Current Diagnosis and Treatment Options for Cutaneous Adnexal Neoplasms with Follicular Differentiation

Neoplasms derived from follicular tissue are extremely rare. Clinically, they are reported as non-symptomatic, slow-growing nodules. These lesions are mainly benign, but the malignant type can occur. Mainly middle-aged people (50–60 years of age) are affected. These carcinomas are mainly localized on the head and neck or torso. They can be locally aggressive and infiltrate surrounding tissue and metastasize to regional lymph nodes. In the minority of cases, distant metastases are diagnosed. Quick and relevant diagnosis is the basis of a treatment for all types of tumors. The patient’s life expectancy depends on multiple prognostic factors, including the primary tumor size and its mitotic count. Patients should be referred to a specialized skin cancer center to receive optimal multidisciplinary treatment. This article tries to summarize all the information that is currently available about pathogenesis, diagnosis, and treatment methods of follicular tumors.     

Solubility and Aggregation of Selected Proteins Interpreted on the Basis of Hydrophobicity Distribution

Protein solubility is based on the compatibility of the specific protein surface with the polar aquatic environment. The exposure of polar residues to the protein surface promotes the protein’s solubility in the polar environment. The aquatic environment also influences the folding process by favoring the centralization of hydrophobic residues with the simultaneous exposure to polar residues. The degree of compatibility of the residue distribution, with the model of the concentration of hydrophobic residues in the center of the molecule, with the simultaneous exposure of polar residues is determined by the sequence of amino acids in the chain. The fuzzy oil drop model enables the quantification of the degree of compatibility of the hydrophobicity distribution observed in the protein to a form fully consistent with the Gaussian 3D function, which expresses an idealized distribution that meets the preferences of the polar water environment. The varied degrees of compatibility of the distribution observed with the idealized one allow the prediction of preferences to interactions with molecules of different polarity, including water molecules in particular. This paper analyzes a set of proteins with different levels of hydrophobicity distribution in the context of the solubility of a given protein and the possibility of complex formation.     

The Co-Culture of Staphylococcal Biofilm and Fibroblast Cell Line: The Correlation of Biological Phenomena with Metabolic NMR1 Footprint

Staphylococcus aureus is one of the most prevalent pathogens associated with several types of biofilm-based infections, including infections of chronic wounds. Mature staphylococcal biofilm is extremely hard to eradicate from a wound and displays a high tendency to induce recurring infections. Therefore, in the present study, we aimed to investigate in vitro the interaction between S. aureus biofilm and fibroblast cells searching for metabolites that could be considered as potential biomarkers of critical colonization and infection. Utilizing advanced microscopy and microbiological methods to examine biofilm formation and the staphylococcal infection process, we were able to distinguish 4 phases of biofilm development. The analysis of staphylococcal biofilm influence on the viability of fibroblasts allowed us to pinpoint the moment of critical colonization—12 h post contamination. Based on the obtained model we performed a metabolomics analysis by ¹H NMR spectroscopy to provide new insights into the pathophysiology of infection. We identified a set of metabolites related to the switch to anaerobic metabolism that was characteristic for staphylococcal biofilm co-cultured with fibroblast cells. The data presented in this study may be thus considered a noteworthy but preliminary step in the direction of developing a new, NMR-based tool for rapid diagnosing of infection in a chronic wound.     

Accumulation of Cu(II) cations in poly(3,4-ethylenedioxythiophene) films doped by hexacyanoferrate anions and its application in Cu-selective electrodes with PVC based membranes

Electrochemical properties of poly(3,4-ethylenedioxythiophene) doped with hexacyanoferrate(II,III) ions (PEDOT(HCF)) were studied in the presence of Cu²⁺ ions. Voltammetric and EDAX studies revealed retention of hexacyanoferrate anions in the polymer film and accumulation of Cu(II) cations, as well as formation of solid copper hexacyanoferrate near the polymer surface.Accumulation of Cu²⁺ ions was found to be advantageous from the point of view of PEDOT(HCF) applications as a solid contact (ion-to-electron transducer) in all-solid-state Cu²⁺-selective electrodes with solvent polymeric polyvinyl chloride (PVC) based membrane, containing Cu²⁺-selective ionophore. Binding of Cu²⁺ ions in the conducting polymer layer results in analyte ions flux into the transducer phase. Thus, pronounced enhancement of selectivity of the all-solid-state Cu²⁺-selective electrode or lower detection limit of the potentiometric response range was achieved, reaching under optimised conditions 10⁻⁷ M CuSO₄.     

Bubble Formation at a Rotating Cylindrical Surface in Cross‐Flowing Liquid

A novel method of gas sparging from a rotating cylinder is proposed, which prevents against formation of large attached gas cavities in cross‐flowing liquids including those flowing downwards. Experimental and theoretical results regarding critical rotation speed necessary to remove the attached cavity, bubble formation process and size distribution of the produced bubbles in a low viscosity system (air‐water) are presented in this study.     

