Relation between microstructure and glass transition temperature of poly[(methyl methacrylate)‐co‐(ethyl acrylate)]

The glass transition temperature of a series of samples of the poly[(methyl methacrylate)‐co‐(ethyl acrylate)] copolymer, synthesized at low conversion, were calculated theoretically using the equations of Barton and Johnston. The values obtained are more precise when the probabilities of the compositional diads are derived from the ¹³C NMR data instead of the classical method utilizing reactivity ratios. This can be observed more clearly when the copolymer samples are synthesized at high conversion. Introduction of configuration (tacticity) at the diad level confirms the above observations and slightly improves the calculated values of T_g compared to the initial formulae which were only taking into account the compositional sequences of the copolymer. © 2001 Society of Chemical Industry     

Radiosensitization of Human Leukemic HL-60 Cells by ATR Kinase Inhibitor (VE-821): Phosphoproteomic Analysis

DNA damaging agents such as ionizing radiation or chemotherapy are frequently used in oncology. DNA damage response (DDR)—triggered by radiation-induced double strand breaks—is orchestrated mainly by three Phosphatidylinositol 3-kinase-related kinases (PIKKs): Ataxia teleangiectasia mutated (ATM), DNA-dependent protein kinase (DNA-PK) and ATM and Rad3-related kinase (ATR). Their activation promotes cell-cycle arrest and facilitates DNA damage repair, resulting in radioresistance. Recently developed specific ATR inhibitor, VE-821 (3-amino-6-(4-(methylsulfonyl)phenyl)-N-phenylpyrazine-2-carboxamide), has been reported to have a significant radio- and chemo-sensitizing effect delimited to cancer cells (largely p53-deficient) without affecting normal cells. In this study, we employed SILAC-based quantitative phosphoproteomics to describe the mechanism of the radiosensitizing effect of VE-821 in human promyelocytic leukemic cells HL-60 (p53-negative). Hydrophilic interaction liquid chromatography (HILIC)-prefractionation with TiO₂-enrichment and nano-liquid chromatography—tandem mass spectrometry (LC-MS/MS) analysis revealed 9834 phosphorylation sites. Proteins with differentially up-/down-regulated phosphorylation were mostly localized in the nucleus and were involved in cellular processes such as DDR, all phases of the cell cycle, and cell division. Moreover, sequence motif analysis revealed significant changes in the activities of kinases involved in these processes. Taken together, our data indicates that ATR kinase has multiple roles in response to DNA damage throughout the cell cycle and that its inhibitor VE-821 is a potent radiosensitizing agent for p53-negative HL-60 cells.     

Hydroprocesssing of light gas oil — rape oil mixtures

Two series of experiments of hydroprocessing of light gas oil - rape oil mixtures were carried out. The reactor feed was composed of raw material: first series — 10 wt.% rape oil and 90 wt.% of diesel oil; second series — 20 wt.% rape oil and 80 wt.% of diesel oil.     

Changes in Molecular Characteristics of Cereal Carbohydrates after Processing and Digestion

Different extraction, purification and digestion methods were used to investigate the molecular properties of carbohydrates in arabinoxylan and β-glucan concentrates, dietary fiber (DF) rich breads and ileum content of bread fed pigs. The breads studied were: a low DF wheat bread (WF), whole meal rye bread (GR), rye bread with kernels (RK), wheat bread supplemented with wheat arabinoxylan concentrate (AX) and wheat bread supplemented with oat β-glucan concentrate (BG). The weight average molecular weight (M_w) of extractable carbohydrates in β-glucan concentrate decreased eight-fold after inclusion in the BG bread when exposed to in vitro digestion, while the M_w of purified extractable carbohydrates in AX bread was reduced two-fold, and remained almost unaffected until reaching the terminal ileum of pigs. Similarly, the M_w of purified extractable carbohydrates in GR and RK bread was not significantly changed in the ileum. The AX bread resulted in the highest concentration of dissolved arabinoxylan in the ileum among all the breads that caused a substantial increased in ileal AX viscosity. Nevertheless, for none of the breads, the M_w of extractable carbohydrates was related neither to the bread extract nor ileal viscosity.     

