Selecting informative genes from microarray data by using hybrid methods for cancer classification

Gene expression technology, namely microarrays, offers the ability to measure the expression levels of thousands of genes simultaneously in biological organisms. Microarray data are expected to be of significant help in the development of an efficient cancer diagnosis and classification platform. A major problem in these data is that the number of genes greatly exceeds the number of tissue samples. These data also have noisy genes. It has been shown in literature reviews that selecting a small subset of informative genes can lead to improved classification accuracy. Therefore, this paper aims to select a small subset of informative genes that are most relevant for cancer classification. To achieve this aim, an approach using two hybrid methods has been proposed. This approach is assessed and evaluated on two well-known microarray data sets, showing competitive results. This work was presented in part at the 13th International Symposium on Artificial Life and Robotics, Oita, Japan, January 31–February 2, 2008     

Architectural Design,Improvement, and Challenges of Distributed Software-Defined Wireless Sensor Networks

Wireless Personal Communications - Software-defined networking (SDN) is widely perceived to simplify network management and monitoring. The introduction of the SDN model into wireless sensor...     

An Improved Hybrid Indoor Positioning Algorithm via QPSO and MLP Signal Weighting

Accurate location or positioning of people and self-driven devices in large indoor environments has become an important necessity The application of increasingly automated self-operating moving transportation units, in large indoor spaces demands a precise knowledge of their positions. Technologies like WiFi and Bluetooth, despite their low-cost and availability, are sensitive to signal noise and fading effects. For these reasons, a hybrid approach, which uses two different signal sources, has proven to be more resilient and accurate for the positioning determination in indoor environments. Hence, this paper proposes an improved hybrid technique to implement a fingerprinting based indoor positioning, using Received Signal Strength information from available Wireless Local Area Network access points, together with the Wireless Sensor Networks technology. Six signals were recorded on a regular grid of anchor points, covering the research space. An optimization was performed by relative signal weighting, to minimize the average positioning error over the research space. The optimization process was conducted using a standard Quantum Particle Swarm Optimization, while the position error estimate for all given sets of weighted signals was performed using a Multilayer Perceptron (MLP) neural network. Compared to our previous research works, the MLP architecture was improved to three hidden layers and its learning parameters were finely tuned. These experimental results led to the 20% reduction of the positioning error when a suitable set of signal weights was calculated in the optimization process. Our final achieved value of 0.725 m of the location incertitude shows a sensible improvement compared to our previous results.     

Simulation model for natural gas transmission pipeline network system

This paper focuses on developing a simulation model for the analysis of transmission pipeline network system (TPNS) with detailed characteristics of compressor stations. Compressor station is the key element in the TPNS since it provides energy to keep the gas moving. The simulation model is used to create a system that simulates TPNS with different configurations to get pressure and flow parameters. The mathematical formulations for the TPNS simulation were derived from the principles of flow of fluid through pipe, mass balance and compressor characteristics. In order to determine the unknown pressure and flow parameters, a visual C++ code was developed based on Newton–Raphson solution technique. Using the parameters obtained, the model evaluates the energy consumption for various configurations in order to guide for the selection of optimal TPNS. Results from the evaluations of the model with the existing TPNS and comparison with the existing approaches showed that the developed simulation model enabled to determine the operational parameters with less than 10 iterations. Hence, the simulation model could assist in decisions regarding the design and operations of the TPNS.     

Estimation of the minimum machining performance in the abrasive waterjet machining using integrated ANN-SA

In this study, Artificial Neural Network (ANN) and Simulated Annealing (SA) techniques were integrated labeled as integrated ANN-SA to estimate optimal process parameters in abrasive waterjet (AWJ) machining operation. The considered process parameters include traverse speed, waterjet pressure, standoff distance, abrasive grit size and abrasive flow rate. The quality of the cutting of machined-material is assessed by looking to the roughness average value (R_a). The optimal values of the process parameters are targeted for giving a minimum value of R_a. It was evidence that integrated ANN-SA is capable of giving much lower value of R_a at the recommended optimal process parameters compared to the result of experimental and ANN single-based modeling. The number of iterations for the optimal solutions is also decreased compared to the result of SA single-based optimization.     

