Physicochemical factors for discriminating between soluble and membrane proteins: hydrophobicity of helical segments and protein length

The average hydrophobicity of a polypeptide segment is consideredto be the most important factor in the formation of transmembranehelices, and the partitioning of the most hydrophobic (MH) segmentinto the alternative nonpolar environment, a membrane or hydrophobiccore of a globular protein may determine the type of proteinproduced. In order to elucidate the importance of the MH segmentin determining which of the two types of protein results froma given amino acid sequence, we statistically studied the characteristicsof MH helices, longer than 19 residues in length, in 97 membraneproteins whose three-dimensional structure or topology is known,as well as 397 soluble proteins selected from the Protein DataBank. The average hydrophobicity of MH helices in membrane proteinshad a characteristic relationship with the length of the protein.All MH helices in membrane proteins that were longer than 500residues had a hydrophobicity greater than 1.75 (Kyte and Doolittlescale), while the MH helices in membrane proteins smaller than100 residues could be as hydrophilic as 0.1. The possibilityof developing a method to discriminate membrane proteins fromsoluble ones, based on the effect of size on the type of proteinproduced, is discussed.     

Efficient bioethanol production from xylose by recombinant saccharomyces cerevisiae requires high activity of xylose reductase and moderate xylulokinase activity

We varied the promoter strength of xylose reductase (XR) gene and the copy number of xylulokinase (XK) gene to determine how XR and XK activities affect the xylose-fermenting abilities of recombinant Saccharomyces cerevisiae expressing xylitol dehydrogenase (XDH). The most enhanced ethanol yield and lowered xylitol yield occurred in strain I-PGK/AUR, which has high activity of both XR and XDH and moderate XK activity.     

A FAST METHOD OF RADIATIVE HEAT TRANSFER ANALYSIS BETWEEN ARBITRARY THREE-DIMENSIONAL BODIES COMPOSED OF SPECULAR AND DIFFUSE SURFACES

The radiation element method by ray emission model (REM²) has been improved by using the law of reciprocity for the specular view factor and the incomplete Cholesky conjugate gradient (ICCG) method to reduce computational time. This improved method was applied to analyze the radiative heat transfer between arbitrary three-dimensional bodies composed of specular and diffuse surfaces. The accuracy of the improved method was evaluated by comparing analytical solutions. And the method was used to calculate radiative heat transfer between machine elements and heater panels. CPU time to calculate the radiative exchange for a model composed of 3193 elements was reduced to 1/430 of that by the previous numerical method using a decomposition method.     

Lactose enhances cellulase production by the filamentous fungus Acremonium cellulolyticus

Acremonium cellulolyticus is a fungus that produces cellulase and has been exploited by enzyme industry. To promote cellulase production by A. cellulolyticus strain C-1, we evaluated the effects of the saccharides: Solka Floc (cellulose), soluble soybean polysaccharide (SSPS), pullulan, lactose, trehalose, sophorose, cellobiose, galactose, sorbose, lactobionic acid, and mixtures as carbon sources for cellulase production. Solka Floc with SSPS enhanced cellulase production. Lactose as the sole carbon source induced cellulase synthesis in this fungus, and the synergistic effects between lactose and Solka Floc was observed. Various enzyme activities and the protein composition of crude enzyme produced by cultures with or without addition of lactose were analyzed. The results showed that lactose addition greatly improves the production of various proteins with cellulase activity by A. cellulolyticus. To our knowledge, this is the first report on production of cellulases by lactose in the A. cellulolyticus.     

Risk assessment of Hydrogen fueling stations for 70 MPa FCVs

People are placing their hopes on the future of fuel-cell vehicles (FCVs) to replace today's gasoline-fueled vehicles. To encourage the widespread use of FCVs, however, these vehicles must be able to drive a distance of at least 500 km, mileage comparable to today's gasoline-fueled vehicles. To achieve this distance, automobile manufacturers are focusing their efforts on developing new hydrogen fuel tanks that will raise pressure to 70 MPa from the current 35 MPa. At the same time, hydrogen stations will also have to be able to provide 70 MPa compressed hydrogen gas to service these improved FCVs. Regulations for hydrogen fueling stations where pressure is no higher than 40 MPa were established in 2005 in Japan but it goes without saying that these regulations are inadequate for hydrogen fueling stations of 70 MPa.     

Measurement method using coupled transmission lines for voltage transients on the distribution line

It is well known that voltage transients are caused by the operation of switchgears in a power system. The voltage transients travel along the power line as a traveling wave, and cause malfunction of electrical devices, communication systems, and the operational error of a control system. The voltage transients at the making operation of switchgear were examined to obtain the fundamental data for considering the immunity of communication systems used on a power system. However, it was difficult to observe the voltage transients using the potential transformer and the capacitance potential device because the transients were very rapid. Therefore, a measurement method using the coupled transmission line system is proposed to measure the high-speed and high-voltage transients, and the actual experimental results on the 6.9-kV power system are presented. This method enables the measurement of high-speed voltage transients in out of contact with the power system.     

Gradually intractable problems and nondeterministic log-space lower bounds

The paper places five different problems (thek-pebble game problem, two problems aboutk finite automata, the reachability problem for Petri nets withk tokens, and the teachability problem for graphs whose k-dimensional edge sets are described by Cartesian products ofk factors) into the hierarchyNL _k of problems solvable by nondeterministic Turing machines ink-log₂ n space (and binary tape alphabet, to avoid tape speed-up). The results, when combined with the conjecture thatNL _i contains problems that requireO(n ^k ) deterministic time, show that these problems, while inP for every fixed value ofk, have polynomial deterministic time complexities with the degree of the polynomial growing linearly with the parameterk, and hence are, in this sense, gradually intractable.     

Inhibitory Effect of 8‐Halogenated 7‐Deaza‐2′‐deoxyguanosine Triphosphates on Human 8‐Oxo‐2′‐deoxyguanosine Triphosphatase,hMTH1, Activities

hMTH1 (8‐oxo‐2′‐deoxyguanine triphosphatase) hydrolyzes oxidized nucleoside triphosphates; its presence is non‐essential for survival of normal cells but is required for survival of cancer cells. In this study, 8‐halogenated‐7‐deaza‐2′‐deoxyguanosine triphosphate (8‐halogenated‐7‐deazadGTP) derivatives were synthesized. Interestingly, these triphosphates were poor substrates for hMTH1, but exhibited strong competitive inhibition against hMTH1 at nanomolar levels. This inhibitory effect is attributed to slower rate of hydrolysis, possibly arising from enzyme structural changes, specifically different stacking interactions with 8‐halogenated‐7‐deazadGTP. This is the first example of using nucleotide derivatives to inhibit hMTH1, thus demonstrating their potential as antitumor agents.