Deductive Synthesis of Numerical Simulation Programs from Networks of Algebraic and Ordinary Differential Equations

Scientists and engineers face recurring problems of constructing, testing and modifying numerical simulation programs. The process of coding and revising such simulators is extremely time-consuming, because they are almost always written in conventional programming languages. Scientists and engineers can therefore benefit from software that facilitates construction of programs for simulating physical systems. Our research adapts the methodology of deductive program synthesis to the problem of constructing numerical simulation codes. We have focused on simulators that can be represented as second order functional programs composed of numerical integration and root extraction routines. We have developed a system that uses first order Horn logic to synthesize numerical simulators built from these components. Our approach is based on two ideas: first, we axiomatize only the relationship between integration and differentiation. We neither attempt nor require a complete axiomatization of mathematical analysis. Second, our system uses a representation in which functions are reified as objects. Function objects are encoded as lambda expressions. Our knowledge base includes an axiomatization of term equality in the lambda calculus. It also includes axioms defining the semantics of numerical integration and root extraction routines. We use depth bounded SLD resolution to construct proofs and synthesize programs. Our system has successfully constructed numerical simulators for computational design of jet engine nozzles and sailing yachts, among others. Our results demonstrate that deductive synthesis techniques can be used to construct numerical simulation programs for realistic applications.     

Microstructure and bonding properties of diffusion–bonded composite comprising an Fe–Al alloy and carbon steel

This study discusses microstructure evolution, diffusion behavior and bonding strength of a couple comprising of an iron aluminium alloy (Fe–Al) and high carbon-steel (FeCMn) during diffusion bonding. A columnar microstructure evolves from the joint interface toward FeCMn and disappears in couples bonded for a long period. Aluminium diffusion from Fe–Al to FeCMn and columnar microstructure evolution are retarded as compared to a couple consisting of an Fe–Al and ferrite steel. The carbide in the FeCMn impedes the aluminium diffusion and retards the columnar grain evolution. When the carbide is dissolved in the ferrite during the aluminium diffsuion from Fe–Al, coarse grains evolve due to the coalescence of the columnar grains and a high-bonding strength is obtained. The hardness variation is minimum in the FeCMn of a couple bonded for a short period, which is explained by the microstructural changes in the columnar grain evolution and carbide dissociation.     

Carboquone therapy for hematologic neoplasms

A daily oral dose of 1-2 mg of Carboquone was administered for remission induction to 38 patients with hematologic malignancy, and the following results were obtained: 2 of the 3 patients with malignant lymphoma, 1 of the 12 patients with multiple myeloma, 13 of the 14 patients with chronic myelogenous leukemia, and all 9 patients with polycythemia vera attained complete remission.     

A Toolkit for Generating and Displaying Proof Scores in the OTS/CafeOBJ Method

The OTS/CafeOBJ method can be used to model, specify and verify distributed systems. Specifications are written in equations, which are regarded as rewrite rules and used to verify specifications. The usefulness of the method is demonstrated by applying the method to nontrivial problems such as electronic commerce protocols and railroad signaling systems. In this paper we describe a toolkit called Buffet, which assists verification in the method. Given predicates used to split cases and lemmas, Buffet automatically generates proofs (called proof scores) and checks the proof scores using the CafeOBJ system. Buffet also has facilities to display proof scores generated and verification results on a web browser.     

A web browsing system for cellular-phone users based on adaptive presentation

Cellular phones are widely used to access the Web. However, most available Web pages are designed for desktop PCs, and it is inconvenient to browse these large Web pages on a cellular phone with a small screen and poor interfaces. Users who browse a Web page on a cellular phone have to scroll through the whole page to find the desired content, and must then search and scroll within that content in detail to get useful information. This paper describes the design and implementation of a novel Web browsing system for cellular phones. This system includes a Web page overview to reduce scrolling operations when finding objective content within the page. Furthermore, it adaptively presents content according to its characteristics to reduce burdensome operations when searching within content.     

Calorimetric characterization of critical targets for killing and acquired thermotolerance in yeast

We characterized thermal behaviours of cellular components by differential scanning calorimetry (DSC) in order to investigate how Saccharomyces cerevisiae cells acquire thermotolerance after heat shock or in stationary phase. Whole-cell DSC profiles consisted of at least five endothermic components over the range 45-75 degrees C for exponentially growing, heat-shocked and stationary-phase cells. In these profiles, we attempted to localize the endothermic profiles due to denaturation of the two critical targets which were predicted by using the Arrhenius parameters of hyperthermic killing of the cells (Obuchi et al., 1998). This prediction indicated that (a) the heat shock stabilized one family of targets and destabilized the other, while (b) arrest in stationary phase stabilized both targets. Therefore, the heat-shock response does not stabilize all cellular components, and arrest in stationary phase appears to stabilize cellular components in a different manner from the heat-shock response. It was not possible unambiguously to resolve the profiles of the critical targets in the DSC scans of whole cells. Components I (T(m)=49.7 degrees C) and II (T(m)=56.1 degrees C) may both include denaturations of critical targets 1 (T(m)=55.4 degrees C) and 2 (T(m)=53.0 degrees C) in exponential cells. Components I and II were both stabilized (T(m)=53.5 and 57.2 degrees C, respectively) in heat-shocked cells. Sub-cellular fractions suspended in 1.2 M trehalose solution, which mimics the cytosol in tolerant cells, were more stable than those in 0.6 M KCl, which mimics the cytosol in sensitive cells. The microsomal fractions in KCl and trehalose had endothermic profiles in similar temperature ranges to those predicted for sensitive and tolerant cells, respectively. This agreement suggests that the microsomal fraction may contain critical targets, and that trehalose accumulation in the heat-shocked and in the stationary phase yeast cells is a stabilizer of cellular components.     

