A numerical filtering method for linear state-space models with Markov switching

A class of discrete-time random processes arising in engineering and econometrics applications consists of a linear state-space model whose parameters are modulated by the state of a finite-state Markov chain. Typical filtering approaches are collapsing methods, which approximate filtered distributions by mixtures of Gaussians, each Gaussian corresponding to one possibility of the recent history of the Markov chain, and particle methods. This article presents an alternative approach to filtering these processes based on keeping track of the values of the underlying filtered density and its characteristic function on grids. We prove that it has favorable convergence properties under certain assumptions. On the other hand, as a grid method, it suffers from the curse of dimensionality, and so is only suitable for low-dimensional systems. We compare our method to collapsing filters and a particle filter with examples, and find that it can outperform them on 1- and 2-dimensional problems, but loses its speed advantage on 3-dimensional systems. Meanwhile, our method has a proven theoretical convergence rate that is probably not achieved by collapsing and particle methods.     

Combination of levulinic acid and sodium dodecyl sulfate on inactivation of foodborne microorganisms: A review

Abstract

The combination of levulinic acid and sodium dodecyl sulfate (SDS) in recent years has shown considerable promise as an antimicrobial intervention. Both ingredients have been designated by the U.S. Food and Drug Administration (FDA) as Generally Recognized as Safe (GRAS) for being used as a flavoring agent and multipurpose food additive, respectively. The use of levulinic acid and SDS alone has limited antimicrobial efficacy on tested microorganisms, and synergism between levulinic acid and SDS has been observed. The postulated mechanism of action of the synergistic effect is presented. The antimicrobial efficacy of levulinic acid plus SDS remains high even when organic materials are present. The other features, including penetration, foamability, and being readily soluble, extend its potential applications to disinfection of difficult-to-access areas and control of foodborne pathogens both in a planktonic state and in a biofilm. These features indicate that the levulinic acid plus SDS combination may have the potential to be applied within the food processing environment on a large scale.     

Mycotoxin exposure and human cancer risk: A systematic review of epidemiological studies

In recent years, there has been an increasing interest in investigating the carcinogenicity of mycotoxins in humans. This systematic review aims to provide an overview of data linking exposure to different mycotoxins with human cancer risk. Publications (2019 and earlier) of case–control or longitudinal cohort studies were identified in PubMed and EMBASE. These articles were then screened by independent reviewers and their quality was assessed according to the Newcastle–Ottawa scale. Animal, cross‐sectional, and molecular studies satisfied criteria for exclusion. In total, 14 articles were included: 13 case–control studies and 1 longitudinal cohort study. Included articles focused on associations of mycotoxin exposure with primary liver, breast, and cervical cancer. Overall, a positive association between the consumption of aflatoxin‐contaminated foods and primary liver cancer risk was verified. Two case–control studies in Africa investigated the relationship between zearalenone and its metabolites and breast cancer risk, though conflicting results were reported. Two case–control studies investigated the association between hepatocellular carcinoma and fumonisin B1 exposure, but no significant associations were observed. This systematic review incorporates several clear observations of dose‐dependent associations between aflatoxins and liver cancer risk, in keeping with IARC Monograph conclusions. Only few human epidemiological studies investigated the associations between mycotoxin exposures and cancer risk. To close this gap, more in‐depth research is needed to unravel evidence for other common mycotoxins, such as deoxynivalenol and ochratoxin A. The link between mycotoxin exposures and cancer risk has mainly been established in experimental studies, and needs to be confirmed in human epidemiological studies to support the evidence‐based public health strategies.     

Sex ratio and reproduction of invasive red devil, (Amphilophus labiatus: Cichlidae) in Lake Sentani,Indonesia

The Red Devil Cichlid Amphilophus labiatus (Günther 1864), native to Lake Nicaragua and Lake Managua in Central America, is widely cultivated as an attractive, yet aggressive, aquarium fish that has been introduced to several freshwater locations around the world. It was recently introduced into Lake Sentani in Indonesian New Guinea, a naturally rich aquatic habitat home exhibiting a diverse fauna with high endemism. To better understand the invasive potential and impacts of A. labiatus, the present study was undertaken to describe the sex ratio and reproductive potential of A. labiatus in Lake Sentani through determination of its gonad maturation stages, gonado‐somatic index and fecundity. The fish were collected using floating gill nets at six locations around the lake between June and August 2019. Sex identification, gonads type, gonad stage and weight, fecundity were observed in the laboratory. Of the total 542 of A. labiatus collected during the survey, 345 individuals were sampled for sex ratio and reproduction. The overall male:female ratio was skewed towards males in a ratio of 3.28:1. The males were generally found to be in the gonad maturation stage I, while the females were commonly found in gonad maturation stages III and IV for all sampling locations during the study period. The highest male mean GSI value was found for the Yakonde site (0.24 ± 0.21) and at the Ayapo site (1.11 ± 1.01) for the females, with a fecundity of 191–2,720 eggs. The fish have spread to most parts of the lake, being conditioned to potentially spawn at any location, thereby providing an explanation for the observed rapid increase of the A. labiatus population over the last ten years. The results of the present study suggest a high invasive potential for this species in this and other similar lake habitats, warning that their careful management should be undertaken to restrict their further spread in Indonesia and elsewhere.     

