care in a timely manner. (PsycINFO Database Record (c) 2010 APA, all rights reserved)     

A preliminary pharmacogenetic investigation of adverse events from topiramate in heavy drinkers.

Topiramate, an anticonvulsant medication, is an efficacious treatment for alcohol dependence. To date, little is known about genetic moderators of side effects from topiramate. The objective of this study was to examine 3 single nucleotide polymorphisms (SNPs) of the glutamate receptor GluR5 gene (GRIK1) as predictors of topiramate-induced side effects in the context of a laboratory study of topiramate. Heavy drinkers (n = 51, 19 women and 32 men), 75% of whom met criteria for an alcohol use disorder, completed a 5-week dose escalation schedule to a target dose of either 200 or 300 mg or matched placebo. The combined medication groups were compared with placebo-treated individuals for side effects at target dose. Analyses revealed that an SNP in intron 9 of the GRIK1 gene (rs2832407) was associated with the severity of topiramate-induced side effects and with serum levels of topiramate. Genes underlying glutamatergic neurotransmission, such as the GRIK1 gene, may help predict heterogeneity in topiramate-induced side effects. Future studies in larger samples are needed to more fully establish these preliminary findings. (PsycINFO Database Record (c) 2010 APA, all rights reserved)     

Evaluation of basidiomycetous fungi for pretreatment of contaminated soil

BACKGROUND: For most dioxin‐contaminated sawmill soils, combustion is recommended. However, the process may be inefficient if the soil has a high organic matter content. The use of saprotrophic basidiomycetous fungi is an alternative for pretreatment of this kind of soil. A total of 147 fungi were evaluated for their ability to grow in sawmill soil. From this screening, the best soil colonizing fungi were selected to study their enzyme activities and degradation of soil organic matter. Pine (Pinus sylvestris) bark was used as a co‐substrate to propagate the fungi into the soil. The activities of manganese peroxidase (MnP), laccase, endo‐1,4‐β‐glucanase, endo‐1,4‐β‐xylanase, and endo‐1,4‐β‐mannanase were analysed from the inocula and fungal treated soil. RESULTS: The screening revealed that 56 out of 147 fungi were able to grow in non‐sterile soil, and most of them were litter‐decomposing fungi (LDF). In pine bark cultures, the highest enzyme activities were observed with Phanerochaete velutina, which produced 5 U g^?1 of MnP. The activity of endo‐1,4‐β‐glucanase was generally higher than that of other hydrolytic enzymes. The highest carbon loss from soil with a high organic matter content was achieved by P. velutina (3.4%) and Stropharia rugosoannulata (2.4%). CONCLUSIONS: Many LDF, and in addition the white‐rot fungus P. velutina, are potential degraders of soil organic matter since they showed good growth and respiratory activity. Pine bark was a suitable lignocellulosic co‐substrate and a good promoter of MnP activity. Copyright © 2009 Society of Chemical Industry