Effect of Thermal Treatment on the Amplification and Quantification of Transgenic and Non-transgenic Soybean and Maize DNA

Processing of raw plant materials causes occurrence of degraded DNA in foods. The effect of DNA degradation on amplification and quantification of transgenic and non-transgenic DNA in raw and experimentally thermally processed foods was studied. The degree of DNA degradation was checked by agarose gel electrophoresis and polymerase chain reaction (PCR). Cetyl trimethyl ammonium bromide method yielded DNA of a better quality, while Genespin and Wizard were less appropriate. Baking at 220 °C considerably reduced the size of DNA fragments. In order to measure the length of amplifiable DNA, primers for soybean and maize genes were used. Small DNA fragments ranging from 100 to 200 bp were amplified in all samples. DNA fragments over 1 kbp were amplified only if heating at 220 °C lasted less than 30 min. Baking of flour (220 °C) reduced the size of extracted DNA fragments so that 1,100 bp amplicon was no longer amplifiable, while the amplicons of 913 and 1,100 bp were obtained from the baked bread. When PCR assays targeting maize high mobility group and zein genes were used under the same conditions, analogous results were achieved. Quantification of genetically modified organism content was not influenced by baking.     

The interaction of thin polyaniline films with various H‐phosphonates: Spectroscopy and quantum chemical calculations

The conducting form of polyaniline (PANI) is formed by doping of non‐conducting PANI base usually by protonic acids. An alternative way of doping, consisting in an interaction via hydrogen bonding, has been previously proven for H‐phosphonates. In this study, PANI base films are exposed to various H‐phosphonates, changes in the structure of the films are analyzed by ultraviolet–visible, infrared, and Raman spectroscopies and spectroscopic data are compared with quantum chemical calculations. According to our results, the interaction of the PANI base films with H‐phosphonates is realized by hydrogen bonding between the imine nitrogen of PANI and the hydroxy group of the H‐phosphonate tautomeric form, i.e., phosphite. This is in the contrast to the PANI powders doped with H‐phosphonates where both interacting phosphite and non‐interacting H‐phosphonate forms were observed. © 2018 Wiley Periodicals, Inc. J. Appl. Polym. Sci. 2018 , 135, 46728.     

Succinic Semialdehyde Dehydrogenase Deficiency: In Vitro and In Silico Characterization of a Novel Pathogenic Missense Variant and Analysis of the Mutational Spectrum of ALDH5A1

Succinic semialdehyde dehydrogenase deficiency (SSADHD) is a rare, monogenic disorder affecting the degradation of the main inhibitory neurotransmitter γ-amino butyric acid (GABA). Pathogenic variants in the ALDH5A1 gene that cause an enzymatic dysfunction of succinic semialdehyde dehydrogenase (SSADH) lead to an accumulation of potentially toxic metabolites, including γ-hydroxybutyrate (GHB). Here, we present a patient with a severe phenotype of SSADHD caused by a novel genetic variant c.728T > C that leads to an exchange of leucine to proline at residue 243, located within the highly conserved nicotinamide adenine dinucleotide (NAD)⁺ binding domain of SSADH. Proline harbors a pyrrolidine within its side chain known for its conformational rigidity and disruption of protein secondary structures. We investigate the effect of this novel variant in vivo, in vitro, and in silico. We furthermore examine the mutational spectrum of all previously described disease-causing variants and computationally assess all biologically possible missense variants of ALDH5A1 to identify mutational hotspots.     

