Genomic Analysis Made It Possible to Identify Gene-Driver Alterations Covering the Time Window between Diagnosis of Neuroblastoma 4S and the Progression to Stage 4

Neuroblastoma (NB) is a tumor of the developing sympathetic nervous system. Despite recent advances in understanding the complexity of NB, the mechanisms that determine its regression or progression are still largely unknown. Stage 4S NB is characterized by a favorable course of disease and often by spontaneous regression, while progression to true stage 4 is a very rare event. Here, we focused on genomic analysis of an NB case that progressed from stage 4S to stage 4 with a very poor outcome. Array-comparative genomic hybridization (a-CGH) on tumor-tissue DNA, and whole-exome sequencing (WES) on exosomes DNA derived from plasma collected at the onset and at the tumor progression, pointed out relevant genetic changes that can explain this clinical worsening. The combination of a-CGH and WES data allowed for the identification iof somatic copy number aberrations and single-nucleotide variants in genes known to be responsible for aggressive NB. KLRB1, MAPK3 and FANCA genes, which were lost at the time of progression, were studied for their possible role in this event by analyzing in silico the impact of their expression on the outcome of 786 NB patients.     

The ATP-binding site of protein kinase CK2 holds a positive electrostatic area and conserved water molecules

CK2 is a highly pleiotropic Ser/Thr protein kinase that is able to promote cell survival and enhance the tumour phenotype under specific circumstances. We have determined the crystal structure of three new complexes with tetrabromobenzimidazole derivatives that display K(i) values between 0.15 and 0.30 microM. A comparative analysis of these data with those of four other inhibitors of the same family revealed the presence of some highly conserved water molecules in the ATP-binding site. These waters reside near Lys68, in an area with a positive electrostatic potential that is able to attract and orient negatively charged ligands. The presence of this positive region and two unique bulky residues that are typical of CK2, Ile66 and Ile174, play a critical role in determining the ligand orientation and binding selectivity.     

Gas–Surface Interactions on Quasicrystals

To commemorate the awarding of the Nobel Prize for Chemistry to Daniel Shechtman for his discovery of quasicrystals, this paper reviews our recent studies of the interaction of rare gases and hydrocarbon gases with the tenfold surface of quasicrystalline decagonal Al-Co-Ni.     

Nanoindentation Characterization of Submicro- and Nano-Sized Liquid-Phase-Sintered SiC Ceramics

Submicro- and nano-sized liquid-phase-sintered SiC ceramics were mechanically tested by nanoindentation in the peak load range 5–400 mN. The submicro-sized sample showed a marked indentation size effect which the nano-sized samples did not exhibit. The relevance of indentation depth with respect to the microstructural scale has been outlined. In the investigated grain-size range, the hardness dependence on the grain size could be described by a load-dependent inverse Hall–Petch relation. Young's modulus was less microstructure- and load-dependent. Because of the very fine microstructure, the nano-sized SiC materials gave lower elastic values than the submicro-sized SiC ceramic.     

<Superscript>1</Superscript>H NMR characterization of milk lipids: A comparison between cow and buffalo milk

Characterization of the lipid fraction of raw cow and buffalo milk samples, collected in different breeding areas in Apulia, a region of southern Italy, were performed by means of ¹H NMR. The aim of this work was to establish whether FA composition data obtained by ¹H NMR can be used in the differentiation of buffalo and cow milk samples according to species. A complete assignment of the signals present in the spectrum was attempted by COSY, heteronuclear coherence spectra. Quantification of FA was carried out by inserting the integrals of particular peaks in suitable calculations. Multivariate statistical analysis, conducted on the results of the quantification, permitted buffalo and cow milks to be distinguished.     

The photoinduced charge transfer mechanism in aligned and unaligned carbon nanotubes

Using time-resolved reflectivity measurements on unaligned and aligned bundled single-wall carbon nanotubes with a pump energy of 1.55 eV, quasi-resonant with the second Van Hove singularity of semiconducting tubes, a positive sign of the transient reflectivity is detected in unaligned nanotubes. In contrast a negative sign is detected in aligned nanotubes. This discovery addresses a long-standing question showing that in unaligned nanotubes the stronger intertube interactions favor the formation of short-lived free charge carriers in semiconducting tubes. A detailed analysis of the transient reflectivity spectral response shows that the free carriers in the photo-excited state of semiconducting tubes move towards metallic tubes in about 400 fs.     

Degradation and stabilization of poly(3-hexylthiophene) thin films for photovoltaic applications

Polymer-based solar cells (PSC) represent a promising technology in the field of photovoltaics, although they still suffer from poor environmental stability. Poly(3-hexylthiophene) (P3HT) is one of the most commonly employed electron-donor materials for the preparation of the photo-active layer of PSC and it is known to undergo degradation when exposed to light. In this work, the degradation of P3HT was studied by irradiating polymer films by means of simulated sunlight. The results of this study highlighted a remarkable instability of P3HT. Substantial modifications of the infrared as well as of the UV–Vis spectra of the polymer were reported and a degradation pathway was suggested, in agreement with recent literature results. In order to stabilize the structure, two additives were evaluated namely a standard Hindered Amine Light Stabilizer (HALS) and Multi-Walled Carbon Nanotubes (MWCNT). The addition of MWCNT appeared to significantly reduce the rate of degradation.     

Water�CGas Shift and CO Methanation Reactions over Ni�CCeO2(111) Catalysts

X-ray and ultraviolet photoelectron spectroscopies were used to study the interaction of Ni atoms with CeO₂(111) surfaces. Upon adsorption on CeO₂(111) at 300 K, nickel remains in a metallic state. Heating to elevated temperatures (500?C800 K) leads to partial reduction of the ceria substrate with the formation of Ni²⁺ species that exists as NiO and/or Ce_1?xNi_xO_2?y. Interactions of nickel with the oxide substrate significantly reduce the density of occupied Ni 3d states near the Fermi level. The results of core-level photoemission and near-edge X-ray absorption fine structure point to weakly bound CO species on CeO₂(111) which are clearly distinguishable from the formation of chemisorbed carbonates. In the presence of Ni, a stronger interaction is observed with chemisorption of CO on the admetal. When the Ni is in contact with Ce⁺³ cations, CO dissociates on the surface at 300 K forming NiC_x compounds that may be involved in the formation of CH₄ at higher temperatures. At medium and large Ni coverages (>0.3 ML), the Ni/CeO₂(111) surfaces are able to catalyze the production of methane from CO and H₂, with an activity slightly higher than that of Ni(100) or Ni(111). On the other hand, at small coverages of Ni (<0.3 ML), the Ni/CeO₂(111) surfaces exhibit a very low activity for CO methanation but are very good catalysts for the water?Cgas shift reaction.     

Methyldibenzothiophene isomer ratio in crude oils: Gas chromatography tandem mass spectrometry analysis

The quantification of Methyldibenzothiophene isomers (MDBTs) is used in the geochemical characterization of crude oils. The relative ratio of these isomers can give useful information about the nature and the maturity of the source rock. This paper describes a novel analytical technique for the quantitative determination of MDBTs through triple quadrupole tandem mass spectrometry (GC-MS/MS). Through the multiple reaction monitoring (MRM) scan mode, it was possible to reach high selectivity for the MDBTs and their quantification was obtained without preliminary fractionation of the crude oil. In order to reduce the carryover of high boiling components, a recently developed backflush system in the GC program was applied. This novel protocol has been tested on sixteen samples of crude oil from different oil fields around the world. It was concluded to be more reliable than previously reported analytical methods based on selected ion monitoring (SIM) scan mode.