Dynamic hybrid automatic repeat request (DHARQ) for WiMAX – Mobile multihop relay using adaptive power control

Wireless multihop network is currently attracting much attention as a new wireless broadband access technology due to numerous benefits. This work proposes a power control scheme for WiMAX multihop relay system. In contrast to existing power control and optimization approaches, our proposed method uses an adaptive Channel Quality Measurement for a relay station to reduce interferences to other mobile station (MS) or relay station (RS) within the same cell and hence increase the number of hops per link and consequently maximize the spatial reuse. The proposed power control is applied to a new dynamic HARQ algorithm for adaptive channel quality enhancement. Simulation results have indicated that the proposed approach achieves superior BER/PER performance enhancement in comparison to previous related works.     

Leader-follower consensus control of Lipschitz nonlinear systems by output feedback

This paper deals with the leader-follower consensus problem of Lipschitz nonlinear systems under fixed directed communication networks. Both state and output feedback control are proposed based on state and output measurements of neighbouring agents, respectively. Laplacian matrix features are explored for the stability analysis, and the sufficient conditions are derived to solve the consensus problem. Finally, simulation results are included to demonstrate the effectiveness of the output-based consensus controller.     

A compact hybrid feature vector for an accurate secondary structure prediction

Amino acid propensity score is one of the earliest successful methods used in protein secondary structure prediction. However, the score performs poorly on small-sized datasets and low-identity protein sequences. Based on current in silico method, secondary structure can be predicted from local folds or local protein structure. In biology, the evolution of secondary structure produces local protein structure with different lengths. To precisely predict secondary structures, we propose a derivative feature vector, DPS that utilizes the optimal length of the local protein structure. DPS is the unification of amino acid propensity score and dihedral angle score. This new feature vector is further normalized to level the edges. Prediction is performed by support vector machines (SVM) over the DPS feature vectors with class labels generated by secondary structure assignment method (SSAM) and secondary structure prediction method (SSPM). All experiments are carried out on RS126 sequences. The results from this proposed method also highlight the overall accuracy of our method compared to other state-of-the-art methods. The performance of our method was acceptable specifically in dealing with low number and low identity sequences.     

The design and development of suspended handles for reducing hand-arm vibration in petrol driven grass trimmer

The portable petrol driven grass trimmer is identified as a type of machine whose operator can be subjected to large magnitude of hand-arm vibration. These vibrations can cause complex vascular, neurological and musculoskeletal disorder, collectively named as hand-arm vibration syndrome. The vibration total level on the handle of grass trimmer of 11.30 m/s² was measured, and it has reached the exposure limit value of 5.0 m/s² for daily vibration exposure A(8). New suspended handles were designed to reduce the vibration level. Three different prototype handles with rubber mounts were designed. Handles were made of different materials, and the distance of rubber mounts were varied. From the study, it was observed that not all the handles with rubber mounts were effective in reducing hand-arm vibration. The reduction of vibration depended on the handle material and distance installed between rubber mount and vibration transmissibility of handle-isolation system. Subjective ratings of perception of vibration were measured, and the results indicated that operators were not fully aware of the level of vibration. A prototype handle that is made of heavier material results in the lowest hand-arm vibration of 2.69 m/s². The new handle has significantly reduced the vibration total value by 76% compare with the existing commercial handle.

Relevance to industry

Large numbers of workers are employed to perform grass trimming job in many developing countries. This paper presents the effect of handle types (commercial and prototype) on the commonly used grass trimmer.     

Genetic Algorithm and Simulated Annealing to estimate optimal process parameters of the abrasive waterjet machining

In this study, two computational approaches, Genetic Algorithm and Simulated Annealing, are applied to search for a set of optimal process parameters value that leads to the minimum value of machining performance. The objectives of the applied techniques are: (1) to estimate the minimum value of the machining performance compared to the machining performance value of the experimental data and regression modeling, (2) to estimate the optimal process parameters values that has to be within the range of the minimum and maximum coded values for process parameters of experimental design that are used for experimental trial and (3) to evaluate the number of iteration generated by the computational approaches that lead to the minimum value of machining performance. Set of the machining process parameters and machining performance considered in this work deal with the real experimental data of the non-conventional machining operation, abrasive waterjet. The results of this study showed that both of the computational approaches managed to estimate the optimal process parameters, leading to the minimum value of machining performance when compared to the result of real experimental data.