Distance field computation for geological slab surface data sets

The three-dimensional shapes of tectonic plates that sink into the Earth’s mantle (slabs) are the starting point for a range of geoscience studies, from determining the forces driving the motion of tectonic plates, to potential seismic and tsunami hazards, to the sources of magmas beneath active volcanos. For many of these applications finite element methods are used to model the deformation or fluid flow, and therefore the input model parameters, such as feature geometries, temperature or viscosity, must be defined with respect to a smooth, continuous distance field around the slab. In this paper we present a framework for processing sparse and noisy seismic data (earthquake locations), defining the shape of the slab and computing a continuous distance function on a mesh with variable node spacing. Due to the inhomogeneous volumetric distribution of earthquakes within the slab and significant inaccuracies in the locations of earthquakes occurring hundreds of kilometers below the Earth’s surface, the seismicity data set is extremely noisy and incomplete. Therefore, the preprocessing is the major part of the framework consisting of several steps including a point based smoothing procedure, a powerful method to use other observational constraints on slab location (e.g., seismic tomography or geologic history) to extend of the slab shape beyond earthquake data set and continuous resampling using moving least squares method. For the preprocessed point data we introduce approaches for finding the three-dimensional boundary of the slab and a subdivision of the slab into quadric implicit polynomials. The resulting distance field is then compiled from distances to the piecewise continuous approximation of the slab and distances to slab boundary.     

Fast automatic registration of range images from 3D imaging systems using sphere targets

The use of 3D imaging systems (e.g., laser scanners) in construction has grown significantly in the past decade. Range images acquired with such systems often require registration. This paper describes an automatic method to rapidly locate spheres and perform a registration based on three pairs of matching points (centers of fitted spheres) in two range images. The proposed method is directly applicable for regularly gridded datasets obtained with instruments that are typically used for construction applications and whose maximum ranges are greater than 50 m. A lab was scanned from two locations at three different scan densities. Four spheres were located in the lab, and the total number of points hitting the four spheres was a small fraction (< 0.01%) of all the points in the dataset. At the highest scan density, the registration of two datasets with 6.4 × 10⁶ and 3.4 × 10⁶ points is obtained in less than 30 s. At the medium scan density, two range images with 1.6 × 10⁶ and 0.8 × 10⁶ points can be registered in less than 2 s.     

Colony-blot assay with anti-p60 antibodies as a method for quick identification of Listeria in food

The present study evaluated the ability to isolate Listeria from foods, using shortened procedure of sample enrichment followed by immunomagnetic separation or filtration methods, and serological identification of isolated bacteria by colony-blot and Western blot methods with anti-p60 antibodies. By these rapid methods, identification of Listeria was achieved in much shorter time (40-48 h) than with standard cultivation and biochemical identification procedures. The rapid methods used are easy to perform and, what is most important, their specificity is very high and fulfills the expectations. The possibility to select Listeria colonies growing on non-selective media by blotting with anti-p60 antiserum seems to be particularly valuable in examination of food samples containing/not too many Listeria (1-10 CFU/25 g). However, the blot method using anti-PepD mAb specific to unique region of L. monocytogenes p60 is necessary to distinguish L. monocytogenes from other Listeria species.     

Learning parallel portfolios of algorithms

A wide range of combinatorial optimization algorithms have been developed for complex reasoning tasks. Frequently, no single algorithm outperforms all the others. This has raised interest in leveraging the performance of a collection of algorithms to improve performance. We show how to accomplish this using a Parallel Portfolio of Algorithms (PPA). A PPA is a collection of diverse algorithms for solving a single problem, all running concurrently on a single processor until a solution is produced. The performance of the portfolio may be controlled by assigning different shares of processor time to each algorithm. We present an effective method for finding a PPA in which the share of processor time allocated to each algorithm is fixed. Finding the optimal static schedule is shown to be an NP-complete problem for a general class of utility functions. We present bounds on the performance of the PPA over random instances and evaluate the performance empirically on a collection of 23 state-of-the-art SAT algorithms. The results show significant performance gains over the fastest individual algorithm in the collection.      

Improved Approximation Algorithms for the Quality of Service Multicast Tree Problem

The Quality of Service Multicast Tree Problem is a generalization of the Steiner tree problem which appears in the context of multimedia multicast and network design. In this generalization, each node possesses a rate and the cost of an edge with length l in a Steiner tree T connecting the source to non-zero rate nodes is l · r_e, where r_e is the maximum node rate in the component of T-{e} that does not contain the source. The best previously known approximation ratios for this problem (based on the best known approximation factor of 1.549 for the Steiner tree problem in networks) are 2.066 for the case of two non-zero rates and 4.212 for the case of an unbounded number of rates. In this paper we give improved approximation algorithms with ratios of 1.960 and 3.802, respectively. When the minimum spanning tree heuristic is used for finding approximate Steiner trees, then the previously best known approximation ratios of 2.667 for two non-zero rates and 5.542 for an unbounded number of rates are reduced to 2.414 and 4.311, respectively.