MiR-10a in Pancreatic Juice as a Biomarker for Invasive Intraductal Papillary Mucinous Neoplasm by miRNA Sequencing

New biomarkers are needed to further stratify the risk of malignancy in intraductal papillary mucinous neoplasm (IPMN). Although microRNAs (miRNAs) are expected to be stable biomarkers, they can vary owing to a lack of definite internal controls. To identify universal biomarkers for invasive IPMN, we performed miRNA sequencing using tumor-normal paired samples. A total of 19 resected tissues and 13 pancreatic juice samples from 32 IPMN patients were analyzed for miRNA expression by next-generation sequencing with a two-step normalization of miRNA sequence data. The miRNAs involved in IPMN associated with invasive carcinoma were identified from this tissue analysis and further verified with the pancreatic juice samples. From the tumor-normal paired tissue analysis of the expression levels of 2792 miRNAs, 20 upregulated and 17 downregulated miRNAs were identified. In IPMN associated with invasive carcinoma (INV), miR-10a-5p and miR-221-3p were upregulated and miR-148a-3p was downregulated when compared with noninvasive IPMN. When these findings were further validated with pancreatic juice samples, miR-10a-5p was found to be elevated in INV (p = 0.002). Therefore, three differentially expressed miRNAs were identified in tissues with INV, and the expression of miR-10a-5p was also elevated in pancreatic juice samples with INV. MiR-10a-5p is a promising additional biomarker for invasive IPMN.     

Identification of SYS1 as a Host Factor Required for Shiga Toxin-Mediated Cytotoxicity in Vero Cells

Shiga toxin (STx) or Vero toxin is a virulence factor produced by enterohemorrhagic Escherichia coli. The toxin binds to the glycosphingolipid globotriaosylceramide (Gb3) for its entry, and causes cell death by inhibiting ribosome function. Previously, we performed a loss-of-function screen in HeLa cells using a human CRISPR knockout (KO) library and identified various host genes required for STx-induced cell death. To determine whether this library targeted to the human genome is applicable to non-human primate cells and to identify previously unrecognized factors crucial for STx-induced cell death, we herein performed a similar screen in the African green monkey kidney-derived Vero C1008 subline. Many genes relevant to metabolic enzymes and membrane trafficking were enriched, although the number of enriched genes was less than that obtained in the screening for HeLa cells. Of note, several genes that had not been enriched in the previous screening were enriched: one of these genes was SYS1, which encodes a multi-spanning membrane protein in the Golgi apparatus. In SYS1 KO Vero cells, expression of Gb3 and sphingomyelin was decreased, while that of glucosylceramide and lactosylceramide was increased. In addition, loss of SYS1 inhibited the biosynthesis of protein glycans, deformed the Golgi apparatus, and perturbed the localization of trans-Golgi network protein (TGN) 46. These results indicate that the human CRISPR KO library is applicable to Vero cell lines, and SYS1 has a widespread effect on glycan biosynthesis via regulation of intra-Golgi and endosome–TGN retrograde transports.     

Effects of support and additive on oxidation state and activity of Pt catalyst in propane combustion

The effects of support and additive on the oxidation state and catalytic activity of Pt catalyst in the low temperature propane combustion were systematically investigated on Pt/MgO, Pt/Al₂O₃ and Pt/SiO₂–Al₂O₃. The catalytic activity varied much with both support materials and additives. The catalyst on the more acidic support showed higher activity, and the catalytic activity on every support materials increased as the electronegativity of additives increased, while some additives decreased the activity. The oxidation state of platinum, estimated by white line intensity of Pt L_III-edge XANES spectrum, also varied with the support and additives, and additives with higher electronegativity greatly prevented the platinum from its oxidation under oxidising atmosphere. Among almost all the catalysts with various supports and various additives, a clear relationship was observed between the oxidation state of platinum and the catalytic activity; the more metallic platinum showed higher activity. Thus, it was concluded that the total electrophilic/electrophobic property derived from those of the support and additive controls the oxidation state of platinum, which intensively affects the catalytic activity; i.e. higher electrophilic property provides less oxidised platinum, resulting in high catalytic activity. The mechanism of this effect was also discussed on the basis of thermochemical data, and it was proposed that the electrophobic materials promote the noble metal oxidation since the noble metal oxo-anion such as PtO^δ− is more stabilised with electrophobic cation.     

