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51.
The HaLoop approach to large-scale iterative data analysis 总被引:1,自引:0,他引:1
Yingyi Bu Bill Howe Magdalena Balazinska Michael D. Ernst 《The VLDB Journal The International Journal on Very Large Data Bases》2012,21(2):169-190
The growing demand for large-scale data mining and data analysis applications has led both industry and academia to design
new types of highly scalable data-intensive computing platforms. MapReduce has enjoyed particular success. However, MapReduce
lacks built-in support for iterative programs, which arise naturally in many applications including data mining, web ranking,
graph analysis, and model fitting. This paper (This is an extended version of the VLDB 2010 paper “HaLoop: Efficient Iterative
Data Processing on Large Clusters” PVLDB 3(1):285–296, 2010.) presents HaLoop, a modified version of the Hadoop MapReduce framework, that is designed to serve these applications. HaLoop
allows iterative applications to be assembled from existing Hadoop programs without modification, and significantly improves
their efficiency by providing inter-iteration caching mechanisms and a loop-aware scheduler to exploit these caches. HaLoop
retains the fault-tolerance properties of MapReduce through automatic cache recovery and task re-execution. We evaluated HaLoop
on a variety of real applications and real datasets. Compared with Hadoop, on average, HaLoop improved runtimes by a factor
of 1.85 and shuffled only 4 % as much data between mappers and reducers in the applications that we tested. 相似文献
52.
Differential thermal analysis (DTA) was applied to determine the changes in enthalpy and entropy of (NH4)2ZnCl4 and K2ZnCl4 crystals at their phase transition from the orthorhombic normal phase to the incommensurate phase. The temperature of this transition, T
i
, is 406 K for (NH4)2ZnCl4 and 555 K for K2ZnCl4 and the entropy changes (S/R) are 0.053 and 0.035, respectively. The low value obtained for S/R is characteristic of incommensurate phase transitions. The results were compared with the data reported for other crystals of the A2BX4 family. Thermal properties of the crystals of the A2ZnCl4 subgroup were found to the correlated with the length of A-Cl bonds. 相似文献
53.
A new high-order model for analysing distribution of temperature in periodic composites is proposed. The original scalar elliptic problem with Y-periodic coefficients (Y is a cube) is replaced with a vectorial elliptic problem of constant coefficients. The unknown fields are: the averaged distribution of temperature and the vector field which stands for perturbation of the temperature within the cells of periodicity. The recovery of temperature in the original composite is given by the approximation: 0(x)=0(x) +h
a
(x/)
a
(x) analogous with the first terms of the two-scale asymptotic expansion known from the homogenization theory. The functions h
are defined as approximations of the solutions to the basic cell problems. In contrast to the two-scale expansion the expression for satisfies the boundary condition. 相似文献
54.
Measurements of the wetting contact angle for a marble surface were carried out for two systems: dry marble plate-water drop-saturated water vapour and marble wetted by water-water drop-dry air (in the presence of molecular sieves). The marble plate was placed in a measuring chamber and contact angles were measured after different lengths of time; it was found that their values grew to a maximum which was reached after about 30 min. It was found that when the dry marble plate was placed in saturated water vapour for 24 h the contact angle decreased in comparison with its maximal value. To explain the results obtained, theoretical calculations were made. The theoretical calculations and measurements showed that it was possible to obtain a contact angle greater than zero on a marble surface, depending on the structure and thickness of the water film. 相似文献
55.
D. Oleszak E. Jartych A. Antolak M. Pkaa M. Szymaska M. Budzyski 《Journal of Alloys and Compounds》2005,400(1-2):23-28
X-ray diffraction, Mössbauer spectroscopy and magnetization measurements were used to study the structure and some magnetic properties of Fe50Ge50 and Fe62Ge38 prepared by mechanical alloying from the elemental powders. In both cases in the early stages of milling the intermediate paramagnetic FeGe2 phase was formed. The mechanical alloying process of Fe50Ge50 resulted in the formation of the paramagnetic FeGe (B20) phase with an average crystallite size of about 15 nm. In the case of the Fe62Ge38, the ferromagnetic Fe5Ge3 (β) phase with a Curie temperature of about 430 K was obtained. The average crystallite size was about 9 nm. The average hyperfine magnetic field of about 16 T allowed it to determine that more than four germanium atoms exist in the nearest environment of the 57Fe isotopes in the Fe5Ge3 phase. 相似文献
56.
