HER2‐ and EGFR‐Specific Affiprobes: Novel Recombinant Optical Probes for Cell Imaging

The human epidermal growth factor receptors, EGFR and HER2, are members of the EGFR family of cell‐surface receptors/tyrosine kinases. EGFR‐ and HER2‐positive cancers represent a more aggressive disease with greater likelihood of recurrence, poorer prognosis, and decreased survival rate, compared to EGFR‐ or HER2‐negative cancers. The details of HER2 proto‐oncogenic functions are not deeply understood, partially because of a restricted availability of tools for EGFR and HER2 detection (A. Sorkin and L. K. Goh, Exp. Cell Res. 2009 , 315, 683–696). We have created photostable and relatively simple‐to‐produce imaging probes for in vitro staining of EGFR and HER2. These new reagents, called affiprobes, consist of a targeting moiety, a HER2‐ or EGFR‐specific Affibody® molecule, and a fluorescent moiety, mCherry (red) or EGFP (green). Our flow cytometry and confocal microscopy experiments demonstrated high specificity and signal/background ratio of affiprobes. Affiprobes are able to stain both live cells and frozen tumor xenograph sections. This type of optical probe can easily be extended for targeting other cell‐surface antigens/ receptors.     

The role of organic modification of layered nanosilicates on mechanical and surface properties of organic–inorganic coatings

The effect of alcohol- and amino-functional compatibilizers in nanocomposites of organic–inorganic (O–I) matrices with layered nanofillers (LN) was studied. The alcohol-functional compatibilizers are shown to have a marked influence on morphology, surface- and mechanical properties of the coatings prepared, in spite of the very small amount of both filler and compatibilizer (together 0.5 wt%). The studied O–I matrices were polyepoxy-functional polysiloxanes cured with organic diamines. Two commercial clays were used as LN in the concentration of 0.5 wt%: natural montmorillonite (Cloisite Na, abbreviated MNa) and Bentonite for water systems (BW). These clays were compatibilized by three hydroxyl-containing substances: Polyethylene glycol 4000, TWEEN 80, and tris(hydroxymethyl)aminomethane (TRIS). All compatibilizers improve the dispersion of the clay fillers, while TRIS always supports full exfoliation. They also cause an increase in the microroughness of the coatings and strongly modify their large-scale surface patterns. Mechanical properties are also strongly affected by the compatibilizers: toughness is increased, sometimes markedly, as well as stress at break. Tensile and shear moduli are reduced by the compatibilizers, while the glass transition temperature is specifically shifted to higher or lower values, sometimes markedly.     

A simple algorithm for measuring particle size distributions on an uneven background from TEM images

Nanoparticles have a wide range of applications in science and technology. Their sizes are often measured using transmission electron microscopy (TEM) or X-ray diffraction. Here, we describe a simple computer algorithm for measuring particle size distributions from TEM images in the presence of an uneven background. The approach is based on adaptive thresholding, making use of local threshold values that change with spatial coordinate. The algorithm allows particles to be detected and characterized with greater accuracy than using more conventional methods, in which a global threshold is used. Its application to images of heterogeneous catalysts is presented.     

Isomerization of α-pinene over dealuminated ferrierite-type zeolites

Isomerization of α-pinene was performed on a series of dealuminated ferrierite (FER)-type zeolites in liquid phase at 363 K using a batch reactor. The course of zeolite dealumination was followed in detail using ²⁹Si, ²⁷Al, ¹H MAS NMR, XRD, FTIR, and sorption of nitrogen. The ammonium form of FER was dealuminated with aqueous solutions of HCl. While retaining the crystallinity of the zeolite particles, the treatments removed up to 53% of the tetrahedrally coordinated aluminum atoms from the FER framework. According to ²⁹Si MAS NMR studies, the framework aluminum atoms located at the 10-membered rings in the main channels of FER (T_B sites) were depleted preferentially from their positions. Even relatively mild dealumination of FER led to an active catalyst containing both Brønsted and Lewis centers, yielding up to 97% conversion of α-pinene at 363 K, in contrast to the 72% observed for the parent hydrogen form. Such catalytic behavior was discussed in terms of the conversion of a reactant inside micropores of the zeolite catalyst, on Brønsted acid centers with enhanced strength located probably in the vicinity of Lewis sites. The selectivity toward camphene and limonene changed smoothly with the dealumination level; thus, a higher selectivity toward limonene was observed at the expense of camphene formation with increasing the n_Si/n_Al ratio of the catalysts. The selectivity toward camphene and limonene was close to 85% for all of the materials studied. The initial rates of α-pinene transformations over FER-type materials exceeded those observed for other catalytic systems, heteropoly acid/SiO₂ and H₂SO₄/ZrO₂. This study demonstrates the successful application of a medium-pore zeolite for the catalytic transformation of α-pinene in liquid phase.     

Nitroalkenes and Sesquiterpene Hydrocarbons from the Frontal Gland of Three Prorhinotermes Termite Species

Frontal gland contents of soldiers of three Prorhinotermes species, Prorhinotermes canalifrons, Prorhinotermes inopinatus, and Prorhinotermes simplex, consisted of two groups of compounds: nitroalkenes and sesquiterpene hydrocarbons. Analysis by gas chromatography-mass spectrometry revealed (E)-1-nitropentadec-1-ene as the major component of the glands with mean values of 152, 207, and 293 μg/individual for P. canalifrons, P. inopinatus, and P. simplex, respectively. Four other 1-nitroalkenes (C13, C14, C16, and C17), and two nitrodienes (C15 and C17) were also detected in the three species. The C17:1 nitroalkene was identified as (E)-1-nitroheptadec-1-ene. The sesquiterpene composition of the gland was species-specific: P. simplex contained (3Z,6E)-α-farnesene (mean of 39 μg/individual), while P. canalifrons and P. inopinatus contained the same compound (means of 0.5 and 1.5 μg/individual, respectively) as well as the (3E,6E) isomer (means of 1.8 and 0.7 μg/individual, respectively). Two other sesquiterpenes, trans-β-bergamotene and (Z)-γ-bisabolene, were also found in low quantities in the frontal gland of P. canalifrons.     

