The influence of epiphylls on remote sensing of humid forests

Epiphylls - lichens, fungi, liverworts, etc. infesting leaf surfaces - are found throughout humid forests of the world. It is well understood that epiphylls inhibit light interception by host plants, but their effect on remote sensing of colonized forests has not been examined. Incorporating leaf-level spectra from Terra Firme (primary forest) and Amazonian Caatinga (woodlands/forest growing on nutrient-deficient sandy soils), we used the GeoSAIL model to propagate leaf-level measurements to the canopy level and determine their effect on commonly used vegetation indices. In Caatinga, moderate infestations (50% leaf area epiphyll cover), lowered simulated Normalized Difference Vegetation Index (NDVI) and Enhanced Vegetation Index (EVI) values by 6.1% and 20.4%, respectively, largely due to near infrared dampening. Heavy infestation (100% cover) simulations exhibited decreases 1.5-2 times greater than those of moderate infestations. For Terra Firme, which are generally less affected by epiphylls, moderate (20% leaf area) and heavy infestations (40%) lowered EVI by 4.4% (S.D. 0.8%) and 8.1% (S.D. 1.5%), respectively. Near infrared and green reflectance were most affected at the canopy level, showing mean decreases of 10.6% (S.D. 2.25%) and 9.5% (S.D. 3.49%), respectively, in heavy Terra Firme infestations. Time series of Moderate Resolution Imaging Spectrometer (MODIS) data corroborated the modeling results, suggesting a degree of coupling between epiphyll cover and the EVI and NDVI. These results suggest that, without explicit consideration of the presence of epiphylls, remote sensing-based methodologies may underestimate leaf area index, biomass and productivity in humid forests.     

Estimating Siberian timber volume using MODIS and ICESat/GLAS

Geosciences Laser Altimeter System (GLAS) space LiDAR data are used to attribute a MODerate resolution Imaging Spectrometer (MODIS) 500 m land cover classification of a 10° latitude by 12° longitude study area in south-central Siberia. Timber volume estimates are generated for 16 forest classes, i.e., four forest cover types × four canopy density classes, across this 811,414 km² area and compared with a ground-based regional volume estimate. Two regional GLAS/MODIS timber volume products, one considering only those pulses falling on slopes ≤ 10° and one utilizing all GLAS pulses regardless of slope, are generated. Using a two-phase(GLAS-ground plot) sampling design, GLAS/MODIS volumes average 163.4 ± 11.8 m³/ha across all 16 forest classes based on GLAS pulses on slopes ≤ 10° and 171.9 ± 12.4 m³/ha considering GLAS shots on all slopes. The increase in regional GLAS volume per-hectare estimates as a function of increasing slope most likely illustrate the effects of vertical waveform expansion due to the convolution of topography with the forest canopy response. A comparable, independent, ground-based estimate is 146 m³/ha [Shepashenko, D., Shvidenko, A., and Nilsson, S. (1998). Phytomass (live biomass) and carbon of Siberian forests. Biomass and Bioenergy, 14, 21-31], a difference of 11.9% and 17.7% for GLAS shots on slopes ≤ 10° and all GLAS shots regardless of slope, respectively. A ground-based estimate of total volume for the entire study area, 7.46 × 10⁹ m³, is derived using Shepashenko et al.'s per-hectare volume estimate in conjunction with forest area derived from a 1990 forest map [Grasia, M.G. (ed.). (1990). Forest Map of USSR. Soyuzgiproleskhoz, Moscow, RU. Scale: 1:2,500,000]. The comparable GLAS/MODIS estimate is 7.38 × 10⁹ m³, a difference of less than 1.1%. Results indicate that GLAS data can be used to attribute digital land cover maps to estimate forest resources over subcontinental areas encompassing hundreds of thousands of square kilometers.     

Fitness functions in evolutionary robotics: A survey and analysis

This paper surveys fitness functions used in the field of evolutionary robotics (ER). Evolutionary robotics is a field of research that applies artificial evolution to generate control systems for autonomous robots. During evolution, robots attempt to perform a given task in a given environment. The controllers in the better performing robots are selected, altered and propagated to perform the task again in an iterative process that mimics some aspects of natural evolution. A key component of this process–one might argue, the key component–is the measurement of fitness in the evolving controllers. ER is one of a host of machine learning methods that rely on interaction with, and feedback from, a complex dynamic environment to drive synthesis of controllers for autonomous agents. These methods have the potential to lead to the development of robots that can adapt to uncharacterized environments and which may be able to perform tasks that human designers do not completely understand. In order to achieve this, issues regarding fitness evaluation must be addressed. In this paper we survey current ER research and focus on work that involved real robots. The surveyed research is organized according to the degree of a priori knowledge used to formulate the various fitness functions employed during evolution. The underlying motivation for this is to identify methods that allow the development of the greatest degree of novel control, while requiring the minimum amount of a priori task knowledge from the designer.     

