Characterization of the Calicheamicin Orsellinate C2‐O‐Methyltransferase CalO6

Although bacterial iterative type I polyketide synthases are now known to participate in the biosynthesis of a small set of diverse natural products, the subsequent downstream modification of the resulting polyketide products is poorly understood. We report the functional characterization of the putative orsellinic acid C2‐O‐methyltransferase, which is involved in calicheamicin biosynthesis. This study suggests that C2‐O‐methylation precedes C3‐hydroxylation/methylation and C5‐iodination and requires a coenzyme A‐ or acyl carrier protein‐bound substrate.     

Immune and Anticancer Responses Elicited by Fully Synthetic Aberrantly Glycosylated MUC1 Tripartite Vaccines Modified by a TLR2 or TLR9 Agonist

The mucin MUC1 is overexpressed and aberrantly glycosylated by many epithelial cancer cells manifested by truncated O‐linked saccharides. Although tumor‐associated MUC1 has generated considerable attention because of its potential for the development of a therapeutic cancer vaccine, it has been difficult to design constructs that consistently induce cytotoxic T‐lymphocytes (CTLs) and ADCC‐mediating antibodies specific for the tumor form of MUC1. We have designed, chemically synthesized, and immunologically examined vaccine candidates each composed of a glycopeptide derived from MUC1, a promiscuous T_helper peptide, and a TLR2 (Pam₃CysSK₄) or TLR9 (CpG‐ODN 1826) agonist. It was found that the Pam₃CysSK₄‐containing compound elicits more potent antigenic and cellular immune responses, resulting in a therapeutic effect in a mouse model of mammary cancer. It is thus shown, for the first time, that the nature of an inbuilt adjuvant of a tripartite vaccine can significantly impact the quality of immune responses elicited against a tumor‐associated glycopeptide. The unique adjuvant properties of Pam₃CysSK₄, which can reduce the suppressive function of regulatory T cells and enhance the cytotoxicity of tumor‐specific CTLs, are likely responsible for the superior properties of the vaccine candidate 1 .     

Multiwall carbon-nanotube-doped ion conducting polymer electrolyte for electrochemical application

Electrical, structural and optical properties of a composite containing a polymer electrolyte (namely polyethylene oxide complexed with sodium iodide) and multiwall carbon nanotube (MWCNT) are reported. The films of these composites were ‘solution casted’ using the viscous solution of polyethylene oxide (PEO) complexed with sodium iodide (NaI) in desired ratios and characterised using various techniques. The conductivity versus composition plot in PEO:NaI shows conductivity maxima at 12?wt% NaI concentration while in MWCNTs doped polymer electrolyte it occurs at 40?wt% MWCNTs concentration. The surface morphology by scanning electron microscopy (SEM) shows the enhancement in amorphous reason by MWCNTs doping which is a well-known favourable condition for conductivity enhancement. The differential scanning calorimetry shows that dispersal of MWCNTs reduces the crystallinity of polymer electrolyte that is well-supported by our polarised optical micrographs and SEM measurements.     

User perception study for performance evaluation of domestic defluoridation techniques for its application in rural areas

Fluoride concentrations in ground water have been monitored in rural areas of Dhar and Jhabua districts in Madhya Pradesh, India. A correlation of fluoride concentration with pH, TDS and conductivity has been estimated to identify surrogate monitoring parameter. Further, fluoride removal from drinking water has been achieved by using adsorbents specially developed for domestic applications. These adsorbents have been evaluated using three different methods namely; loose adsorbent, pre-packed sachet and packed bamboo column. Comparative evaluation of these methods has been demonstrated in the laboratory and field. The stringent limit of 1mg/L for fluoride concentration in drinking water has been achieved by use of specially designed adsorbents. A feedback from end-users in Tarapur and Ukala villages of Dhar districts Madhya Pradesh regarding the adsorbents and its acceptability has been collected. User's perception regarding these household treatments reveals encouraging response for defluoridation methods. According to user's perception loose adsorbent approach emerged out as most simple, clean and safe household defluoridation method.     

Image analysis of microstructural changes in almond cotyledon as a result of processing

Release of oil from nuts due to damaged cellular structures can degrade the quality of products incorporating nuts. The aim of this study was to investigate the effects of different processing conditions on microstructure of almond tissue and to quantify these changes using image processing. Spinning disk confocal fluorescence microscopy was used for imaging changes in microstructure of almonds as a function of different thermal processing of almonds. Multiple staining of Nile Red and Calcofluor White was applied to differentiate cell wall structures and oil bodies within individual almond cells without chemical fixation. An algorithm for image processing, included image preprocessing, segmentation, and determination of morphological features of segmented objects, was developed. Oil-roasting processes (140 °C and 150 °C) were found to have a significant impact on microstructure of almonds when compared to the hot air-roasting and blanching processes. Oil-roasted almond at 150 °C had a greater cellular damage due to cell wall and membrane rupture. These changes in microstructure of almonds would make them slightly more susceptible to release oil during storage. The image analysis presented allows quantitative evaluation for the effect of different processing on almond microstructure.     