Detecting Fixed Patterns in Chordal Graphs in Polynomial Time

The Contractibility problem takes as input two graphs G and H, and the task is to decide whether H can be obtained from G by a sequence of edge contractions. The Induced Minor and Induced Topological Minor problems are similar, but the first allows both edge contractions and vertex deletions, whereas the latter allows only vertex deletions and vertex dissolutions. All three problems are NP-complete, even for certain fixed graphs H. We show that these problems can be solved in polynomial time for every fixed H when the input graph G is chordal. Our results can be considered tight, since these problems are known to be W[1]-hard on chordal graphs when parameterized by the size of H. To solve Contractibility and Induced Minor, we define and use a generalization of the classic Disjoint Paths problem, where we require the vertices of each of the k paths to be chosen from a specified set. We prove that this variant is NP-complete even when k=2, but that it is polynomial-time solvable on chordal graphs for every fixed k. Our algorithm for Induced Topological Minor is based on another generalization of Disjoint Paths called Induced Disjoint Paths, where the vertices from different paths may no longer be adjacent. We show that this problem, which is known to be NP-complete when k=2, can be solved in polynomial time on chordal graphs even when k is part of the input. Our results fit into the general framework of graph containment problems, where the aim is to decide whether a graph can be modified into another graph by a sequence of specified graph operations. Allowing combinations of the four well-known operations edge deletion, edge contraction, vertex deletion, and vertex dissolution results in the following ten containment relations: (induced) minor, (induced) topological minor, (induced) subgraph, (induced) spanning subgraph, dissolution, and contraction. Our results, combined with existing results, settle the complexity of each of the ten corresponding containment problems on chordal graphs.     

Aldol condensation in gaseous phase by zeolite catalysts

Vapour-phase reactions of, in situ, prepared formaldehyde with methyl propionate were studied using X, Y and ZSM-5 zeolite catalysts. Base properties of these zeolites were enhanced by KOH or NaN₃ treatment. The niobium and molybdenum ZSM-5 zeolite supported oxides were also tested for their catalytic activity. The results are discussed in terms of an ability of zeolite catalysts to synthesize methyl methacrylate.     

Seed Selection for Spread of Influence in Social Networks: Temporal vs. Static Approach

The problem of finding optimal set of users for influencing others in the social network has been widely studied. Because it is NP-hard, some heuristics were proposed to find sub-optimal solutions. Still, one of the commonly used assumption is the one that seeds are chosen on the static network, not the dynamic one. This static approach is in fact far from the real-world networks, where new nodes may appear and old ones dynamically disappear in course of time. The main purpose of this paper is to analyse how the results of one of the typical models for spread of influence - linear threshold - differ depending on the strategy of building the social network used later for choosing seeds. To show the impact of network creation strategy on the final number of influenced nodes - outcome of spread of influence, the results for three approaches were studied: one static and two temporal with different granularities, i.e. various number of time windows. Social networks for each time window encapsulated dynamic changes in the network structure. Calculation of various node structural measures like degree or betweenness respected these changes by means of forgetting mechanism - more recent data had greater influence on node measure values. These measures were, in turn, used for node ranking and their selection for seeding. All concepts were applied to experimental verification on five real datasets. The results revealed that temporal approach is always better than static and the higher granularity in the temporal social network while seeding, the more finally influenced nodes. Additionally, outdegree measure with exponential forgetting typically outperformed other time-dependent structural measures, if used for seed candidate ranking.     

Upgrading a Granular Computing Based Data Mining Framework to a Relational Case

One of the popular methods to develop an algorithm for mining data stored in a relational structure is to upgrade an existing attribute‐value algorithm to a relational case. Current approaches to this problem have some shortcomings such as (1) a dependence on the upgrading process of the algorithm to be extended, (2) complicated redefinitions of crucial notions (e.g., pattern generality, pattern refinement), and (3) a tolerant limitation of the search space for pattern discovery. In this paper, we propose and evaluate a general methodology for upgrading a data mining framework to a relational case. This methodology is defined in a granular computing environment. Thanks to our relational extension of a granular computing based data mining framework, the three above problems can be overcome.     

Selective oxidation of ammonia to nitrogen on transition metal containing mixed metal oxides

The selective catalytic oxidation of ammonia to nitrogen (NH₃-SCO) has been studied over hydrotalcite derived mixed metal oxides containing Cu, Co, Fe or Ni. XRD, BET, NH₃-TPD and TPR techniques were used for catalysts characterization. Results of NH₃-SCO were compared with those of selective catalytic reduction of NO with NH₃ (NO-SCR). Reaction mechanism was studied by temperature-programmed surface reaction (TPSR) and activity tests with a various contact time. Catalytic performance of the studied samples depends on both kind and loading of transition metals in the mixed metal oxide system. The Cu-containing samples have been found to be the most active catalysts of the NH₃-SCO process. Transition metal loading strongly influences distribution of ammonia oxidation products. The highest selectivity to N₂ was measured for the catalysts with the lowest transition metal content.