Structural analysis of substrate binding by the molecular chaperone DnaK

DnaK and other members of the 70-kilodalton heat-shock protein (hsp70) family promote protein folding, interaction, and translocation, both constitutively and in response to stress, by binding to unfolded polypeptide segments. These proteins have two functional units: a substrate-binding portion binds the polypeptide, and an adenosine triphosphatase portion facilitates substrate exchange. The crystal structure of a peptide complex with the substrate-binding unit of DnaK has now been determined at 2.0 angstroms resolution. The structure consists of a beta-sandwich subdomain followed by alpha-helical segments. The peptide is bound to DnaK in an extended conformation through a channel defined by loops from the beta sandwich. An alpha-helical domain stabilizes the complex, but does not contact the peptide directly. This domain is rotated in the molecules of a second crystal lattice, which suggests a model of conformation-dependent substrate binding that features a latch mechanism for maintaining long lifetime complexes.     

Host-dependent activation of IS1203v excision in Shiga toxin-producing Escherichia coli

IS1203v is an insertion sequence (IS) which is identical to the most abundant IS elements in the genome of Escherichia coli O157:H7. However, there is no sequence homologous to IS1203v in the genome of E. coli K-12. We constructed a system to analyze the excision frequency of IS1203v, and demonstrated that the frequency in E. coli O157:H7 was approximately 10(5) times higher than that in E. coli K-12. We also investigated the excision frequencies of IS1203v in various E. coli isolates, and showed that the excision frequencies of IS1203v-possessing strains were approximately 10(3) times higher than those of IS1203v-nonpossessing strains. The results suggest that the IS1203v-possessing strains use a common system to enhance IS1203v excision.     

Hiding an image with a light-scattering medium and use of a contrast-discrimination method for readout

Hiding image data with a material such as a light-scattering medium is useful as an initial stage of data protection, because the hidden image can be detected only by observation with a specific technique. A light-scattering medium is used to hide the image data, and a low-temporal-coherence interferometer performs the readout processing. A new readout method for detecting pixel values of the image is proposed to overcome spatial variation of the light intensity and distortion of the interference fringes. The introduction of spatial coding further improves the performance by overcoming spatial variations of the light-scattering medium and variations in the reflectance of given pixels.     

Petroleum components and objectionable malodorous substances in fish flesh polluted by boiler fuel oil

Green fish (Girella punctata) and eel (Angulla rostrata) were reared in two types of artificially oil-polluted test dilutions for the purpose of measuring the petroleum substances infiltrating the flesh. One test dilution contained untreated mineral oil and the other test dilution contained residue mineral oil after chemical treatment. Vapours from fish flesh samples were analyzed by gas chromatography. Unsaturated aliphatic hydrocarbons and some aromatic hydrocarbons were revealed as sources of the repugnant odour.     

Modification of cleanup methods for dioxin analysis in green leafy vegetables and comparison of packing methods for a multi-layer silica gel column

To determine polychlorinated dibenzo-p-dioxins (PCDDs), polychlorinated dibenzofurans (PCDFs) and coplanar polychlorinated biphenyls (Co-PCBs) in green leafy vegetables, the cleanup method was modified, and packing methods for a multi-layer silica gel column were compared in food samples. First, the additional cleanup was examined for a mono-ortho PCBs fraction obtained by alumina column chromatography from spinach extract. Small solids such as rough crystals that remained after concentration of the mono-ortho PCBs fraction were identified as long-chain hydrocarbons from leaf epicuticular wax by GC/MS. Cleanup using an activated carbon silica gel column with n-hexane as the washing solvent was effective. Next, multi-layer silica gel columns packed by wet packing and dry packing were compared using komatsuna, salmon and butter as samples. The columns prepared by both methods gave similar values at each isomeric concentration level and showed similar efficiency with favorable recoveries.     

All-optical wavelength conversion in a GaInAsP/InP optical gate loaded with a Bragg reflector

All-optical wavelength conversion employing a GaInAsP/InP nonlinear distributed-feedback waveguide switch is investigated. The device has the advantages of simple structure, compactness, polarity-noninverted operation, and feasibility of integration with other photonic devices such as semiconductor optical amplifier and modulators. We show that the device exhibits constant conversion efficiency around -9.2 dB in a signal-wavelength range of 1530-1560 nm. Furthermore, this device can potentially be made polarization independent.