Growth process of CuO(1 1 1) and Cu2O(0 0 1) thin films on MgO(0 0 1) substrate under metal-mode condition by reactive dc-magnetron sputtering

The growth process of CuO and Cu₂O thin films on MgO(0 0 1) substrates by reactive dc-magnetron sputtering was studied by reflection high-energy electron diffraction (RHEED) and atomic-force microscopy (AFM). The RHEED pattern and AFM image showed that (1) three-dimensional Cu(0 0 1) islands grew on MgO under the nonreactive sputtering condition, (2) CuO(1 1 1) was deposited layer by layer on MgO at 400 °C under the reactive sputtering condition, and (3) the film deposited at 600 °C in the initial growth stage was composed of three-dimensional Cu islands because O₂ gas could not be incorporated into them due to the low sticking coefficient of O₂ on MgO under the reactive sputtering condition. The layer-by-layer CuO(1 1 1) thin-film growth process is discussed from the viewpoint that Cu and oxygen species are supplied in stoichiometry onto the MgO substrate to form CuO thin-film crystals while maintaining minimum interfacial energy between CuO and MgO.     

Uniaxial tensile and shear deformation tests of gold-tin eutectic solder film

This paper describes a novel experimental technique for measuring mechanical properties of gold-tin (Au-Sn) eutectic solder film used for soldering package in microelectromechanical systems (MEMS). Dual-source DC magnetron sputtering was employed to deposit Au-20 weight % (wt%) Sn film. The tensile test with in situ X-ray diffraction (XRD) measurement evaluates the Young's modulus and Poisson's ratio at intermediate temperatures. The Young's modulus and Poisson's ratio at room temperature were found to be 51.3 GPa and 0.288, lower than bulk values. The Young's modulus decreased with increasing temperature, whereas the Poisson's ratio did not depend on temperature. The XRD tensile test also showed creep deformation behavior of Au-Sn film. We have developed a shear deformation test technique, which is performed by using Au-Sn film sandwiched by two single crystal silicon (Si) cantilever structures, to characterize the shear properties of the film. The shear moduli obtained from the shear deformation tests ranged from 11.5 to 13.3 GPa, about 38% lower than those from the XRD tensile tests. The measured shear strength from 12 to 17 MPa exhibited a temperature dependency. Information about the tensile and shear characteristics would likely to be of great use in designing Au-Sn soldering packages for MEMS.     

Chemical speciation and association of plutonium with bacteria, kaolinite clay, and their mixture

We investigated the interactions of Pu(VI) with Bacillus subtilis, kaolinite clay, and a mixture of the two to determine and delineate the role of the microbes in regulating the environmental mobility of Pu. The bacteria, the kaolinite, and their mixture were exposed to a 4 x 10(-4) M Pu(VI) solution at pH 5.0. The amount of Pu sorbed by B. subtilis increased with time, but had not reached equilibrium in 48 h, whereas equilibrium was attained in kaolinite within 8 h. After 48 h, the oxidation state of Pu in the solutions exposed to B. subtilis and the mixture had changed to Pu-(V), whereas the oxidation state of Pu associated with B. subtilis and the mixture was Pu(IV). Exudates released from B. subtilis reduced Pu(VI) to Pu(V). In contrast, there was no change in the oxidation state of Pu in the solution or on kaolinite after exposure to Pu(VI). Scanning electron microscopy-energy dispersive spectrometry analysis indicated that most of the Pu in the mixture was associated with B. subtilis. These results suggest that Pu-(IV) is preferably sorbed to bacterial cells in the mixture and that Pu(VI) is reduced to Pu(V) and Pu(IV).     

Technique for quantitative detection of specific DNA sequences using alternately binding quenching probe competitive assay combined with loop-mediated isothermal amplification

We describe a novel technique for a simple, rapid, and reliable quantitative detection of specific DNA sequences using an alternately binding quenching probe (AB-QProbe) that binds to either the gene of interest (target) or an internal standard (competitor) in combination with loop-mediated isothermal amplification (LAMP). The AB-QProbe is a singly labeled oligonucleotide bearing a fluorescent dye at the 5' end. The fluorescence intensity of the AB-QProbe reflects the ratio of the LAMP products from the target and competitor. We amplified the target and competitor by LAMP under isothermal conditions with high specificity, efficiency, and rapidity and calculated the starting quantity of the target from the fluorescence intensities at the beginning and end of LAMP. We call this technique alternately binding quenching probe competitive LAMP (ABC-LAMP). We quantified amoA, which encodes the ammonia-oxidizing enzyme in environmental bacteria, as a model target by ABC-LAMP, real-time PCR, and real-time turbidimetry of LAMP. By comparison, the accuracy of ABC-LAMP was found to be similar to that of real-time PCR. Moreover, ABC-LAMP enables the accurate quantification of DNA in the presence of DNA amplification inhibitors such as humic acid, urea, and Triton X-100 that compromise the values measured by real-time PCR and real-time turbidimetry of LAMP.