Observation of hydrogen-deuterium exchange of ubiquitin by direct analysis of electrospray capillary-skimmer dissociation with Fourier transform ion cyclotron resonance mass spectrometry

The structure of ubiquitin, a small cytoplasmic protein with an extended beta-sheet and an alpha-helix surrounding a hydrophobic core, has been characterized by hydrogen-deuterium (H/D) exchange labeling in conjunction with successive analysis by capillary-skimmer dissociation with electrospray ionization-Fourier transform ion cyclotron resonance mass spectrometry (ESI-FTICR MS). The deuterium content of each fragment ion was investigated at different times, and the results indicate that the deuterium incorporation rate into the backbone amides of ubiquitin varied depending on the environment of the amide hydrogens. Amide hydrogens of the N-terminal beta-strand showed quite slow exchange while those of the 35-39 loop were exchanged within a short exposure time to deuterium oxide. It was also possible to evaluate the difference in hydrogen-bond stability. The present data are consistent with the structural features obtained by X-Ray and NMR analyses. Although some of the labeling information might be lost by the scrambling of amide protons during capillary-skimmer dissociation, the results demonstrate that the present method provides useful higher-order structural information for proteins.     

Dithiobissuccinimidyl propionate as an anchor for assembling peroxidases at electrodes surfaces and its application in a H2O2 biosensor

Exposure of gold surfaces to solutions of dithiobis N-succinimidyl propionate (DTSP) gives rise to the modification of the surface with N-succinimidyl-3-thiopropionate (NSTP) which can, in turn, react with amino groups allowing for the covalent immobilization of enzymes such as horseradish peroxidase (HRP). The coverage of NSTP has been estimated to be of the order of 1.3 x 10(-10) from the charge consumed during its reductive desorption. The binding reaction of HRP with NSTP modified gold surfaces has been studied with the quartz crystal microbalance, and the results suggest that the immobilization process involves two steps in which the first (faster) appears to correspond to the rapid incorporation of the enzyme whereas the second is likely due to the slow incorporation of additional enzyme and/or reorganization of the immobilized layer. Spectrophotometric and electrochemical assays indicate that the immobilized HRP retains its enzymatic activity after immobilization onto the DTSP modified gold surface. The amount of immobilized (and active) HRP was estimated from QCM and spectrophotometric measurements to be of the order of 1.5 x 10(-11) mol/cm2. A peroxide biosensor was developed making use of a gold surface modified with DTSP and HRP employing Os and Ru complexes of 1,10-phenanthroline 5,6-dione (phen-dione) of the type [M(phendione)x(L)3-x]+2 (where L = 1,10-phenanthroline or 2,2'-bipyridine, x = 1-3) as mediators with the quinone moieties being the active component. The efficiency of the mediators increased with increasing number of phendione ligands.     

Peer Reviewed: Understanding Reversed-Phase LC with solid-state NMR

NMR techniques offer a variety of tools for studying bonded-phase structure, surface chemistry and stability, and dynamic behavior.     

Hardware-based rendering of full-parallax synthetic holograms

We present a method for efficiently calculating the interference of complex-valued two-dimensional wave patterns that is useful during the generation of synthetic holograms. These patterns are represented as a special kind of images (textures), and the interference is calculated in a computer graphics rendering process. This enables us to leverage hardware support for holographic imaging that is implemented in many state-of-the-art computer workstations. Using this approach, we gain a speedup of a factor of 60-90 compared with conventional calculation methods for interfering wave patterns. Our method is evaluated numerically, examples are shown, and the program code is outlined.     

Silicon planar-apertured probe array for high-density near-field optical storage

We propose a novel, to our knowledge, silicon planar-apertured probe array as an optical head for high-density near-field optical storage. In comparison with a conventional fiber probe employed for near-field optical storage the apertured probe array has a higher readout data-transmission rate and better mechanical durability. A probe array with an aperture size of 100 nm was fabricated by use of photolithography and wet etching of a silicon wafer. Subwavelength-readout capability was demonstrated by use of one aperture of the probe array. Furthermore, we achieved a 16 times increase in the light-transmission efficiency of the probe array by installing glass-sphere microlenses on each aperture. The increase was confirmed by measurement of the near-field optical intensity.     

Development and evaluation of the interferometric monitor for greenhouse gases: a high-throughput fourier-transform infrared radiometer for nadir earth observation

The interferometric monitor for greenhouse gases (IMG) was the precursor of the high-resolution Fourier-transform infrared radiometer (FTIR) onboard a satellite for observation of the Earth. The IMG endured the stress of a rocket launch, demonstrating that the high-resolution, high-throughput spectrometer is indeed feasible for use onboard a satellite. The IMG adopted a newly developed lubricant-free magnetic suspension mechanism and a dynamic alignment system for the moving mirror with a maximum traveling distance of 10 cm. We present the instrumentation of the IMG, characteristics of the movable mirror drive system, and the evaluation results of sensor specifications during space operation.     

Discrete correlation processor as a building core of a digital optical computing system: architecture and optoelectronic embodiment

In this paper we present a general-purpose discrete correlation processor (DCP) expected to be the building core block of a digital optical computing system. The DCP-1 is embodied by optoelectronic devices such as a VCSEL and a complementary metal-oxide silicon photodetector. The application targets of the DCP-1 are optical interconnection and various types of digital optical computing. It is expected that digital optical computing techniques coupled with the optoelectronic technology will provide large capability and flexibility in information processing. Introduction of a processing scheme of optical array logic enlarges the applicable field of the DCP-1 as well as its processing capability. With the experimental DCP-1 a bit error rate smaller than 10(-9) was obtained for A . B? operation under a 500-kHz clock rate.     

Optimum design of a grazing-incidence flat-field spectrograph with a spherical varied-line-space grating

A grazing-incidence spectrograph is designed by use of the flat-field image-focusing property of a spherical varied-line-space grating. Optimum grating parameters for mechanical ruling are selected by application of genetic algorithms. Two gratings, one for 2-5-nm and the other for 5-20-nm spectral regions, are designed, and their fabrication tolerances are analyzed.     

Development and comparison of models for light-pulse transport through scattering-absorbing media

We examine the transport of short light pulses through scattering-absorbing media through different approximate mathematical models. It is demonstrated that the predicted optical signal characteristics are significantly influenced by the various models considered, such as P(N) expansion, two-flux, and discrete ordinates. The effective propagation speed of the scattered radiation, the predicted magnitudes of the transmitted and backscattered fluxes, and the temporal shape and spread of the optical signals are functions of the models used to represent the intensity distributions. A computationally intensive direct numerical integration scheme that does not utilize approximations is also implemented for comparison. Results of some of the models asymptotically approach those of direct numerical simulation if the order of approximation is increased. In this study therefore we identify the importance of model selection in analyzing short-pulse laser applications such as optical tomography and remote sensing and highlight the parameters, such as wave speed, that must be examined before a model is adopted for analysis.     

All-optical switching in a distributed-feedback GaInAsP waveguide

The characteristics of all-optical switching in a waveguide device with a distributed-feedback structure were experimentally investigated. The device was composed of a strip-loaded GaInAsP/InP waveguide and a distributed-feedback structure, which was fabricated by a combination of reactive-ion etching and electron-beam exposure. In the experiments, several optical switching operations were demonstrated. In particular, the all-optical set-reset operation and threshold operation were obtained.