A test-driven approach to code search and its application to the reuse of auxiliary functionality

Context

Software developers spend considerable effort implementing auxiliary functionality used by the main features of a system (e.g., compressing/decompressing files, encryption/decription of data, scaling/rotating images). With the increasing amount of open source code available on the Internet, time and effort can be saved by reusing these utilities through informal practices of code search and reuse. However, when this type of reuse is performed in an ad hoc manner, it can be tedious and error-prone: code results have to be manually inspected and integrated into the workspace.

Objective

In this paper we introduce and evaluate the use of test cases as an interface for automating code search and reuse. We call our approach Test-Driven Code Search (TDCS). Test cases serve two purposes: (1) they define the behavior of the desired functionality to be searched; and (2) they test the matching results for suitability in the local context. We also describe CodeGenie, an Eclipse plugin we have developed that performs TDCS using a code search engine called Sourcerer.

Method

Our evaluation consists of two studies: an applicability study with 34 different features that were searched using CodeGenie; and a performance study comparing CodeGenie, Google Code Search, and a manual approach.

Results

Both studies present evidence of the applicability and good performance of TDCS in the reuse of auxiliary functionality.

Conclusion

This paper presents an approach to source code search and its application to the reuse of auxiliary functionality. Our exploratory evaluation shows promising results, which motivates the use and further investigation of TDCS.     

Aerobic Training in Young Men Increases the Transfer of Cholesterol to High Density Lipoprotein In Vitro: Impact of High Density Lipoprotein Size

Exercise training not only improves the plasma lipid profile but also reduces risk of developing coronary heart disease. We investigate whether plasma lipids and high density lipoprotein (HDL) metabolism are affected by aerobic training and whether the high-density lipoprotein cholesterol (HDL-C) levels at baseline influence exercise-induced changes in HDL. Seventy-one male sedentary volunteers were evaluated and allocated in two subgroups, according to the HLD-C levels (< or >40 mg/dL). Participants underwent an 18-week aerobic training period. Blood was sampled before and after training for biochemical analysis. Plasma lipids, apolipoproteins, HDL diameter, and VO₂ peak were determined. Lipid transfers to HDL were determined in vitro by incubating plasma samples with a donor lipid artificial nanoemulsion. After the 18-week period of aerobic training, the VO₂ peak increased, while the mean body mass index (BMI) decreased. HDL-C concentration was higher after the training period, but low-density lipoprotein cholesterol (LDL-C) and non-HDL-C did not change. The transfer of esterified cholesterol and phospholipids was greater after exercise training, but the triacylglycerol and unesterified cholesterol transfers were unchanged. The HDL particle diameter increased after aerobic training in all participants. When the participants were separated in low-HDL and normal-HDL groups, the postaerobic exercise increment in HDL-C was higher in the low-HDL group, while the transfer of esterified cholesterol was lower. In conclusion, aerobic exercise training increases the lipid transfers to HDL, as measured by an in vitro method, which possibly contributes to the classical elevation of the HDL-C associated with training.     

Conformation in solution of side-chain liquid crystal polymers as a function of the mesogen-graft amount

The conformation of side-chain liquid crystal polymers with different mesogen-graft amounts has been studied by small-angle neutron scattering in dilute solutions of toluene-d8 and THF-d8. It is shown that the radius of gyration increases by about twofold when the mesogen-graft amount increases from 0 to 100%, which suggests that the persistence length of the backbone increases by about 4-fold. Comparison with the results reported in the literature on the melt state suggests that the persistence length is not an intrinsic property of side chain liquid crystal polymers, but depends on inter-chain interactions.     

On Iron Metabolism and Its Regulation

Iron is a critical metal for several vital biological processes. Most of the body’s iron is bound to hemoglobin in erythrocytes. Iron from senescent red blood cells is recycled by macrophages in the spleen, liver and bone marrow. Dietary iron is taken up by the divalent metal transporter 1 (DMT1) in enterocytes and transported to portal blood via ferroportin (FPN), where it is bound to transferrin and taken up by hepatocytes, macrophages and bone marrow cells via transferrin receptor 1 (TfR1). While most of the physiologically active iron is bound hemoglobin, the major storage of most iron occurs in the liver in a ferritin-bound fashion. In response to an increased iron load, hepatocytes secrete the peptide hormone hepcidin, which binds to and induces internalization and degradation of the iron transporter FPN, thus controlling the amount of iron released from the cells into the blood. This review summarizes the key mechanisms and players involved in cellular and systemic iron regulation.     

Recent Advances in Lipase-Mediated Preparation of Pharmaceuticals and Their Intermediates

Biocatalysis offers an alternative approach to conventional chemical processes for the production of single-isomer chiral drugs. Lipases are one of the most used enzymes in the synthesis of enantiomerically pure intermediates. The use of this type of enzyme is mainly due to the characteristics of their regio-, chemo- and enantioselectivity in the resolution process of racemates, without the use of cofactors. Moreover, this class of enzymes has generally excellent stability in the presence of organic solvents, facilitating the solubility of the organic substrate to be modified. Further improvements and new applications have been achieved in the syntheses of biologically active compounds catalyzed by lipases. This review critically reports and discusses examples from recent literature (2007 to mid-2015), concerning the synthesis of enantiomerically pure active pharmaceutical ingredients (APIs) and their intermediates in which the key step involves the action of a lipase.     

Mechanical,barrier, and interfacial properties of biodegradable composite films made of methylcellulose and poly(caprolactone)

Methylcellulose (MC) films were prepared by casting from its 1% aqueous solution containing 0.5% vegetable oil, 0.25% glycerol, and 0.025% Tween^®80. Poly(caprolactone) (PCL) films were prepared by compression molding from its granules. Biodegradable composite films were fabricated using MC film as reinforcing agent and PCL as the matrix material by compression molding. One layer of MC film was reinforced with two layers of PCL films. The MC content in the composites was varied from 10 to 50% by weight. Mechanical, barrier, and degradation properties of PCL, MC, and composite films were evaluated. The values of puncture strength (PS), puncture deformation (PD), viscoelasticity (Y) coefficient, and water vapor permeability (WVP) of the composites (50% MC content) were found to be 124.3 N/mm, 3.2 mm, 31%, and 2.6 g·mm/m²·day·kPa, respectively. Oxygen transmission rate (OTR) of PCL, MC, and composites (50% MC) were found to be 175, 25, 22 cc/m²/d, respectively, which indicated that composite films showed significantly lower OTR than PCL films. Degradation tests of the composite films (50% MC) were performed for 6 weeks in aqueous medium (at 25°C), and it was found that composites lost its mass slowly with time. After 6 weeks, mass and PS of the composites were decreased to 13.4 and 12%, respectively. Composite interface was studied by scanning electron microscopy (SEM). The MC film had good adhesion with PCL matrix during compression molding and suggested strong interface of the composite system. SEM image after 6 weeks of degradation showed some openings in the interface and revealed slow degradation of the MC films. © 2011 Wiley Periodicals, Inc. J Appl Polym Sci, 2012     

Introducing UniCorT: an iterative university course timetabling tool with MaxSAT

Journal of Scheduling - This paper describes the UniCorT tool designed to solve university course timetabling problems specifically tailored for the 2019 International Timetabling Competition (ITC...