Deconvolution Combined with Digital Colocalization Analysis to Study the Spatial Distribution of Tight and Adherens Junction Proteins

The relative spatial distribution of proteins was investigated with immunofluorescent methods by confocal laser scanning microscopy and digital image restoration. For confocal data sets recorded with a voxel dimension of 50 × 50 × 150 nm noise and blur can be decreased and the resolution in the z-axis increased by applying the maximum likelihood estimation algorithm of the Huygens software. This approach was successfully applied to the study of tight and adherens junctions in relation to the actin cytoskeleton in Madin Darby Canine Kidney cells. Colocalization analysis was done for pairs of probes using a histogram-based method. F-actin, occludin, zonula occludens 1, and E-cadherin were included in the study. Double-labeled preparations were used. The combination of deconvolution with the colocalization of confocal data sets offers a powerful tool to investigate the spatial arrangement of proteins.     

Thermal and electrical behavior of polyimide/silica hybrid thin films

Silica‐containing polyimide films were prepared by sol‐gel technique using a poly(amic acid) and tetraethoxysilane. The poly(amic acid) was synthesized by solution polycondensation reaction of 4,4′‐oxydiphthalic anhydride with 2,6‐bis(3‐aminophenoxy)benzene and an aminosilane coupling agent, 3‐aminopropyltriethoxysilane. The properties of these films, such as water vapors sorption capacity, dynamic contact angles and contact angle hysteresis, thermal, and electrical behavior have been evaluated with respect to their structure. The polymer films exhibited good thermal stability having the initial decomposition temperature above 450°C, glass transition temperature in the range of 223?228°C, and low‐dielectric constant in the range of 2.64?3.16. Two subglass transitions, γ and β, were evidenced by dynamic mechanical analysis and dielectric spectroscopy. The surface morphology and the roughness were investigated by atomic force microscopy and scanning electron microscopy. POLYM. ENG. SCI., 2010. © 2009 Society of Plastics Engineers     

Increase of regression speed of combustion through oxidizer doping

This paper presents an innovative method to increase the regression speed of a solid fuel grain by using oxidizer doping. The results obtained on a propulsion application showing the performance parameters as an output of a numerical model are provided. Two models are given that predict the regression speed increase for embedding wires and for oxidizer doping with a factor of ～2 to 3. Also, it is shown that this increase of the regression speed by using a low oxidizer doping percentage, which is based on the assumption that at a higher doping rate the combustion instabilities, can lead to detonations. Next, a thermochemical model for the combustion within the oxidizer doping model is afforded. For this model, the burn is assumed to take place around the surface of each of the oxidizer particles, being composed of two different burning processes: one is the burning on the surface of the solid fuel grain and the other is the burning between the solid fuel and the solid oxidizer. For a non-doped fuel grain, the burning takes place only on the surface of the fuel grain. Finally, a potential application of such propulsion units to small satellite launchers is presented, and a case study of such a vehicle intended to place a 50 kg payload on a low earth orbit (300 to 500 km altitude) is described. The modelling proposed is based on the assumption that the use of solid methane makes this launcher environmentally friendly.     

Two Sources Are Better than One for Increasing the Kolmogorov Complexity of Infinite Sequences

The randomness rate of an infinite binary sequence is characterized by the sequence of ratios between the Kolmogorov complexity and the length of the initial segments of the sequence. It is known that there is no effective procedure that transforms one input sequence into another sequence with higher randomness rate. By contrast, we display such a uniform effective procedure having as input two independent sequences with positive but arbitrarily small constant randomness rate. Moreover the transformation is a truth-table reduction and the output has randomness rate arbitrarily close to 1.     

Evidence of Tin Oxide Recrystallization in Opacified Lead Glazes

Tin oxide (SnO₂) particles that are a few hundred nanometers in size and are embedded in a lead glaze act as a white opacifier. The insolubility of SnO₂ particles in a lead glaze is responsible for this microstructure. Although it is assumed that SnO₂ particles do not react during the glaze formation, we demonstrate that the development of metastable phases prior to the fusion of the PbO-SiO₂-SnO₂ mixture allows the SnO₂ particles to react and then recrystallize subsequent to the fusion of the mixture. The recrystallization of SnO₂ occurs during heating and/or cooling until the temperature is sufficiently low and/or the tin supply is exhausted.     

A study on common malware families evolution in 2012

With the exponential growth of malware in the last 5 years, the number of polymorphic malware increased as well. The aim of this paper is to describe the evolution throughout a year of four major malware families (FakeAlert, Sirefef, ZBot and Vundo). The analysis has been made in terms of polymorphic mechanisms with regards to the polymorphic mechanisms (such as changes in the packer module, changes in the geometry of file, variation of version information from the resource directory or different methods used to modify the icon of one file) which have been used in order to avoid their detection by anti-malware systems. The malware files were collected every week throughout one year’s time. For each family we have recorded the new variants and the updates that were added to the old ones in order to avoid detection. We have managed to examine more than 1,000 new versions of such files. The current article includes an additional study case. The latter focuses on the methods that have been used by the FakeAlert malware family in order to modify their icons.     