One-Dimensional Nanostructures of Polypyrrole for Shielding of Electromagnetic Interference in the Microwave Region

Polypyrrole one-dimensional nanostructures (nanotubes, nanobelts and nanofibers) were prepared using three various dyes (Methyl Orange, Methylene Blue and Eriochrome Black T). Their high electrical conductivity (from 17.1 to 60.9 S cm⁻¹), good thermal stability (in the range from 25 to 150 °C) and resistivity against ageing (half-time of electrical conductivity around 80 days and better) were used in preparation of lightweight and flexible composites with silicone for electromagnetic interference shielding in the C-band region (5.85–8.2 GHz). The nanostructures’ morphology and chemical structure were characterized by scanning electron microscopy, Brunauer–Emmett–Teller specific surface measurement and attenuated total reflection Fourier-transform infrared spectroscopy. DC electrical conductivity was measured using the Van der Pauw method. Complex permittivity and AC electrical conductivity of respective silicone composites were calculated from the measured scattering parameters. The relationships between structure, electrical properties and shielding efficiency were studied. It was found that 2 mm-thick silicone composites of polypyrrole nanotubes and nanobelts shield almost 80% of incident radiation in the C-band at very low loading of conductive filler in the silicone (5% w/w). Resulting lightweight and flexible polypyrrole composites exhibit promising properties for shielding of electromagnetic interference in sensitive biological and electronic systems.     

Flame‐retardant effect of polyaniline coating deposited on cellulose fibers

Filtration paper was coated with a thin polyaniline film. The content of conducting polymer was 8.2 and 6.3 wt % for polyaniline hydrochloride and polyaniline base, respectively. After burning, the coated material retains the original fibrilar morphology of cellulose. The polyaniline coating converts to solid carbonaceous products. The resulting structure prevents the formation of gaseous carbon oxides by restricting the access of oxygen to cellulose. While the ash from the uncoated paper after burning is 0.005 wt %, the microtubular residue of polyaniline‐coated paper is 16–24 wt % of the original mass. The flame‐retardant performance of polyaniline and poly(1,4‐phenylenediamine) coatings was comparable both for the protonated forms and the corresponding bases. The conversion of polyaniline‐coated cellulose fibers to solid pyrolytic products was characterized by FTIR and Raman spectroscopies. © 2005 Wiley Periodicals, Inc. J Appl Polym Sci 98: 2347–2354, 2005     

The carbonization of thin polyaniline films

Polyaniline films on silicon and ceramic supports were prepared in situ during the oxidative polymerization of aniline. The films were heated up to 500 °C in an inert nitrogen atmosphere. The changes in molecular structure during the carbonization have been studied by infrared spectroscopy and Raman scattering using 514, 633 and 785 nm laser excitation lines. The transformation from polyaniline salt to the base form has been detected above 100 °C. The conversion to nitrogen-containing carbon-like material followed above 200 °C. The molecular structure of the films produced during heating to 500 °C contains crosslinked phenazine-like and oxidized quinonoid units. The aniline oligomers deposited on the support in the early stages of aniline oxidation are stable during heating as it has been observed by resonance Raman scattering using 785 nm laser excitation line. The water contact angles changed after carbonization, and the films became more hydrophilic as carbonization progressed.     

Magnetic Properties of ZnFe<Subscript>2</Subscript>O<Subscript>4</Subscript> Nanoparticles Synthesized by Starch-Assisted Sol–Gel Auto-combustion Method

In this paper, ZnFe₂O₄ spinel ferrite nanoparticles with different grain sizes at different annealing temperatures have been synthesized using the starch-assisted sol–gel auto-combustion method. The synthesized nanoparticles were characterized by conventional powder X-ray diffraction, Raman spectroscopy, Fourier transform infrared spectroscopy, field emission scanning electron microscopy, and vibrating sample magnetometer. The X-ray diffraction (XRD) patterns demonstrated that the ZnFe₂O₄ nanoparticles consist of single-phase spinel structure with crystallite sizes 4.81, 8.72, 12.06, 29.32, and 72.60 nm annealed at 400, 600, 800, 1000, and 1200 °C, respectively. Field emission scanning electron microscopy reveals that particles are of spherical morphology at lower annealing temperature and hexagonal-like morphology at higher temperature. An infrared spectroscopy study shows the presence of two principal absorption bands in the frequency range around 525 cm^?1 (ν ₁) and around 350 cm^?1 (ν ₂), which indicate the presence of tetrahedral and octahedral group complexes, respectively, within the spinel ferrite nanoparticles. Raman spectroscopy study also indicated the change in octahedral and tetrahedral site-related Raman modes in zinc ferrite nanoparticles with change of particle size. The nanocrystalline ZnFe₂O₄ samples (4.81, 8.72, 12.06, 29.32 nm) show ferrimagnetic behavior, and bulk sample (72.60 nm) shows paramagnetic behavior. This change in magnetic behavior is due to change of cation distribution in ZnFe₂O₄ nanoparticles with decrease of particle size.     