Synthesis of poly(α-thiophenediyl)benzylidene with high molecular weight and its thermal stability

Summary The synthesis of poly(-thiophenediyl)benzylidene (PTB) with high molecular weight is described. Number-average degrees of polymerization reached about 74. The characterizations of the polymer was investigated by ¹H-NMR, ¹³C-NMR, IR, and UV-VIS spectra. The polymer with well-defined structure and high molecular weight was obtained by polymerization at low temperature and in polar solvent. This polymer was thermally stable and a thermal decomposition took place at 391°C under nitrogen and at 370°C under air. The glass transformation temperature was 117°C and this PTB was nonfusible.     

Surface active N-acylglutamate: I. Preparation of long chain N-acylglutamic acid

Long chain N-acylglutamic acid was prepared in a high yield by a reaction of glutamic acid with fatty acid chloride in a mixed solvent of water and a water miscible organic solvent such as acetone, methyl ethyl ketone, dioxane, tetrahydrofuran,t-butyl alcohol or cyclohexanone. In this reaction the composition of the mixed solvent influenced the yield of N-acylated glutamic acid and the best yield was obtained when the reaction was carried out in the mixed solvent comprising 30–60% v/v of the organic solvent. Long chain N-acylaspartic acid was also obtained in a high yield by the same method. As the other method to obtain N-lauroyl-D L-glutamic acid, it was examined that N-acyl-α-aminoglutarodinitrile which was obtained by a reaction of α-aminoglutarodinitrile with fatty acid chloride was hydrolyzed with an aqueous alkaline solution. The salts of long chain N-acylglutamic acid are known as the surface active agents that react mildly on the human skin.     

Microstructure of carbon spherules

Carbon spherules were formed from a mixture of polyethylene with 5–10 wt% Polyvinylchloride under pressure of 30 MPa. The spherules were embedded in a resin and thin-sectioned with a diamond knife. Alignment of small aromatic layers in the spherules was studied by transmission electron microscopy using dark-field image and microdiffraction techniques. Based on the obtained dark-field images at various positions of the aperture on the 002 diffraction ring, a structural model for the as-prepared spherules has been proposed. In this model small aromatic layers are assumed to align approximately on circular conical surfaces with a common vertex in the spherule at or near the center of the spherule. The proposed model is supported by an electron microdiffraction study of various micro-areas of sections of the spherules. The model is also consistent with the deformation of spherules into thick disks and formation of a definite system of cracks in heat-treatment to 2800°C as revealed by scanning electron microscopy.     

PTCR Characteristics in Barium Titanate Ceramics with Curie Points Between 60° and 360°C

PTCR characteristics in porous semiconducting barium titanate ceramics with Curie points from 60° to 360°C were investigated. The magnitude of the PTCR effect in these cerumics decreases self-onsistently with increasing Curie point within this temperature range. A PTCR efSect of more than 4 orders of magnitude was ahserved, for a Ba_0.44Pb_0.6TiO₃ ceramic with a Curie point of 360°C .     

Domain Adaptation for Structured Regression

Discriminative regression models have proved effective for many vision applications (here we focus on 3D full-body and head pose estimation from image and depth data). However, dataset bias is common and is able to significantly degrade the performance of a trained model on target test sets. As we show, covariate shift, a form of unsupervised domain adaptation (USDA), can be used to address certain biases in this setting, but is unable to deal with more severe structural biases in the data. We propose an effective and efficient semi-supervised domain adaptation (SSDA) approach for addressing such more severe biases in the data. Proposed SSDA is a generalization of USDA, that is able to effectively leverage labeled data in the target domain when available. Our method amounts to projecting input features into a higher dimensional space (by construction well suited for domain adaptation) and estimating weights for the training samples based on the ratio of test and train marginals in that space. The resulting augmented weighted samples can then be used to learn a model of choice, alleviating the problems of bias in the data; as an example, we introduce SSDA twin Gaussian process regression (SSDA-TGP) model. With this model we also address the issue of data sharing, where we are able to leverage samples from certain activities (e.g., walking, jogging) to improve predictive performance on very different activities (e.g., boxing). In addition, we analyze the relationship between domain similarity and effectiveness of proposed USDA versus SSDA methods. Moreover, we propose a computationally efficient alternative to TGP (Bo and Sminchisescu 2010), and it’s variants, called the direct TGP. We show that our model outperforms a number of baselines, on two public datasets: HumanEva and ETH Face Pose Range Image Dataset. We can also achieve 8–15 times speedup in computation time, over the traditional formulation of TGP, using the proposed direct formulation, with little to no loss in performance.