Renata Gruszka Krzysztof Zakrzewski Pawe Piotr Liberski Magdalena Zakrzewska 《International journal of molecular sciences》2021,22(2)
Numerous molecular factors disrupt the correctness of the cell cycle process leading to the development of cancer due to increased cell proliferation. Among known causative factors of such process is abnormal gene expression. Nowadays in the light of current knowledge such alterations are frequently considered in the context of mRNA–miRNA correlation. One of the molecular factors with potential value in tumorigenesis is the feedback loop between MYC and E2F genes in which miR-17-5p and miR-20a from the miR-17-92 cluster are involved. The current literature shows that overexpression of the members of the OncomiR-1 are involved in the development of many solid tumors. In the present work, we investigated the expression of components of the MYC/E2F/miR-17-92 network and their closely related elements including members of MYC and E2F families and miRNAs from two paralogs of miR-17-92: miR-106b-25 and miR-106a-363, in the most common brain tumors of childhood, pilocytic astrocytoma (PA), WHO grade 1; ependymoma (EP), WHO grade 2; and medulloblastoma (MB), WHO grade 4. We showed that the highest gene expression was observed in the MYC family for MYCN and in the E2F family for E2F2. Positive correlation was observed between the gene expression and tumor grade and type, with the highest expression being noted for medulloblastomas, followed by ependymomas, and the lowest for pilocytic astrocytomas. Most members of miR-17-92, miR-106a-363 and miR-106b-25 clusters were upregulated and the highest expression was noted for miR-18a and miR-18b. The rest of the miRNAs, including miR-19a, miR-92a, miR-106a, miR-93, or miR-25 also showed high values. miR-17-5p, miR-20a obtained a high level of expression in medulloblastomas and ependymomas, while close to the control in the pilocytic astrocytoma samples. miRNA expression also depended on tumor grade and histology. 相似文献
57.
Karolina Bukowska-Strakova Joanna Wodek Ewelina Pitera Magdalena Kozakowska Anna Konturek-Ciela Maciej Ciela Monika Goka Witold Nowak Aleksandra Wieczorek Katarzyna Pawiska-Wsikowska Alicja Jzkowicz Maciej Siedlar 《International journal of molecular sciences》2021,22(3)
Whilst the survival rates of childhood acute lymphoblastic leukemia (ALL) have increased remarkably over the last decades, the therapy resistance and toxicity are still the major causes of treatment failure. It was shown that overexpression of heme oxygenase-1 (HO-1) promotes proliferation and chemoresistance of cancer cells. In humans, the HO-1 gene (HMOX1) expression is modulated by two polymorphisms in the promoter region: (GT)n-length polymorphism and single-nucleotide polymorphism (SNP) A(−413)T, with short GT repeat sequences and 413-A variants linked to an increased HO-1 inducibility. We found that the short alleles are significantly more frequent in ALL patients in comparison to the control group, and that their presence may be associated with a higher risk of treatment failure, reflecting the role of HO-1 in chemoresistance. We also observed that the presence of short alleles may predispose to develop chemotherapy-induced neutropenia. In case of SNP, the 413-T variant co-segregated with short or long alleles, while 413-A almost selectively co-segregated with long alleles, hence it is not possible to determine if SNPs are actually of phenotypic significance. Our results suggest that HO-1 can be a potential target to overcome the treatment failure in ALL patients. 相似文献
58.
