A Proof-Planning Framework with explicit Abstractions based on Indexed Formulas

A major motivation of proof-planning is to bridge the gap between high-level, cognitively adequate reasoning for specific domains, and calculus-level reasoning to ensure soundness. For high reasoning levels the cognitive adequacy of representation and reasoning techniques is a major issue, while for lower reasoning levels the adequacy wrt. the modelled domain is important. Furthermore, proof construction is an engineering task and there is a need to support the design and application of proof-search engineering methods. To this end we present a framework to explicitly support different reasoning levels. To structure reasoning levels the framework allows for an explicit representation of abstractions and proof-search refinement techniques. In order to ensure soundness within a reasoning level, we use techniques developed in the context of matrix characterisation relying on the notion of indexed formulas. Furthermore, we introduce a uniform concept for contextual reasoning, and sketch basic tacticals for the definition of tactics to organise the overall proof-search inside and across different reasoning levels.     

The Active XML project: an overview

This paper provides an overview of the Active XML project developed at INRIA over the past five years. Active XML (AXML, for short), is a declarative framework that harnesses Web services for distributed data management, and is put to work in a peer-to-peer architecture. The model is based on AXML documents, which are XML documents that may contain embedded calls to Web services, and on AXML services, which are Web services capable of exchanging AXML documents. An AXML peer is a repository of AXML documents that acts both as a client by invoking the embedded service calls, and as a server by providing AXML services, which are generally defined as queries or updates over the persistent AXML documents. The approach gracefully combines stored information with data defined in an intensional manner as well as dynamic information. This simple, rather classical idea leads to a number of technically challenging problems, both theoretical and practical. In this paper, we describe and motivate the AXML model and language, overview the research results obtained in the course of the project, and show how all the pieces come together in our implementation. The first and third authors were partially funded by the European Project Edos. Work done when the second and third authors were at INRIA. Work done when the second and third authors were at INRIA.     

Food vacuole proteome of the malarial parasite Plasmodium falciparum

The Plasmodium falciparum food vacuole (FV) is a lysosome-like organelle where erythrocyte hemoglobin digestion occurs. It is a favorite target in the development of antimalarials. We have used a tandem mass spectrometry approach to investigate the proteome of an FV-enriched fraction and identified 116 proteins. The electron microscopy analysis and the Western blot data showed that the major component of the fraction was the FV and, as expected, the majority of previously known FV markers were recovered. Of particular interest, several proteins involved in vesicle-mediated trafficking were identified, which are likely to play a key role in FV biogenesis and/or FV protein trafficking. Recovery of parasite surface proteins lends support to the cytostomal pathway of hemoglobin ingestion as a FV trafficking route. We have identified 32 proteins described as hypothetical in the databases. This insight into FV protein content provides new clues towards understanding the biological function of this organelle in P. falciparum.     

Oxidation of proteins: Basic principles and perspectives for blood proteomics

Protein oxidation mechanisms result in a wide array of modifications, from backbone cleavage or protein crosslinking to more subtle modifications such as side chain oxidations. Protein oxidation occurs as part of normal regulatory processes, as a defence mechanism against oxidative stress, or as a deleterious processes when antioxidant defences are overcome. Because blood is continually exposed to reactive oxygen and nitrogen species, blood proteomics should inherently adopt redox proteomic strategies. In this review, we recall the biochemical basis of protein oxidation, review the proteomic methodologies applied to analyse redox modifications, and highlight some physiological and in vitro responses to oxidative stress of various blood components.     

Software assessment using metrics: A comparison across large C++ and Java systems

This paper presents an assessment method to evaluate the quality of object oriented software systems. The assessment method is based on source code abstraction, object–oriented metrics and graphical representation. The metrics used and the underlying model representing the software are presented. The assessment method experiment is part of an industrial research effort with the Bell Canada Quality Engineering and Research Group. It helps evaluators assess the quality and risks associated with software by identifying code fragments presenting unusual characteristics. The assessment method evaluates object–oriented software systems at three levels of granularity: system level, class level and method level. One large C++ and eight Java software systems, for a total of over one million lines of code, are presented as case studies. A critical analysis of the results is presented comparing the systems and the two languages.     

Rayonnement en ondes métriques et décimétriques des orages

This article presents the result of the current knowledge on the very high frequency electromagnetic radiation of lightning. A phenomenology analysis of the new results obtained from the study of triggered lightning in New Mexico (TRIP 82) and at Saint-Privat-d’ Allier in Haute-Loire, France (1983) is first described. The authors then present the spectral and temporal characteristics of the VHF/UHF radiation which can be applied to the electromagnetic compatibility of systems. From a synthesis of the experimental and theoretical contributions, they propose a reflection on the lightning initiation process and on the mechanisms generating lightning radiation.     

Intracellular localization of samarium in the lactating mammary gland cells: ultrastructural and microanalytical study

The frequent use of some rare earths in the medical and industrial domains make us worry about their intracellular behavior into the body. Reason for which we have investigated the subcellular localization of one of these elements, the samarium, in the mammary gland of lactating female wistar rats using two very sensitive methods of observation and microanalysis, the transmission electron microscopy and the secondary ion mass spectrometry. The ultrastructural study showed the presence of electron dense deposits in the lactating mammary glandular epithelial cell lysosomes of the samarium-treated rats, but no loaded lysosomes were observed in those of control rats. The microanalytical study allowed both the identification of the chemical species present in those deposits as samarium isotopes ((152) Sm(+)) and the cartography of its distribution. Our results confirm the previous ones showing that lysosomes of the glandular epithelial cells are the site of the intracellular concentration of foreign elements such as gallium. The intralysosomal deposits observed in the mammary glandular cells of the samarium-treated rats are similar in their form and density to those observed with the same element in other varieties of cells, such as liver, bone marrow, and spleen cells. Our ultrastructural and microanalytical results and those obtained in previous studies allow deducing that the intralysosomal deposits are very probably composed of an insoluble samarium phosphate salt.