Quantitative analysis of synapse structure with a semiautomatic interactive computer system: A study on identified pyramidal tract neurons in the sensory-motor cortex of cat

Pyramidal tract (Pt) neurons in the sensory-motor cortex of cat were labeled by injection of HRP into the spinal cord. Ultrastructural and quantitative analysis of the synaptic covering of their soma and apical dendrite (up to 100 μm from soma) was undertaken. We intercalated a visual-manual treatment between composite electron micrographs and a fully automated computer system and developed specific programs for evaluation of the morphometric data. Programs are included. A total of 412 synaptic boutons were examined that were found in contact with large Pt neurons. The mean linear percentage of the surface area covered by boutons was 26.2 ± 8.4% and the mean contacting length and cross-sectional area of the bouton profiles were 1.28 ± 0.58 μm and 0.89 ± 0.59 μm², respectively. All types of boutons with active zones accounted for 41.2% of the total. The distribution of two types of bouton (S- and F-type boutons, showing asymmetric and symmetric contacts, respectively) was examined quantitatively. The mean proportion of F-type boutons was 89.1% with a soma and S-type boutons contacting apical dendrites was 10.9%. In addition, GABAergic boutons were identified with the soma by immunocytochemistry with antibodies against glutamic acid decarboxylase. They formed symmetric synaptic contacts with the Pt cells that were identical to those formed by F-type boutons. The quantitative analysis revealed that synaptic clefts are narrower and synaptic vesicles are smaller in symmetric F-type boutons than in S-type boutons forming asymmetric contacts. These data establish that at least three parameters (postsynaptic density, synaptic cleft, and size of vesicles) can be utilized singly or in combination to identify GABAergic inhibitory synapses in neocortex.     

A new backpropagation learning algorithm for layered neural networks with nondifferentiable units

We propose a digital version of the backpropagation algorithm (DBP) for three-layered neural networks with nondifferentiable binary units. This approach feeds teacher signals to both the middle and output layers, whereas with a simple perceptron, they are given only to the output layer. The additional teacher signals enable the DBP to update the coupling weights not only between the middle and output layers but also between the input and middle layers. A neural network based on DBP learning is fast and easy to implement in hardware. Simulation results for several linearly nonseparable problems such as XOR demonstrate that the DBP performs favorably when compared to the conventional approaches. Furthermore, in large-scale networks, simulation results indicate that the DBP provides high performance.     

Effects of Pretreatments of Cu/ZnO-Based Catalysts on Their Activities for the Water–Gas Shift Reaction

The effects of the pretreatments of Cu/ZnO-based catalysts prepared by a coprecipitation method on their activities for the water–gas shift reaction at 523K were investigated. The activity of a Cu/ZnO/ZrO₂/Al₂O₃ catalyst for the water–gas shift reaction was less affected by calcination at temperatures ranging from 673-973K and by H₂ treatment at 573 or 723K than that of a Cu/ZnO/Al₂O₃ catalyst. The catalyst activity could be correlated mainly to the Cu surface area of the catalyst.     

Hot Isostatic Pressing of Alumina and Examination of the Hot Isostatic Pressing Map

The hot isostatic pressing (HIP) of four alumina powders is studied in the temperature range 1100° to 1400°C, at 5- to 200-MPa applied pressure, and for times ranging from 0.5 to 4 h. Density increases with increasing HIP temperature, pressure, and time; decreasing grain size results in increased density after HIP. An empirical relation is derived for grain growth during HIP, and the HIP map proposed by Helle et al. is found applicable to the present results. Densification is governed by the grain-boundary diffusion of aluminum ions; with the transport coefficient and the grain-growth values found in the present study, the map can be used to express experimental results to within a factor of 4 for all densification stages except near full density.     

Reaction with metal ions of chloromethylated polystyrene resin containing dithiocarbamate group

The derivatives of poly(chloromethylstyrene) resin (PCMS) with N-methyl-N-carboxylmethyl-dithiocarbamate (1), N,N-di(β-hydroxyethyl)dithiocarbamate (2), N-methyl-N-carboxylmethylamino (3), and di(β-hydroxyethyl)amino (4) groups were prepared, and the metal ion reactivity of the polymer resins with these functional groups were investigated. Additionally, the effect of γ irradiation on the reaction with metal ion was also investigated. In the reaction of PCMS under the same conditions, the substitution ratio order is as follows: (2) > (1) > (4) > (3). In the reaction of the resins with cupric ion, the reaction amount reached a maximum of 4.17 mequiv/g for resin (1) and 4.75 mequiv/g for (2). The polymers containing sulfur atom have a large reactivity toward metal ion in comparison to the polymers without sulfur atom. The reactivity of polymer (1) toward metal ions decreased in the following order: Ag(I) ? Cu(II)> Zn(II) ? Ni(II) ? Co(II). The other metal ions, except Ag(I) and Cu(II), hardly reacted with polymer (2). Thus, polymer (2) has a remarkable selectivity. It was also found that the reaction amount of polymers containing sulfur after γ irradiation is almost the same as that before γ irradiation.     

Finding Essential Attributes from Binary Data

We consider data sets that consist of n-dimensional binary vectors representing positive and negative examples for some (possibly unknown) phenomenon. A subset S of the attributes (or variables) of such a data set is called a support set if the positive and negative examples can be distinguished by using only the attributes in S. In this paper we study the problem of finding small support sets, a frequently arising task in various fields, including knowledge discovery, data mining, learning theory, logical analysis of data, etc. We study the distribution of support sets in randomly generated data, and discuss why finding small support sets is important. We propose several measures of separation (real valued set functions over the subsets of attributes), formulate optimization models for finding the smallest subsets maximizing these measures, and devise efficient heuristic algorithms to solve these (typically NP-hard) optimization problems. We prove that several of the proposed heuristics have a guaranteed constant approximation ratio, and we report on computational experience comparing these heuristics with some others from the literature both on randomly generated and on real world data sets.     

