The Role of Natural Polymorphic Variants of DNA Polymerase β in DNA Repair

DNA polymerase β (Polβ) is considered the main repair DNA polymerase involved in the base excision repair (BER) pathway, which plays an important part in the repair of damaged DNA bases usually resulting from alkylation or oxidation. In general, BER involves consecutive actions of DNA glycosylases, AP endonucleases, DNA polymerases, and DNA ligases. It is known that protein–protein interactions of Polβ with enzymes from the BER pathway increase the efficiency of damaged base repair in DNA. However natural single-nucleotide polymorphisms can lead to a substitution of functionally significant amino acid residues and therefore affect the catalytic activity of the enzyme and the accuracy of Polβ action. Up-to-date databases contain information about more than 8000 SNPs in the gene of Polβ. This review summarizes data on the in silico prediction of the effects of Polβ SNPs on DNA repair efficacy; available data on cancers associated with SNPs of Polβ; and experimentally tested variants of Polβ. Analysis of the literature indicates that amino acid substitutions could be important for the maintenance of the native structure of Polβ and contacts with DNA; others affect the catalytic activity of the enzyme or play a part in the precise and correct attachment of the required nucleotide triphosphate. Moreover, the amino acid substitutions in Polβ can disturb interactions with enzymes involved in BER, while the enzymatic activity of the polymorphic variant may not differ significantly from that of the wild-type enzyme. Therefore, investigation regarding the effect of Polβ natural variants occurring in the human population on enzymatic activity and protein–protein interactions is an urgent scientific task.     

Thermal properties of Sn-based solder alloys

During last few decades, emerging environmental regulations worldwide, more notably in Europe and Japan, have targeted the elimination of Pb usage in electronic assemblies due to the inherent toxicity of this element. This situation drives to the replacement of the Sn–Pb solder alloy of eutectic composition commonly used as joining material to suitable lead-free solders for microelectronic assembly. Sn-based alloys containing Ag, Cu, Bi, and Zn are potential lead-free solders, usually close to the binary or ternary eutectic composition. For this reason a great effort was directed to establish reliable thermophysical data fundamental to interpret the solidification process and fluidity of alloys belonging to these systems. In this work, an analysis of the solidification process of pure Sn, binary Sn–Ag, Sn–Cu, Sn–Bi, Sn–Zn, Sn–Pb and ternary Sn–Ag–Cu eutectic alloys was carried out using computer aided-cooling curve analysis and differential scanning calorimetry.     

An analysis of students’ spontaneous computer-mediated help seeking: A step toward the design of ecologically valid supporting tools

This study analyzes middle school students’ spontaneous mathematics-related help-seeking behavior, in view of making ecologically valid recommendations for the design of supporting tools or “help systems”. Our aim was to investigate the content of students’ help-seeking messages – Are there different forms of help-seeking messages and do they evolve with age? We used the archives of a French forum that provides students with free individualized help in mathematics. The data consisted of 206 messages sent by French middle school students over a period of 42 months. The constituent categories of the messages were identified. The results showed that not all middle school students use the same help-seeking “format”. Compared to sixth graders, ninth graders wrote messages containing more constituent categories, i.e., they provided the online expert with more kinds of information. A detailed analysis of the categories further showed that older students’ messages more often contained explicit help requests and contextual information than did younger students’ messages. Thus, the messages of the oldest students (age 15) were both cognitively more understandable and socially more acceptable than those of the youngest students (age 11). The interpretation of these findings and their implications for designing help systems are discussed.     