The effects of multifocal refractive lenses on occipital extension and forward head posture during a visual task

The purpose of this study was to determine if a change in forward head posture and occipital extension occurred in participants who wore multifocal lenses vs. those persons with non-multifocal lenses while performing an 8-min visual reading task on a visual display unit (VDU). Forty-two healthy human participants were recruited for this study. Thirty-three participants completed the study. Fourteen participants wore multifocal lenses and 19 wore frames with non-multifocal lenses. To evaluate the degree of change of forward head posture and occipital extension digital photographs of cervical posture were taken at four different time intervals: prior to performing the reading task and at 3, 5 and 8 min during the reading task. The digital photographs were analysed utilizing a computer program. Two one-way ANOVA were utilized to determine the degree of change of forward head posture and occipital extension between groups. A significant difference was identified between groups for changes in degrees of forward head posture while performing a visual reading task on a VDU. However, no significant difference between groups was found for occipital extension while performing the same task. Multifocal wearers exhibit greater degrees of change in forward head posture and occipital extension than non-multifocal wearers. These postural changes may place them at a greater risk for musculoskeletal disorders and headaches.     

Symbolic computation with finite biquandles

A method of computing a basis for the second Yang–Baxter cohomology of a finite biquandle with coefficients in Q$\mathbb{Q}$ and _Zp${\mathbb{Z}}_p$ from a matrix presentation of the finite biquandle is described. We also describe a method for computing the Yang–Baxter cocycle invariants of an oriented knot or link represented as a signed Gauss code. We provide a URL for our Maple implementations of these algorithms.     

Short-term synaptic plasticity can enhance weak signal detectability in nonrenewal spike trains

We study the encoding of weak signals in spike trains with interspike interval (ISI) correlations and the signals' subsequent detection in sensory neurons. Motivated by the observation of negative ISI correlations in auditory and electrosensory afferents, we assess the theoretical performance limits of an individual detector neuron receiving a weak signal distributed across multiple afferent inputs. We assess the functional role of ISI correlations in the detection process using statistical detection theory and derive two sequential likelihood ratio detector models: one for afferents with renewal statistics; the other for afferents with negatively correlated ISIs. We suggest a mechanism that might enable sensory neurons to implicitly compute conditional probabilities of presynaptic spikes by means of short-term synaptic plasticity. We demonstrate how this mechanism can enhance a postsynaptic neuron's sensitivity to weak signals by exploiting the correlation structure of the input spike trains. Our model not only captures fundamental aspects of early electrosensory signal processing in weakly electric fish, but may also bear relevance to the mammalian auditory system and other sensory modalities.     

Temporal alignment of tissue and arterial data and selection of integration start times for the H(2)(15)O autoradiographic CBF model in PET

A technique has been developed and tested that provides an automated method of temporally aligning the PET tissue activity curve with the arterial activity curve for quantification of cerebral blood flow using the H(2)(15)O autoradiographic model. This technique not only determines the relative time delay between the two curves, but also provides the start time of integration. Variability in computing global cerebral blood flow using this technique is shown to be less than that obtained by trained observers manually selecting parameters and at least as good as that obtained by using another automated alignment technique.     

Identification of two distinct properties of class II major histocompatibility complex-associated peptides

We have examined the interactions of various peptides with the mouse class II major histocompatibility complex molecule I-Ak. The peptides were derived from the model protein hen egg white lysozyme (HEL). The immunodominant peptide of HEL is a 10-mer, residues 52-61. Our previous work established that this sequence contains the key residues for binding and presentation to T cells. Now we show that the binding of this 10-mer sequence resulted in complexes of I-Ak and peptide that, in SDS/PAGE (without boiling the protein), rapidly dissociated from the component alpha and beta chains. The binding interactions were studied in vitro, by incubating purified I-Ak and radiolabeled peptide, or ex vivo, by using antigen-presenting cells incubated with peptides. Peptides with additional residues at either the amino or carboxyl terminus behaved dramatically differently. Complexes of I-Ak with the longer peptides were stable to SDS/PAGE. Very few amino acid additions result in the change from unstable to stable complexes. The important issue here is that when cultured with HEL, antigen-presenting cells selected the HEL peptides containing the 52-61 sequences that favored stability [Nelson, C. A., Roof, R. W., McCourt, D. W. & Unanue, E. R. (1992) Proc. Natl., Acad. Sci. USA 89, 7380-7383]. Also, from other studies, such sequences correlate with a high immunogenicity of the peptide. We conclude that there are structural features of peptides that change the stability of the class II molecule and that are independent of the "core" peptide seen by the T cells.