Magdalena Misiura Tomasz Guszczyn Ilona Oscilowska Weronika Baszanowska Jerzy Palka Wojciech Miltyk 《International journal of molecular sciences》2021,22(2)
Although the role of platelet-rich plasma (PRP) in tissue regeneration has been confirmed in many studies, the mechanism of this process is still not fully understood. Human keratinocytes (HaCaT) cells were used as an experimental model for studies on the effects of PRP on cell proliferation, migration, collagen biosynthesis, prolidase activity, and its expression and anabolic signaling. The activation of epidermal growth factor receptor (EGFR), β1-integrin, and insulin-like growth factor-1 receptor (IGF-1R) by PRP were investigated by western blot and immunocytochemistry. It has been found that PRP induced keratinocytes migration and proliferation through activation of cell cycle progression and EGFR downstream signaling. Similar biological effects were achieved by an addition to the culture medium of prolidase (PEPD), a ligand of EGFR (PRP is a rich source of PEPD–2 ng/mL). PRP-dependent stimulation of collagen biosynthesis was accompanied by an increase in the expression of NF-κβ, IGF-1R-downstream signaling proteins, and PEPD activity. The data suggest that PRP activates a complex of growth factors and adhesion receptors that stimulate cell proliferation, migration, and collagen biosynthesis. PRP induces PEPD-dependent human keratinocyte proliferation through activation of the EGFR receptor. Our study provides a novel mechanism of PRP-dependent wound healing. 相似文献
59.
Katarzyna Jasieniecka-Gazarkiewicz Kamil Demski Satinder K. Gidda Sylwia Kliska Janusz Niedojado Ida Lager Anders S. Carlsson Elena A. Minina Robert T. Mullen Peter V. Bozhkov Sten Stymne Antoni Bana 《International journal of molecular sciences》2021,22(6)
Arabidopsis thaliana possesses two acyl-CoA:lysophosphatidylethanolamine acyltransferases, LPEAT1 and LPEAT2, which are encoded by At1g80950 and At2g45670 genes, respectively. Both single lpeat2 mutant and double lpeat1 lpeat2 mutant plants exhibit a variety of conspicuous phenotypes, including dwarfed growth. Confocal microscopic analysis of tobacco suspension-cultured cells transiently transformed with green fluorescent protein-tagged versions of LPEAT1 or LPEAT2 revealed that LPEAT1 is localized to the endoplasmic reticulum (ER), whereas LPEAT2 is localized to both Golgi and late endosomes. Considering that the primary product of the reaction catalyzed by LPEATs is phosphatidylethanolamine, which is known to be covalently conjugated with autophagy-related protein ATG8 during a key step of the formation of autophagosomes, we investigated the requirements for LPEATs to engage in autophagic activity in Arabidopsis. Knocking out of either or both LPEAT genes led to enhanced accumulation of the autophagic adaptor protein NBR1 and decreased levels of both ATG8a mRNA and total ATG8 protein. Moreover, we detected significantly fewer membrane objects in the vacuoles of lpeat1 lpeat2 double mutant mesophyll cells than in vacuoles of control plants. However, contrary to what has been reported on autophagy deficient plants, the lpeat mutants displayed a prolonged life span compared to wild type, including delayed senescence. 相似文献
60.
Anita Romanowska Katarzyna Wgrzyn Katarzyna Bury Emilia Sikorska Aleksandra Gnatek Agnieszka Piwkowska Igor Konieczny Adam Lesner Magdalena Wysocka 《International journal of molecular sciences》2021,22(5)
The present study aimed to synthesize novel polycationic polymers composed of N-substituted L-2,3-diaminopropionic acid residues (DAPEGs) and investigate their cell permeability, cytotoxicity, and DNA-binding ability. The most efficient cell membrane-penetrating compounds (O2Oc-Dap(GO2)n-O2Oc-NH2, where n = 4, 6, and 8) showed dsDNA binding with a binding constant in the micromolar range (0.3, 3.4, and 0.19 µM, respectively) and were not cytotoxic to HB2 and MDA-MB-231 cells. Selected compounds used in the transfection of a GFP plasmid showed high transfection efficacy and minimal cytotoxicity. Their interaction with plasmid DNA and the increasing length of the main chain of tested compounds strongly influenced the organization and shape of the flower-like nanostructures formed, which were unique for 5/6-FAM-O2Oc-[Dap(GO2)]8-O2Oc-NH2 and typical for large proteins. 相似文献