Thermal characteristics of an air-cooled open-cathode proton exchange membrane fuel cell stack via numerical investigation

In light of stricter emissions regulations and depleting fossil fuel reserves, fuel cell vehicles (FCVs) are one of the leading alternatives for powering future vehicles. An open-cathode, air-cooled proton exchange membrane fuel cell (PEMFC) stack provides a relatively simple electric generation system for a vehicle in terms of system complexity and number of components. The temperature within a PEMFC stack is critical to its level of performance and the electrochemical efficiency. Previously created computational models to study and predict the stack temperature have been limited in their scale and the inaccurate assumption that temperature is uniform throughout. The present work details the creation of a numerical model to study the temperature distribution of an 80-cell Ballard 1020ACS stack by simulating the cooling airflow across the stack. Using computational fluid dynamics, a steady-state airflow simulation was performed using experimental data to form boundary conditions where possible. Additionally, a parametric study was performed to investigate the effect of the distance between the stack and cooling fan on stack performance. Model validation was performed against published results. The temperature distribution across the stack was identical for the central 70% of the cells, with eccentric temperatures observed at the stack extremities, while the difference between coolant and bipolar plate temperatures was approximately 10°C at the cooling channel outlets. The results of the parametric study showed that the fan-stack distance has a negligible effect on stack performance. The assumptions regarding stack temperature uniformity and measurement were challenged. Lastly, the hypothesis regarding the negligible effect of fan-stack distance on stack performance was confirmed.     

A Click-Chemistry-Based Enrichable Crosslinker for Structural and Protein Interaction Analysis by Mass Spectrometry

Mass spectrometry is the method of choice for the characterisation of proteomes. Most proteins operate in protein complexes, in which their close association modulates their function. However, with standard MS analysis, information on protein–protein interactions is lost and no structural information is retained. To gain structural and interactome data, new crosslinking reagents are needed that freeze inter- and intramolecular interactions. Herein, the development of a new reagent, which has several features that enable highly sensitive crosslinking MS, is reported. The reagent enables enrichment of crosslinked peptides from the majority of background peptides to facilitate efficient detection of low-abundant crosslinked peptides. Due to the special cleavable properties, the reagent can be used for MS² and potentially for MS³ experiments. Thus, the new crosslinking reagent, in combination with high-end MS, should enable sensitive analysis of interactomes, which will help researchers to obtain important insights into cellular states in health and diseases.     

Nitroreductase-Mediated Release of Inhibitors of Lysine-Specific Demethylase 1 (LSD1) from Prodrugs in Transfected Acute Myeloid Leukaemia Cells

Lysine-specific demethylase 1 (LSD1) has evolved as a promising therapeutic target for cancer treatment, especially in acute myeloid leukaemia (AML). To approach the challenge of site-specific LSD1 inhibition, we developed an enzyme-prodrug system with the bacterial nitroreductase NfsB (NTR) that was expressed in the virally transfected AML cell line THP1-NTR⁺. The cellular activity of the NTR was proven with a new luminescent NTR probe. We synthesised a diverse set of nitroaromatic prodrugs that by design do not affect LSD1 and are reduced by the NTR to release an active LSD1 inhibitor. The emerging side products were differentially analysed using negative controls, thereby revealing cytotoxic effects. The 2-nitroimidazolyl prodrug of a potent LSD1 inhibitor emerged as one of the best prodrug candidates with a pronounced selectivity window between wild-type and transfected THP1 cells. Our prodrugs are selectively activated and release the LSD1 inhibitor locally, proving their suitability for future targeting approaches.     

Extruded meat alternatives made from Maillard-reacted beef bone hydrolysate and plant proteins: part I – Effect of moisture content

This study investigated the effects of moisture content (MC) on the physicochemical properties of extruded meat alternatives made from Maillard-reacted beef bone hydrolysate and plant proteins. Samples were extruded at 170 °C (maximum barrel temperature), at 3.6 kg h⁻¹ (liquid feed rate) and at 1.8, 2.2, 2.6 and 3.0 kg h⁻¹ (dry feed rates) to obtain MC of 60%MC, 56%MC, 52%MC and 49%MC, respectively. Meat alternatives at 52%MC showed the greatest degree of texturisation. However, meat alternatives at 49%MC were the closest in terms of both textural and microstructural properties to reference sample, boiled chicken breast. Results from protein solubility suggested that a large amount of aggregated proteins were associated with hydrogen bonds, while disulphide bonds were the main contributor in the formation of fibrous structure in meat alternatives. Results showed that the change in MC as process parameter played an important role in the formation of fibrous structure in extruded meat alternatives.