Label-Free Identification of Exosomes using Raman Spectroscopy and Machine Learning

Exosomes, nano-sized extracellular vesicles (EVs) secreted from cells, carry various cargo molecules reflecting their cells of origin. As EV content, structure, and size are highly heterogeneous, their classification via cargo molecules by determining their origin is challenging. Here, a method is presented combining surface-enhanced Raman spectroscopy (SERS) with machine learning algorithms to employ the classification of EVs derived from five different cell lines to reveal their cellular origins. Using an artificial neural network algorithm, it is shown that the label-free Raman spectroscopy method's prediction ratio correlates with the ratio of HT-1080 exosomes in the mixture. This machine learning-assisted SERS method enables a new direction through label-free investigation of EV preparations by differentiating cancer cell-derived exosomes from those of healthy. This approach will potentially open up new avenues of research for early detection and monitoring of various diseases, including cancer.     

The effect of levels of processing with navigation design types on recall and retention in e-learning environments

The purpose of this study was to investigate the effects of levels of processing (LOP) and various navigation design types (NDTs) on high school students’ recall and retention performances in e-learning environments. The participants’ (N=90) performances of free recall, title recognition, location memory and their retentions were measured in two different navigational layout design types by giving participants the instructional tasks which were designed in shallow, medium and deep LOP. Results are in accordance with the main argument of LOP; deeply processed elements are remembered better and the strength of the encoded memory trace depends on the mental processes carried out with different types of tasks. Results show that the main effects of LOP and NDT on memory performance are significant.     

Antibody purification using porous metal–chelated monolithic columns

A novel monolithic material was developed to obtain efficient and cost‐effective purification of IgG from human plasma. The porous monolith was obtained by bulk polymerization in a glass tube of 2‐hydroxyethyl methacrylate (HEMA) and N‐methacryloyl‐(L )‐histidine methyl ester (MAH). The poly(HEMA‐MAH) monolith had a specific surface area of 214.6 m²/g and was characterized by swelling studies, porosity measurement, FTIR, scanning electron microscopy, and elemental analysis. Then the monolith was loaded with Cu²⁺ ions to form the metal chelate. Poly(HEMA‐MAH) monolith with a swelling ratio of 74% and containing 20.9 μmol MAH/g was used in the adsorption/desorption of IgG from aqueous solutions and human plasma. The maximum adsorption of IgG from an aqueous solution in phosphate buffer was 10.8 mg/g at pH 7.0. Higher adsorption was obtained from human plasma (up to 104.2 mg/g), with a purity of 94.1%. It was observed that IgG could be repeatedly adsorbed and desorbed with the poly(HEMA‐MAH) monolith without significant loss of adsorption capacity. © 2006 Wiley Periodicals, Inc. J Appl Polym Sci 101: 395–404, 2006     

Polysulfone based amphiphilic graft copolymers by click chemistry as bioinert membranes

A series of well-defined amphiphilic graft copolymers with hydrophobic polysulfone (PSU) as backbones and hydrophilic poly(ethylene glycol) (PEG) as side chains were synthesized and characterized. For this purpose, PSUs were converted to azido-functionalized polymers by successive chloromethylation and azidation processes to give clickable PSUs. Then, the ω-hydroxyl function of the commercially available PEG-OH was converted into propargyl functionality by simple esterification process. Ultimately, the alkyne functionalized PEO was successfully grafted onto the PSUs by click chemistry. The final polymers and intermediates at various stages were characterized by ¹H NMR, FT-IR, and GPC techniques. The bioinert character of PEG grafted PSU was confirmed by static protein adsorption and prokaryotic and eukaryotic cell adhesion studies, and compared to that of unmodified PSU.     

Production Principles and Technological Development of Novel Woven Spacer Preforms and Integrated Stiffener Structures

3D textile preforms offer a high potential to increase mechanical properties of composites and/or decrease manufacturing costs. Within the scope of this study, production principles were developed for complex spacer preforms and integrated stiffeners. These principles were applied through technological further development of the well-known face-to-face and terry weaving techniques. Various woven preforms were produced with Glass fibre/Polypropylene (GF/PP) Commingled yarns, however, the technology is suitable for any type of reinforcement yarns. U-shaped woven spacer preform was consolidated into a sandwich composite component for lightweight applications.     