Spectroscopic Studies of Model Photo-Receptors: Validation of a Nanosecond Time-Resolved Micro-Spectrophotometer Design Using Photoactive Yellow Protein and α-Phycoerythrocyanin

Time-resolved spectroscopic experiments have been performed with protein in solution and in crystalline form using a newly designed microspectrophotometer. The time-resolution of these experiments can be as good as two nanoseconds (ns), which is the minimal response time of the image intensifier used. With the current setup, the effective time-resolution is about seven ns, determined mainly by the pulse duration of the nanosecond laser. The amount of protein required is small, on the order of 100 nanograms. Bleaching, which is an undesirable effect common to photoreceptor proteins, is minimized by using a millisecond shutter to avoid extensive exposure to the probing light. We investigate two model photoreceptors, photoactive yellow protein (PYP), and α-phycoerythrocyanin (α-PEC), on different time scales and at different temperatures. Relaxation times obtained from kinetic time-series of difference absorption spectra collected from PYP are consistent with previous results. The comparison with these results validates the capability of this spectrophotometer to deliver high quality time-resolved absorption spectra.     

Lattice Monte Carlo simulations as link between ab-initio calculations and macroscopic behavior of dopants and defects in silicon

In this work, we show that lattice Monte Carlo simulations can be used to span the time and distance scales between underlying atomistic processes and macroscopic diffusion behavior. We use ab- initio calculations of binding energies versus configuration to calculate hopping rates of vacancies for use in lattice Monte Carlo (LMC) simulations of diffusion and aggregation in silicon. The LMC simulations consider the biased nature of vacancy hop frequencies in the neighborhood of dopants, with interactions up to sixth-nearest- neighbor distances included. We use these simulations to investigate the expected macroscopic diffusion behavior, as well as the process by which dopant/defect aggregation occurs. Specific phenomena investigated include collective behavior leading to greatly enhanced diffusivity at high doping levels, the time dependence of effective diffusivity due to the formation of dopant/vacancy clusters, and dopant fluxes in the presence of a vacancy gradient.     

3D Radiation Therapy Boost Improves the Outcome of Whole Brain Radiation Therapy Treated RPA II Patients with One or Two Brain Metastases

Purpose

to evaluate the role of whole brain radiotherapy (WBRT) and radiation boost (RB) for 208 patients recursive partitioning analysis (RPA) II with 1 or 2 brain metastases (BM) at a single institution.

Methods and Materials

the dose of WBRT was 30 Gy (10 fractions of 3 Gy). One hundred thirty-two patients (63.5%) benefited from RB of 9 Gy in 3 fractions of 3 Gy at the metastatic site. Patients had 1 or 2 BM in 122 (58.7%) and 86 cases (41.3%), respectively.

Results

patients with one or two metastases had similar survival (4.6 and 5.1 months, respectively) (p = 0.4). Median overall survival (OS) for patients treated with WBRT and RB, and with WBRT alone was 5.9 and 3.7 months, respectively (p = 0.03). The 6-, 12- and 24-month OS rates after WBRT and RB were 48.5%, 25% and 10.6%, respectively, while WBRT alone resulted in OS rates of 34%, 22.4% and 3.2%, respectively (p = 0.03). After WBRT and RB, the 6-, 12- and 24-month local control rates were 92%, 82% and 67%, respectively, while they were 81.2%, 75% and 37.5%, respectively, after WBRT alone (p = 0.03). The 6-, 12- and 24-month brain control rates after WBRT and RB were 88.7%, 75.8% and 62%, respectively, and after WBRT alone they were 78.5%, 59% and 37.7%, respectively (p = 0.03).

Conclusion

additional boost delivered with 3D conformal radiotherapy improves local and brain control rates significantly as well as overall survival for RPA II patients with 1 or 2 unresectable BM.     

Enhanced antibacterial effect of silver nanoparticles obtained by electrochemical synthesis in poly(amide-hydroxyurethane) media

In the present study, we report enhanced antimicrobial properties of 29 and 23 nm silver nanoparticles (Ag NPs) obtained by electrochemical synthesis in poly(amide-hydroxyurethane) media. Antibacterial activity assessed by disk diffusion method indicates that silver nanoparticles produced inhibition zones for both Escherichia coli and Staphylococcus aureus depending on silver concentration. The bacterial growth curve performed in the presence of silver nanoparticles showed a stronger antibacterial effect at lower concentrations than those described in the earlier reports. The effect was both dose and size dependent and was more pronounced against Gram negative bacteria than Gram positive one. The smallest Ag NPs used had a bactericidal effect resulting in killing E. coli cells. Scanning electron microscopy analysis indicated major damage and morphology changes of the silver nanoparticles treated bacterial cells. The major mechanism responsible for the antibacterial effect probably consists in clusters formation and nanoparticles anchorage to the bacterial cell surface.