Antibiotic resistance of coagulase-negative staphylococci associated with food and used in starter cultures

The resistance of 330 coagulase-negative staphylococci (CNS) associated with food or used in starter cultures and belonging to the species Staphylococcus carnosus, Staphylococcus condimenti, Staphylococcus piscifermentans, Staphylococcus equorum, Staphylococcus succinus and Staphylococcus xylosus, against 21 antibiotics was determined using the disk diffusion method. The incidence and number of resistances was found to be species and source of isolation dependent. Most strains of S. equorum (63%), S. succinus (90%) and S. xylosus (95%) exhibited resistances against up to seven antibiotics, whereas only few strains of S. carnosus (12%) and S. piscifermentans (27%) were antibiotic resistant. Resistances to lincomycin, penicillin, fusidic acid, oxacillin, ampicillin and tetracycline were predominant. Among strains of S. xylosus, the incidence of resistance ranged from 22% for tetracycline up to 69% for penicillin. Concerning the source of isolation, resistances were often determined in strains of S. equorum, S. succinus and S. xylosus isolated from cheese (87%) and sausage (83%), and strains of S. xylosus obtained from meat starter cultures (93%). Remarkably, all CNS were sensitive to the clinically important antibiotics chloramphenicol, clindamycin, cotrimoxazol, gentamicin, kanamycin, linezolid, neomycin, streptomycin, synercid and vancomycin. The phenotypic resistances to ss-lactam antibiotics, lincomycin and tetracycline were verified by PCR amplification and could be traced back to the genes blaZ, lnuA and tetK, respectively. This study permitted a comprehensive insight into the incidence of antibiotic resistances in food-associated CNS.     

A Comparison of Fresh Frozen vs. Formalin-Fixed,Paraffin-Embedded Specimens of Canine Mammary Tumors via Branched-DNA Assay

Mammary neoplasms are the tumors most affecting female dogs and women. Formalin-fixed, paraffin-embedded (FFPE) tissues are an invaluable source of archived biological material. Fresh frozen (FF) tissue is considered ideal for gene expression analysis. However, strategies based on FFPE material offer several advantages. Branched-DNA assays permit a reliable and fast workflow when analyzing gene expression. The aim of this study was to assess the comparability of the branched-DNA assay when analyzing certain gene expression patterns between FF and FFPE samples in canine mammary tumors. RNA was isolated from 109 FFPE samples and from 93 FF samples of different canine mammary tissues. Sixteen (16) target genes (Tp53; Myc; HMGA1; Pik3ca; Mcl1; MAPK3; FOXO3; PTEN; GATA4; PFDN5; HMGB1; MAPK1; BRCA2; BRCA1; HMGA2; and Her2) were analyzed via branched-DNA assay (b-DNA). ACTB, GAPDH, and HPRT1 were used as data normalizers. Overall, the relative gene expression of the two different origins of samples showed an agreement of 63%. Still, care should be taken, as FFPE specimens showed lower expression of the analyzed targets when compared to FF samples. The fact that the gene expression in FFPE proved to be lower than in FF specimens is likely to have been caused by the effect of storage time. ACTB had the best performance as a data normalizer.     

Characterization of activated sludge flocs by confocal laser scanning microscopy and image analysis

In this study we present a new approach to determine volumes, heterogeneity factors, and compositions of the bacterial population of activated sludge flocs by 3D confocal imaging. After staining the fresh flocs with fluorescein-isothiocyanate, 75 stacks of images (containing approx. 3000 flocs) were acquired with a confocal laser scanning microscope. The self-developed macro 3D volume and surface determination for the KS 400 software package combined the images of one stack to a 3D image and calculated the real floc volume and surface. We determined heterogeneity factors like the ratio of real floc surface to the surface of a sphere with the respective volume and the fractal dimension (D(f)). According to their significant influence on floc integrity and quality, we also investigated the chemical composition of flocs and quantified their bacterial population structure by using group-specific rRNA-targeted probes for fluorescence in situ hybridization. By a settling experiment we enriched flocs with poor settling properties and determined the above-mentioned parameters. This approach revealed shifts in floc volume, heterogeneity, and bacterial and chemical composition according to the settling quality of the flocs.     

