Performance evaluation of the SX‐6 vector architecture for scientific computations

The growing gap between sustained and peak performance for scientific applications is a well‐known problem in high‐performance computing. The recent development of parallel vector systems offers the potential to reduce this gap for many computational science codes and deliver a substantial increase in computing capabilities. This paper examines the intranode performance of the NEC SX‐6 vector processor, and compares it against the cache‐based IBM Power3 and Power4 superscalar architectures, across a number of key scientific computing areas. First, we present the performance of a microbenchmark suite that examines many low‐level machine characteristics. Next, we study the behavior of the NAS Parallel Benchmarks. Finally, we evaluate the performance of several scientific computing codes. Overall results demonstrate that the SX‐6 achieves high performance on a large fraction of our application suite and often significantly outperforms the cache‐based architectures. However, certain classes of applications are not easily amenable to vectorization and would require extensive algorithm and implementation reengineering to utilize the SX‐6 effectively. Copyright © 2005 John Wiley & Sons, Ltd.     

Seismic Performance of Hillside Fills

Permanent ground deformations in unsaturated, compacted hillside fills under seismic loading conditions are discussed, with emphasis given to fill performance during the 1994 Northridge earthquake. These movements represent a significant yet often unrecognized hazard to developed hillside areas, as relatively modest deformations induced widespread damage totaling hundreds of millions of dollars during the Northridge event. The development of grading standards in the Los Angeles area is reviewed to place the seismic fill deformation problem in context with other issues that have shaped design and construction practices for hillside fills. Field observational data on fill performance during the Northridge earthquake is presented, and typical ground distress patterns are found to include cracking near cut/fill contacts, lateral extension and settlement of fill pads, and bulging of fill slope faces. For most sites, the prevalent mechanism of permanent ground deformation responsible for the fill movements is contractive volumetric strain accumulation within the unsaturated fill soils during strong earthquake shaking (that is, seismic compression).     

Integral Abutment Bridges: Current Practice in United States and Canada

Integral abutment bridges have been gaining popularity among bridge owners as cost-effective alternatives to bridges with conventional joints. They reduce initial construction costs and long-term maintenance expenses, improve seismic resistance, and extend long-term serviceability. New York has been building them since the late 1970s, with a wide variety of details, and they have been performing well. For further improvement of New York's design practice, a comparative survey was undertaken across North America, focusing on design and construction of both substructures and superstructures. In all, 39 states and Canadian provinces responded, including 8 who said they had no experience with these bridges. Responses are analyzed and summarized in this paper. Overall, integral abutment bridges are performing as well as, if not better than, conventional bridges, but no uniform national standards exist for their design. Design practices and assumptions concerning limits of thermal movement, soil pressure, and pile design vary considerably among responding agencies. These decisions are based largely on past experience. Validity of these assumptions needs investigation by testing and analysis to ensure efficient and reliable design.     

"Disruption of contextual freezing, but not contextual blocking of fear-potentiated startle, after lesions of the dorsal hippocampus": Correction to McNish et al (2000).

Reports an error in "Disruption of contextual freezing, but not contextual blocking of fear-potentiated startle, after lesions of the dorsal hippocampus" by Kenneth A. McNish, Jonathan C. Gewirtz and Michael Davis (Behavioral Neuroscience, 2000[Feb], Vol 114[1], 64-76). The captions for Figure 4 (p. 70) and Figure 5 (p. 72) were printed incorrectly. The caption used for Figure 4 should appear under Figure 5, and the caption used for Figure 5 should appear under Figure 4. (The following abstract of the original article appeared in record 2000-13470-005.) The role of the dorsal hippocampus in contextual fear conditioning was investigated with a contextual blocking paradigm. In Experiment 1, rats were given pairings of a light conditioned stimulus (CS) and footshock after preexposure either to footshock or to the context alone. The group preexposed to footshock showed poorer fear conditioning to the light CS, as measured by the fear-potentiated startle reflex. In Experiment 2, a group preexposed to footshock in the same context showed poorer fear conditioning to the light CS than did a group preexposed to footshock in a different context, indicating contextual blocking of fear-potentiated startle. In Experiment 3, lesions of the dorsal hippocampus had no effect on contextual blocking, even though contextual freezing was disrupted. The sparing of contextual blocking indicated that contextual memory was intact following hippocampal lesions, despite the disruption of contextual freezing. (PsycINFO Database Record (c) 2010 APA, all rights reserved)     

Ambulatory cardiovascular activity in Vietnam combat veterans with and without posttraumatic stress disorder.