Performance and characterization of Ru/Al2O3 and Ru/SiO2 catalysts modified with Mn for Fischer–Tropsch synthesis

Mn effect and characterization on γ-Al₂O₃-, -Al₂O₃- and SiO₂-supported Ru catalysts were investigated for Fischer–Tropsch synthesis under pressurized conditions. In the slurry phase Fischer–Tropsch reaction, γ-Al₂O₃ catalysts showed higher performance on CO conversion and C₅⁺ selectivity than -Al₂O₃ and SiO₂ catalysts. Moreover, Ru/Mn/γ-Al₂O₃ exhibited high resistance to catalyst deactivation and other catalysts were deactivated during the reaction. From characterization results on XRD, TPR, TEM, XPS and pore distribution, Ru particles were clearly observed over the catalysts, and γ-Al₂O₃ catalysts showed a moderate pore and particle size such as 8 nm, where -Al₂O₃ and SiO₂ showed highly dispersed ruthenium particles. The addition of Mn to γ-Al₂O₃ enhanced the removal of chloride from RuCl₃, which can lead to the formation of metallic Ru with moderate particle size, which would be an active site for Fischer–Tropsch reaction. Concomitantly, manganese chloride is formed. These schemes can be assigned to the stable nature of Ru/Mn/γ-Al₂O₃ catalyst.     

Nutritional enrichment of larval fish feed with thraustochytrid producing polyunsaturated fatty acids and xanthophylls

In marine aquaculture, rotifers and Artemia nauplii employed as larval fish feed are often nutritionally enriched with forage such as yeast and algal cells supplemented with polyunsaturated fatty acids and xanthophylls, which are required for normal growth and a high survival ratio of fish larvae. To reduce the enrichment steps, we propose here the use of a marine thraustochytrid strain, Schizochytrium sp. KH105, producing docosahexaenoic acid, docosapentaenoic acid, canthaxanthin, and astaxanthin. The KH105 cells prepared by cultivation under optimized conditions were successfully incorporated by rotifers and Artemia nauplii. The contents of docosahexaenoic acid surpassed the levels required in feed for fish larvae, and the enriched Artemia showed an increased body length. The results demonstrate that we have developed an improved method of increasing the dietary value of larval fish feed.     

Degradation of carbendazim and 2,4-dichlorophenoxyacetic acid by immobilized consortium on loofa sponge

A fungicide, carbendazim (methyl-2-benzimidazole carbamate; MBC), and a herbicide, 2,4-dichlorophenoxyacetic acid (2,4-D), could be simultaneously degraded by a microbial consortium obtained from several soil samples in Japanese paddy fields with enrichment continuous culture. The degradation ability of the consortium was increased by immobilization on loofa (Luffa cylindrica) sponge in comparison with that of free-living consortium. MBC and 2,4-D were completely degraded within 5.5 d and 1.5 d, respectively. The toxicity of these pesticides in culture medium to Daphnia magna was reduced by treatment with the consortium corresponding to their degradation. The degradation ability of the immobilized consortium at pHs in the range from 6 to 9, at temperatures from 15 degrees C to 37 degrees C, and at low NH(4)(+)-N concentrations (1-10 mg/l) was not very different from that under the basal condition (pH 7, 30 degrees C, 424 mg/l NH(4)(+)-N and 472 mg/l PO(4)(3)(-)-P). At low pHs 4 and 5, the ability was significantly lower than that of the basal condition. Moreover, incubation at low PO(4)(3)(-)-P concentrations (1-10 mg/l) caused a decrease in pH at which the degradation ability also became lower. However, the ability in this culture completely recovered when pH was adjusted to 7 or the phosphate concentration was increased to the basal level. Analysis by denaturing gradient gel electrophoresis (DGGE) showed the whole population of the consortium became faint at low pH or low phosphate concentrations but became distinct again as much as those under the basal conditions, indicating that the decrease in the degradation ability caused by low pH was due to that whole population of the consortium underwent serious damage but could survive and recover. These results suggest the immobilized consortium on loofa sponge is a promising material for bioremediation of polluted water with these pesticides in paddy fields.     

Analysis of a catalytic pathway via a covalent adduct of D52E hen egg white mutant lysozyme by further mutation

We previously demonstrated by X-ray crystallography and electrospraymass spectrometry that D52E mutant hen lysozyme formed a covalentenzyme–substrate adduct on reaction with N-acetylglucosamineoligomer. This observation indicates that D52E lysozyme mayacquire a catalytic pathway via a covalent adduct. To explainthis pathway, the formation and hydrolysis reactions of thecovalent adduct were investigated. Kinetic analysis indicatedthat the hydrolysis step was the rate-limiting step, 60-foldslower than the formation reaction. In the formation reaction,the pH dependence was bell-shaped, which was plausibly explainedby the functions of the two catalytic pK_as of Glu35 and Glu52.On the other hand, the pH dependence in the hydrolysis was sigmoidalwith a transition at pH 4.5, which was identical with the experimentallydetermined pK_a of Glu35 in the covalent adduct, indicating thatGlu35 functions as a general base to hydrolyze the adduct. Toimprove the turnover rate of D52E lysozyme, the mutation ofN46D was designed and introduced to D52E lysozyme. This mutationreduced the activation energy in the hydrolysis reaction ofthe covalent adduct by 1.8 kcal/mol at pH 5.0 and 40°C butdid not affect the formation reaction. Our data may providea useful approach to understanding the precise mechanism ofthe function of natural glycosidases, which catalyze via a covalentadduct.