Scouring at Bed Sills as a Response to Flash Floods

The temporal development of clear-water local scour depth at bed sills in uniform gravel beds is considered. Experiments are presented on the development of scour holes under unsteady hydraulic conditions, with the triangular-shaped hydrographs tested being of different durations and different rates of flow variation. Based on the experimental results and a theoretical framework, a method is given for the definition and prediction of the scouring process under unsteady flows in terms of a dimensionless temporal parameter. A “flash flood” is here defined as an event for which the scour doesn’t attain its potential magnitude, i.e., the equilibrium value for the peak hydrograph flow rate. This flood nature is dependent on both the characteristics of the flood event itself and the characteristics of the stream. A quantitative measure of what constitutes a flash flood is given in terms of the identified temporal parameter. Results show that the ratio between the final scour depth and the potential scour depth at a bed sill for a given hydrograph can be estimated as a function of the identified temporal parameter.     

Recent Experiences with Listeria monocytogenes in New Zealand and development of a food control risk-based strategy

A risk-based strategy for Listeria monocytogenes has been developed by New Zealand Food Safety Authority. Incidents of L. monocytogenes in ready-to-eat foods reported to the regulatory authority were analysed to identify common factors that contributed to the contamination. In addition, the current regulatory framework and available food industry guidance were reviewed to prepare a strategy that will provide a consistent and informed approach to managing the risk of L. monocytogenes. Also recognised is the future impact of an aging population and an increase in the availability and range of chilled ready-to-eat foods that should be integrated into the strategy if an objective of ‘no increase in the reported incidence of foodborne listeriosis after five years’ is to be achieved.     

Effects of genotype and sowing date on phytostanol–phytosterol content and agronomic traits in wheat under organic agriculture

Cereals are an important source of sterols and stanols in the human diet. The present study underlines the effect of genotype and weather conditions in bread wheat, on total sterol and stanol content (TSS), agronomic traits, proteins and ash content under organic conditions. Variations in TSS as well as other characters between two sowing dates were observed. A broad genotypic variability was also reported since extreme genotypes differed by more than 30 mg 100 g⁻¹ DW for TSS, with total stanol content varying twofold. Moreover, two groups of genotypes that differed in agronomic production, ash and protein content were depicted, based on their response to an increase in temperature. This result suggests that the genotypic factor prevails over the sowing date factor for determining sterol and stanol traits in wheat cultivated under organic conditions. Nevertheless, a strong interaction exists between the two factors, which can be used to drive bioaccumulation of these molecules.     

Induction time studies of calcium carbonate in ethylene glycol and water

Induction time for precipitation of calcium carbonate precipitated in mono ethylene glycol and water has been studied by conductivity measurements at ethylene glycol concentrations of 0–90 wt% and temperatures from 25 to 80 °C. The supersaturation ratios, S, were in the range of 3–10. The effect of the solvent was separated from the effect of the supersaturation and temperature. Increasing the concentration of ethylene glycol prolongs the induction times for precipitation of CaCO₃ considerably although the supersaturation actually increases, especially at lower temperatures. It was shown that this effect cannot be explained by the change in the interfacial tension. Induction time studies in seeded and unseeded experiments were performed in order to separate changes in the nucleation rate from the impact of the growth time in the varying solvent compositions. The results show that crystal growth is retarded, causing the increased induction time in ethylene glycol containing solutions, and hence that the nucleation rate is actually promoted by ethylene glycol. The nucleation rates determined by measured particle numbers and induction times from unseeded experiments were underestimated for the same reason, thereby illustrating the complexity of nucleation rate investigations in mixed solvents.     

Optimal packing of material flow on conveyor belts

We are interested in an optimal packing density problem for material flows on conveyor belts in two spatial dimensions. The control problem is concerned with the initial configuration of parts on the belt to ensure a high overall flow rate and to further reduce congestion. An adjoint approach is used to compare the optimization results from the microscopic model based on a system of ordinary differential equations with the corresponding macroscopic model relying on a hyperbolic conservation law. Computational results highlight similarities and differences of both optimization models and emphasize the benefits of the macroscopic approach.     

Composition of the product of algal culture in the liquid phase of animal slurry

The composition of the product of algal culture in the liquid phase of slurry has been examined. The material consists of cells of the cultured alga (Chlorella vulgaris) together with those of the endogenous microbial community, and contains approximately 42% true protein, 23% carbohydrate, 16% lipid and 9% nucleic acid. The protein is deficient in the sulphur amino acids but rich in lysine. The latter feature appears to be related to the presence of hexanoic acid in slurry. The endogenous microorganisms do not make a significant direct contribution to the composition of material harvested after algal culture. Light and temperature have only slight effects upon composition of the harvested material.