The present study investigated the relationship between daily diary affect ratings and ambulatory cardiovascular activity in 117 male Vietnam combat veterans (61 with posttraumatic stress disorder [PTSD] and 56 without PTSD). Participants completed 12–14 hr of ambulatory monitoring and daily diary affect ratings. Compared with veterans without PTSD, veterans with PTSD reported higher negative affect and lower positive affect in daily diary ratings. No differences were detected for mean laboratory initial recordings or mean ambulatory heart rate (HR), systolic blood pressure (SBP), or diastolic blood pressure (DBP). However, compared with veterans without PTSD, veterans with PTSD demonstrated higher SBP and DBP variability and a higher proportion of HR activity (compared with initial recording values) during daily activity. There was a significant Time of Day × Group interaction for mean HR, with a trend for PTSD participants to maintain HR levels during evening hours. (PsycINFO Database Record (c) 2010 APA, all rights reserved)     

The effect of magnesium additions on the microstructure and cut edge corrosion resistance of zinc aluminium alloy galvanised steel

The magnesium levels in 20 μm thick 4.5% Al/Zn galvanising coatings applied to 0.7 mm gauge steel under continuous galvanising conditions were altered from 0.0% to 0.05%. The additions result in an increase in the zinc dendrites (volume fraction from 6% to 22% and number from 150 to 325 mm⁻²) since magnesium depresses the eutectic temperature increasing the freezing range. The microstructural modification results in increasing cut edge corrosion determined using a scanning vibrating electrode technique for 24 h exposure to 5% NaCl. The Mg additions result in an increase in zinc loss (from 80 to 185 μg), an increase in active anode numbers (from 600 to 1700 m⁻¹ cut edge) and an increase in the number of long lived anodes.     

Inhibition of Tumor‐Cell Invasion with Chlorotoxin‐Bound Superparamagnetic Nanoparticles

Nanoparticles have been investigated as drug delivery vehicles, contrast agents, and multifunctional devices for patient care. Current nanoparticle‐based therapeutic strategies for cancer treatment are mainly based on delivery of chemotherapeutic agents to induce apoptosis or DNA/siRNA to regulate oncogene expression. Here, a nanoparticle system that demonstrates an alternative approach to the treatment of cancers through the inhibition of cell invasion, while serving as a magnetic resonance and optical imaging contrast agent, is presented. The nanoparticle comprises an iron oxide nanoparticle core conjugated with an amine‐functionalized poly(ethylene glycol) silane and a small peptide, chlorotoxin (CTX), which enables the tumor cell‐specific binding of the nanoparticle. It is shown that the nanoparticle exhibits substantially enhanced cellular uptake and an invasion inhibition rate of ～98% compared to unbound CTX (～45%). Significantly, the investigation from flow cytometry analysis, transmission electron microscopy, and fluorescent imaging reveals that the CTX‐enabled nanoparticles deactivated the membrane‐bound matrix metalloproteinase 2 (MMP‐2) and induced increased internalization of lipid rafts that contain surface‐expressed MMP‐2 and volume‐regulating ion channels through receptor‐mediated endocytosis, leading to enhanced prohibitory effects. Since upregulation and activity of MMP‐2 have been observed in tumors of neuroectodermal origin, and in cancers of the breast, colon, skin, lung, prostate, ovaries, and a host of others, this nanoparticle system can be potentially used for non‐invasive diagnosis and treatment of a variety of cancer types.