Electroporation-Induced Cell Modifications Detected with THz Time-Domain Spectroscopy

Electroporation (electropermeabilization) increases the electrical conductivity of biological cell membranes and lowers transport barriers for normally impermeant materials. Molecular simulations suggest that electroporation begins with the reorganization of water and lipid head group dipoles in the phospholipid bilayer interface, driven by an externally applied electric field, and the evolution of the resulting defects into water-filled, lipid pores. The interior of the electroporated membrane thus contains water, which should provide a signature for detection of the electropermeabilized state. In this feasibility study, we use THz time-domain spectroscopy, a powerful tool for investigating biomolecular systems and their interactions with water, to detect electroporation in human cells subjected to permeabilizing pulsed electric fields (PEFs). The time-domain response of electroporated human monocytes was acquired with a commercial THz, time-domain spectrometer. For each sample, frequency spectra were calculated, and the absorption coefficient and refractive index were extracted in the frequency range between 0.2 and 1.5 THz. This analysis reveals a higher absorption of THz radiation by PEF-exposed cells, with respect to sham-exposed ones, consistent with the intrusion of water into the cell through the permeabilized membrane that is presumed to be associated with electroporation.     

S-map and tracial states

The notion of s-map introduced in quantum logics to define conditional expectations for non-compatible events is studied in projection lattices of von Neumann algebras. It is shown that every tracial state gives rise to an s-map, and conversely, every s-map defines a tracial state.     

Pattern formation in models of fixed-bed reactors

This work reviews and compares spatiotemporal patterns in three models of adiabatic fixed catalytic beds for reactions with oscillatory kinetics: homogeneous and heterogeneous models, which are studied using generic first-order kinetics, and a detailed model of CO oxidation in the monolithic reactor. These three models describe reactors with one, two or all three phases (fluid-, solid- and adsorbed-phases), respectively. Pattern selection is based on the oscillatory or bistable nature of the kinetics and on the nature of fronts. The heterogenous and detailed models may exhibit local bistability while the homogeneous model does not admit this property: a simple conversion between the parameters of the homogeneous and heterogeneous models is suggested.

The spatiotemporal patterns in the reactor can be predicted from the sequence of phase planes spanned by the reactor. Stationary or oscillatory front solutions, oscillatory states that sweep the whole surface or excitation fronts may be realized in the homogeneous and heterogeneous models. The detailed model of the converter may exhibit oscillatory motion, which may be periodic or chaotic, in which typically a hot domain enters the reactor exit and moves quickly upstream; the following extinction occurs almost simultaneously due to strong coupling by convection.     

Study of Evaporative Convection in an Open Cavity under Shear Stress Flow

When a layer of volatile liquid is exposed to a shear flow of inert gas, thermal patterns, in the form of interfacial ripples and bulk plumes, are created by the combined action of evaporative, shear-driven and surface-tension-driven instabilities. The topology of the interfacial thermal patterns is mainly influenced by the geometry of the evaporating surface, the thickness of the evaporating layer, the intensity of the shear flow and by the physic-chemical properties of the working fluid. In this paper, by means of numerical simulations, we focused our attention on the dynamics of the interfacial thermal patterns for different working fluids and thicknesses of the volatile liquid layer. This study has been performed in the frame of the ESA sponsored Space Program on heat and mass transfer CIMEX-1. The choice of the fluids—ethyl alcohol and FC72 (n-perfluorohexane)—the reference values for the inert gas flow rate, the thickness of the liquid layer as well as the geometrical features of the computational domain correspond exactly to the ones foreseen for the CIMEX-1 experiment. However, the main conclusions can be considered of more general validity.     

A stochastic method for stand-alone photovoltaic system sizing

Photovoltaic systems utilize solar energy to generate electrical energy to meet load demands. Optimal sizing of these systems includes the characterization of solar radiation. Solar radiation at the Earth’s surface has random characteristics and has been the focus of various academic studies. The objective of this study was to stochastically analyze parameters involved in the sizing of photovoltaic generators and develop a methodology for sizing of stand-alone photovoltaic systems. Energy storage for isolated systems and solar radiation were analyzed stochastically due to their random behavior. For the development of the methodology proposed stochastic analysis were studied including the Markov chain and beta probability density function. The obtained results were compared with those for sizing of stand-alone using from the Sandia method (deterministic), in which the stochastic model presented more reliable values. Both models present advantages and disadvantages, however, the stochastic one is more complex and provides more reliable and realistic results.