On the paper of Pascal Schweitzer concerning similarities between incompressibility methods and the Lovász Local Lemma

Schweitzer [Inform. Process. Lett. 109 (2009) 229-232] described a connection between the incompressibility method and the Lovász Local Lemma. The idea was illustrated on the problem of lower bounding van der Waerden numbers. However, his result using incompressibility is worse than that obtained by Local Lemma by a multiplicative factor of 4/e. In this paper we improve his method to give exactly the same result as the Lovász Local Lemma.     

Epidemiology of end‐stage renal disease and hemodialysis treatment in Serbia at the turn of the millennium

The study presents the epidemiological features of patients treated with renal replacement therapy (RRT) in Serbia from 1997 to 2009 and compares the results of hemodialysis treatment in 1999 and 2009. Epidemiological data were obtained from the National Registry of RRT patients and data on hemodialysis treatment from special surveys conducted in 1999 and 2009. Within the period 1997–2009 the incidence of patients on RRT increased from 108 to 179 per million population (pmp), prevalence rose from 435 to 699 pmp, while mortality rate fell from 20.7% to 16.7%. The frequency of patients with glomerulonephritis decreased, while that of patients with diabetes and hypertensive nephropathy increased. In late 2009 there were 5208 patients receiving RRT in Serbia. Within the examined period new hemodialysis and reverse osmosis equipment were purchased, high‐flux dialyzers with synthetic membranes were increasingly used and the number of patients receiving hemodiafiltration increased to 17.6%. Kt/V greater than 1.2 was recorded in 16% of the patients in 1999 but 52% in 2009. Options for correction of anemia and mineral disorders have also improved. The percentage of patients with HbsAg (13.8% vs. 4.8%) as well as anti‐hepatitis C virus antibodies positive patients (23.2% vs. 12.7%) was significantly lower in 2009 than in 1999. Both the incidence and prevalence of RRT patients in Serbia are rising continuously, while the mortality rate is falling. More favorable conditions for dialysis treatment have brought about significant improvement in the results over the last 10 years.     

Novel silicon carbide/polypyrrole composites; preparation and physicochemical properties

Novel silicon carbide/polypyrrole (SiC/PPy) conducting composites were prepared using silicon carbide as inorganic substrate. The surface modification of SiC was performed in aqueous solution by oxidative polymerization of pyrrole using ferric chloride as oxidant. Elemental analysis was used to determine the mass loading of polypyrrole in the SiC/PPy composites. Scanning electron microscopy showed the surface modification of SiC by PPy. PPy in composites was confirmed by the presence of PPy bands in the infrared spectra of SiC/PPy containing various amounts of conducting polymer. The conductivity of SiC/PPy composites depends on PPy content on the surface. The composite containing 35 wt.% PPy showed conductivity about 2 S cm⁻¹, which is in the same range as the conductivity of pure polypyrrole powder prepared under the same conditions using the same oxidant. PPy in the composites was clearly detected by X-ray photoelectron spectroscopy (XPS) measurements by its N1s and Cl2p peaks. High resolution scans of the C1s regions distinguished between silicon carbide and polypyrrole carbons. The fraction of polypyrrole at the composite surface was estimated from the silicon and nitrogen levels. The combination of XPS and conductivity measurements suggests that the surface of the SiC/PPy composites is polypyrrole-rich for a conducting polymer mass loading of at least 12.6 wt.%.