Tagged Benzoxazin-4-Ones as Novel Activity-Based Probes for Serine Proteases

Activity-based probes (ABPs) are valuable chemical tools for profiling enzymes. They have been particularly useful in the study of proteases. ABPs rely on electrophilic scaffolds that covalently modify the target enzymes. Ideally, they can be made in a fast and uncomplicated manner. Here, we explore alkyne-substituted benzoxazin-4-ones as ABPs for serine proteases, because they inhibitserine proteases covalently and their synthesis is very straightforward. We show that alkyne-tagged benzoxazin-4-ones can be used in two-step bioorthogonal tandem labeling procedures or pre-functionalized with a biotin or fluorophore. We demonstrate that these reagents can be used to label and identify various serine proteases. Therefore, we expect that tagged benzoxazin-4-ones will offer easily synthesizable tools for profiling of serine proteases.     

Biomarkers of Angiogenesis and Neuroplasticity as Promising Clinical Tools for Stroke Recovery Evaluation

Several key issues impact the clinical practice of stroke rehabilitation including a patient’s medical history, stroke experience, the potential for recovery, and the selection of the most effective type of therapy. Until clinicians have answers to these concerns, the treatment and rehabilitation are rather intuitive, with standard procedures carried out based on subjective estimations using clinical scales. Therefore, there is a need to find biomarkers that could predict brain recovery potential in stroke patients. This review aims to present the current state-of-the-art stroke recovery biomarkers that could be used in clinical practice. The revision of biochemical biomarkers has been developed based on stroke recovery processes: angiogenesis and neuroplasticity. This paper provides an overview of the biomarkers that are considered to be ready-to-use in clinical practice and others, considered as future tools. Furthermore, this review shows the utility of biomarkers in the development of the concept of personalized medicine. Enhancing brain neuroplasticity and rehabilitation facilitation are crucial concerns not only after stroke, but in all central nervous system diseases.     

Electronic Circular Dichroism of the Cas9 Protein and gRNA:Cas9 Ribonucleoprotein Complex

The Streptococcus pyogenes Cas9 protein (SpCas9), a component of CRISPR-based immune system in microbes, has become commonly utilized for genome editing. This nuclease forms a ribonucleoprotein (RNP) complex with guide RNA (gRNA) which induces Cas9 structural changes and triggers its cleavage activity. Here, electronic circular dichroism (ECD) spectroscopy was used to confirm the RNP formation and to determine its individual components. The ECD spectra had characteristic features differentiating Cas9 and gRNA, the former showed a negative/positive profile with maxima located at 221, 209 and 196 nm, while the latter revealed positive/negative/positive/negative pattern with bands observed at 266, 242, 222 and 209 nm, respectively. For the first time, the experimental ECD spectrum of the gRNA:Cas9 RNP complex is presented. It exhibits a bisignate positive/negative ECD couplet with maxima at 273 and 235 nm, and it differs significantly from individual spectrum of each RNP components. Additionally, the Cas9 protein and RNP complex retained biological activity after ECD measurements and they were able to bind and cleave DNA in vitro. Hence, we conclude that ECD spectroscopy can be considered as a quick and non-destructive method of monitoring conformational changes of the Cas9 protein as a result of Cas9 and gRNA interaction, and identification of the gRNA:Cas9 RNP complex.     

Conventional and back-side focused ion beam milling for off-axis electron holography of electrostatic potentials in transistors

Off-axis electron holography is used to characterize a linear array of transistors, which was prepared for examination in cross-sectional geometry in the transmission electron microscope (TEM) using focused ion beam (FIB) milling from the substrate side of the semiconductor device. The measured electrostatic potential is compared with results obtained from TEM specimens prepared using the more conventional 'trench' FIB geometry. The use of carbon coating to remove specimen charging effects, which result in electrostatic fringing fields outside 'trench' specimens, is demonstrated. Such fringing fields are not observed after milling from the substrate side of the device. Analysis of the measured holographic phase images suggests that the electrically inactive layer on the surface of each FIB-milled specimen typically has a thickness of 100 nm.     

Solute Incorporation at Oxide–Oxide Interfaces Explains How Ternary Mixed‐Metal Oxide Nanocrystals Support Element‐Specific Anisotropic Growth

Fundamental understanding of anisotropic growth in oxide nanocrystals is crucial to establish new synthesis strategies and to tailor the nanoscale electronic, magnetic, optical, and electrocatalytic properties of these particles. While several growth investigations of metal alloy nanoparticles have been reported, mechanistic studies on the growth of ternary oxide materials are still missing. This work constitutes the first study on the evolution of anisotropic growth of manganese–cobalt oxide nanoparticles by monitoring the elemental distribution and morphology during the particle evolution via scanning transmission electron microscopy–X‐ray spectroscopy. A new growth mechanism based on a “solution‐solid‐solid” pathway for mixed manganese cobalt oxides is revealed. In this mechanism, the MnO seed formation occurs in the first step, followed by the surface Co enrichment, which catalyzes the growth along the <100> directions in all the subsequent growth stages, creating rod, cross‐, and T‐shaped mixed metal oxides, which preferentially expose {100} facets. It is shown that the interrelation of both Mn and Co ions initializes the anisotropic growth and presents the range of validity of the proposed mechanism as well as the shape‐determining effect based on the metal‐to‐metal ratio.