Solar-based photoreduction of methyl orange using zeolite supported photocatalytic materials

A new class of novel photocatalysts has been prepared by supporting TiO₂ on the zeolite matrix by various routes of synthesis. Different transition metals like cobalt, nickel, and ruthenium have been incorporated in these photocatalysts, alongwith molybdenum based heteropolyacid (HPA) to improve the photocatalytic activity of these materials. Photoreduction of methyl orange under solar radiation was compared with photoreduction in presence of artificial visible light illumination to evaluate their photocatalytic activity. The quantity of methyl orange photoreduced by the cobalt containing photocatalyst was about 2.40 mg/g of TiO₂ under the influence of sunlight as compared to 4.111 mg/g of TiO₂ under artificial visible light illumination. However, the efficiency of the photocatalyst is high as compared to P25 TiO₂ under solar light (0.508 mg/g of TiO₂). The high photocatalytic activity of these materials is due to the synergistic effect of incorporation of transition metals in combination with TiO₂ and HPA supported by the zeolite matrix. These materials are being evaluated for photocatalytic water splitting.     

On the use of NSGA-II for multi-objective resource allocation in MIMO-OFDMA systems

This paper investigates the problem of dynamic subcarrier and bit allocation in downlink of Multiple Input Multiple Output (MIMO) Orthogonal Frequency Division Multiple Access (OFDMA) Systems. Using Singular Value Decomposition, the MIMO fading channel of each subcarrier is transformed into an equivalent bank of parallel Single Input Single Output sub-channels. To achieve the capacity bound, one must solve a multiuser subcarrier allocation and the optimal bit allocation jointly. To alleviate the computational complexity of joint subcarrier and bit allocation, several suboptimal solutions have been proposed. These suboptimal solutions handle subcarrier and bits individually. We propose the use of Non-dominated Sorting Genetic Algorithm (NSGA)-II, which is a multi-objective Genetic Algorithm, for joint allocation of bits and subcarriers, in the downlink of MIMO-OFDMA system. NSGA-II is intended for optimization problems involving multiple conflicting objectives. Here the two conflicting objectives are Rate Maximization and Transmit Power Minimization. The simulation results indicate remarkable improvement in terms of convergence over previous approaches involving Evolutionary algorithms. At the same time capacity achieved by the proposed algorithm is found to be comparable with that of previous algorithms.     

metaXCMS: second-order analysis of untargeted metabolomics data

Mass spectrometry-based untargeted metabolomics often results in the observation of hundreds to thousands of features that are differentially regulated between sample classes. A major challenge in interpreting the data is distinguishing metabolites that are causally associated with the phenotype of interest from those that are unrelated but altered in downstream pathways as an effect. To facilitate this distinction, here we describe new software called metaXCMS for performing second-order ("meta") analysis of untargeted metabolomics data from multiple sample groups representing different models of the same phenotype. While the original version of XCMS was designed for the direct comparison of two sample groups, metaXCMS enables meta-analysis of an unlimited number of sample classes to facilitate prioritization of the data and increase the probability of identifying metabolites causally related to the phenotype of interest. metaXCMS is used to import XCMS results that are subsequently filtered, realigned, and ultimately compared to identify shared metabolites that are up- or down-regulated across all sample groups. We demonstrate the software's utility by identifying histamine as a metabolite that is commonly altered in three different models of pain. metaXCMS is freely available at http://metlin.scripps.edu/metaxcms/.     

Bee colony optimization aided adaptive resource allocation in OFDMA systems with proportional rate constraints

Orthogonal frequency division multiple access (OFDMA) is a promising technique, which can provide high downlink capacity for the emerging wireless systems. The total capacity of OFDMA can be maximized by adaptively assigning subcarriers to the users with the best gains for those subcarriers, with power subsequently distributed by water-filling. In this paper, we propose the use of artificial bee colony (ABC) algorithm combined with Deb’s selection mechanism to handle the constraints. In this scheme, a probabilistic selection scheme assigns probability values to feasible solutions based on their fitness values and to infeasible individuals based on their violations, to allocate the resources to the users in downlink OFDMA system. Specifically we propose two approaches for resource allocation in downlink OFDMA systems using ABC algorithm. In the first approach, ABC algorithm is used for subcarrier allocation only, while in second approach the ABC algorithm is used for joint subcarrier and power allocation. It is shown that both these approaches obtain higher sum capacities as compared to that obtained by previous works, with comparable computational complexity. It is also shown that the joint subcarrier and power allocation approach provides near optimal results at the cost of slightly higher computational cost.     

Contact Fatigue of a Silicon Carbide with a Heterogeneous Grain Structure

A comparative study of cyclic fatigue damage from Hertzian contacts in silicon carbide ceramics with homogeneous microstructure (fine, equiaxed grains, strong grain boundaries) and heterogeneous microstructure (coarse, contiguous elongate grains, weak interphase boundaries) is presented. Observations of the surface and subsurface damage patterns using optical microscopy reveal fundamentally different cyclic fatigue mechanisns: in the homogeneous material, by slow growth of a well-developed cone crack outside the contact area; in the heterogeneous material, by progressive mechanical degradation within a distributed damage zone below the contact area. Scanning electron micrographs of the latter material show copious fine debris in the damage zone, consistent with a degradation mechanism by frictional attrition by forward-reverse sliding at the weak interphase boundaries. Acoustic emission is recorded during both load and unload half-cycles, confirming hysteresis in the sliding process. Flexure tests indicate initially slight strength losses from the cyclic contact damage in both microstructures, followed by accelerated losses at higher numbers of cycles. The underlying basis for establishing an analytical model of damage accumulation in the heterogeneous microstructure in terms of shear-fault sliding, and for designing micro-structures for optimal properties in fatigue and wear applications, is foreshadowed.