Spectral characterization of lysozyme adsorption on dye-affinity beads

Cibacron Blue F3GA-attached magnetic poly(2-hydroxyethyl methacrylate) [mPHEMA] beads were prepared by suspension polymerization of HEMA in the presence of magnetite (Fe₃O₄) nanopowder. Average diameter size of the mPHEMA beads was 150–200 μm. The characteristic functional groups of Cibacron Blue F3GA-attached mPHEMA beads were analyzed by Fourier transform infrared spectrometer (FTIR) and Raman scattering spectrometer. The lysozyme adsorption and desorption characteristics of Cibacron Blue F3GA-attached mPHEMA beads were also investigated using FTIR and Raman spectroscopic techniques. When the Raman spectrum of lysozyme adsorbed mPHEMA is evaluated characteristic Amide-I band appears at 1657 cm⁻¹. The intensity of this band decreases in the spectrum of lysozyme desorbed mPHEMA sample. When the characteristic bands of lysozyme adsorbed and desorbed mPHEMA samples are compared, the band intensities of desorbed sample are lower than those of lysozyme adsorbed sample except for the band appearing at 656 cm⁻¹ (Tyr vC S). © 2008 Wiley Periodicals, Inc. J Appl Polym Sci, 2008     

Characterization of polyphenoloxidase (PPO) and total phenolic contents in medlar (Mespilus germanica L.) fruit during ripening and over ripening

Characterization of polyphenoloxidase (PPO) enzyme and determination of total phenolic concentrations during fruit ripening and over ripening in medlar (Mespilus germanica L.) were determined. During ripening, PPO substrate specificity, optimum pH and temperature, optimum enzyme and substrate concentrations were determined. Among the five mono- and di-phenolic substrates examined ((p-hydroxyphenyl) propionic acid, l-3,4-dihydroxyphenylalanine, catechol, 4-methylcatechol and tyrosine), 4-methylcatechol was selected as the best substrate for all ripening stages. A range of pH 3.0–9.0 was also tested and the highest enzyme activity was at pH 7.0 throughout ripening. The optimum temperature for each ripening stage was determined by measuring the enzyme activity at various temperatures over the range of 10–70 °C with 10 °C increments. The optimum temperatures were found to be 30, 20 and 30 °C, respectively, for each ripening stage. Optimum enzyme and substrate concentrations were found to be 0.1 mg/ml and 40 mM, respectively. The V_max and K_m value of the reaction were determined during ripening and found to be 476 U/mg protein and 26 mM at 193 DAFB (days after full bloom) – stage 1, 256 U/mg protein and 12 mM at 207 DAFB – stage 2, 222 U/mg protein and 8 mM at 214 DAFB – stage 3. For all ripening stages sodium metabisulfite markedly inhibited PPO activity. For stage 1 of ripening, Cu²⁺, Hg²⁺ and Al³⁺, for stage 2, Cu²⁺ and Hg²⁺, and for stage 3, Cu²⁺, Hg²⁺, Al³⁺ and Ca²⁺ strongly inhibited diphenolase activity. Accordingly, it can be concluded that as medlar fruit ripen there is no significant changes in the optimum values of polyphenoloxidases, although their kinetic parametres change. As the fruit ripening progressed through ripe to over-ripe, in contrary to polyphenoloxidase activity, there was an apparent gradual decrease in total fruit phenolic concentrations, as determined by using the aqueous solvents and water extractions.     

Plasmodium falciparum: increased proportion of severe resistance (RII and RIII) to chloroquine and high rate of resistance to sulfadoxine-pyrimethamine in Peninsular Malaysia after two decades

Uncomplicated falciparum malaria patients were randomly assigned to receive either 25 mg/kg chloroquine (CHL) over 3 d or a statim dose of 25 mg/kg sulfadoxine (SDX) plus 1.25 mg/kg pyrimethamine (PYR). Patients were followed up for 28 d and the parasite response graded according to World Health Organization criteria. Overall resistance to CHL was 63.3% and 47.4% to SDX/PYR. RI, RII and RIII rates were 9.1%, 42.4% and 12.1% for CHL and 10.5%, 21.1% and 15.8% for SDX/PYR, respectively. Degree and rates of resistance to CHL were significantly correlated with pre-treatment parasite density, but not those to SDX/PYR. Plasma CHL and SDX/PYR levels were within the reported ranges and were not significantly different in patients with sensitive and resistant responses.     

Soybean protein in human nutrition: An overview

The nutritional value of processed soy protein in human protein nutrition is reviewed on the basis of growth, nitrogen balance and metabolic studies in infants, children, adolescents and adults. When well processed soy products serve as the major or sole source of the protein intake, their protein value approaches or equals that of foods of animal origin, and they are fully capable of meeting the long term essential amino acid and protein needs of children and adults. The significance of the sulfur amino acid content of soy protein for practical human nutrition is also examined. For young children and adults, under conditions of normal usage of soy protein, it is concluded that methionine supplementation of good quality products is unnecessary and possibly undesirable. For feeding of the newborn, the limited data available suggest that supplementation of soy-based formulas with methionine may be beneficial. However, the appropriate level of supplementation is considerably less than that suggested from results obtained in rat feeding studies. At total protein intakes that approximate current dietary protein allowances, well processed soy protein products can replace meat and fish proteins without reducing the utilization of dietary nitrogen in adults, and they can serve as nutritionally valuable protein sources in cereal-based diets for child feeding. The value of long term studies concerned with tolerance to and acceptability of new soy protein products in adults is emphasized, and favorable results with two isolated soy protein products are described. The data indicate that properly processed soy protein foods are well tolerated and of good protein value for humans of all ages.