Prevalence of serologic markers of HBV, HDV, HCV and HIV in non-injection drug users compared to injection drug users in Gran Canaria, Spain

Von Hippel-Lindau disease (VHL) is an autosomal dominant tumour syndrome caused by germline mutations of the VHL tumour suppressor gene located on chromosome 3p25-26. In VHL tumours may occur in 14 different target organs, including the eye. Retinal angiomas are considered the first manifestation of VHL disease in 43% of cases, and the cumulative probability of developing a retinal angioma in one or both eyes rises during each decade of life, reaching 80% for patients over 80 years old. Since 1976 patients with VHL at the University Hospital of Utrecht and their at-risk relatives have been screened periodically by a multidisciplinary team. Long-term follow-up ophthalmological data were analysed with special attention to natural course and results of treatment. In addition, we looked for a genotype-phenotype correlation. Retinal angiomas were found in all families. In one large family with a missense mutation (V170D) of the VHL gene, in which the complete spectrum of visceral- and central nervous system (CNS) features of VHL is present, macular, parapapillary, optic disc and ora serrata angiomas were also found. In general, however, a clear-cut genotype-phenotype correlation could not be found. Only early detection and treatment of peripheral retinal angiomas can be expected to decrease the percentage of patients with decreased visual acuity. Therefore, early detection and treatment of these tumours is of paramount importance. Ophthalmological screening of patients and persons at risk should start as early as possible. In patients with apparently sporadic retinal angiomas it is advisable to perform germline DNA analysis, since the risk of developing VHL is high, especially if the angiomas are bilateral, or unilateral and multifocal, if the patient is young, or if there is a family history suggestive of VHL.     

Parenteral nutrition in oncologic patients]

A B16 melanoma-specific CD8+ T cell line (AB1) was established from the spleen cells of C57BL/6 mice cured of B16 melanoma with interleukin (IL)-12 treatment. The AB1 line exclusively used T cell receptor Vbeta11. The AB1 cells exhibited a cytolytic activity against both syngeneic B16 melanoma and allogeneic P815 mastocytoma, whereas a cold inhibition assay revealed specificity of the AB1 cells against B16 melanoma. Their lostability to kill a class I loss variant of B16 melanoma was restored by the transfection of H-2Kb gene. In addition, their interferon (IFN)-gamma production was significantly suppressed by the addition of anti-H-2Kb monoclonal antibody, and RT-PCR analysis showed that the AB1 line expressed the mRNA encoding IFN-gamma, but not IL-4 or IL-10. The experiment using synthetic peptides of tyrosinase-related protein-2 (TRP-2) revealed that the AB1 cells could recognize TRP-2(181-188) peptide. Moreover, the AB1 cells showed an in vivo antitumor effect against established pulmonary metastases of B16 melanoma. Overall, these results indicate that the Tc1-type Vbeta11+ AB1 cells exert an antitumor activity against syngeneic B16 melanoma through recognition of TRP-2(181-188) peptide in an H-2Kb-restricted manner.     

Failure pressure evaluation of the containment building of a large dry nuclear power plant

The evaluation of the failure pressure of the containment building of a large dry PWR-W three loops nuclear power plant, based on computer numerical simulation, is described in this paper. The proposed method considers fully three-dimensional finite element models in order to take into account the effect of the most significant structural characteristics (presence of three buttresses, penetrations, additional reinforcement around the penetrations, etc.), the lack of symmetry of the forces generated by the prestressing system, as well as the nonlinear behaviour of the materials and the sensitivity of the results to uncertainties associated with several parameters. The computational model is completely described, including the constitutive equations for the concrete, the reinforcing steel and prestressing tendons, the spatial discretization—isoparametric elements including the reinforcement are used. The structural models and the analyses performed for their calibration are also described. The influence on the failure pressure of incorporating the foundation slab in the structural model, and the influence of the thermal effects, are discussed. One of the conclusions of the numerical study is that the failure process can be appropriately simulated by means of a structural model which does not include either the foundation slab or the thermal effects. Finally, results of a probabilistic simulation of the failure pressure are given.     

Microplastic and other anthropogenic microparticles in water and sediments of Lake Simcoe

Microplastics (plastic particles <5 mm in size) have been reported in ecosystems worldwide and have been shown to cause adverse negative impacts on organisms. This study provides the first report of microplastics and other anthropogenic microparticles in the surface waters and sediments of Lake Simcoe in Ontario, Canada, a popular recreational and fishing lake. Surface waters (low volume grabs and manta trawls) and sediments were sampled from eight sites to determine microparticle abundances and character (size, morphology, material identity). Concentrations ranged from 0 to 0.7 particles/L in surface water grab samples, 0.4–1.3 particles/m³ in manta trawl samples, and 8.3–1070 particles/kg in sediment samples. Spectroscopic analysis confirmed that 72% of particles were anthropogenic, with 64% unambiguously identified as microplastics. However, confirmed microplastic concentrations were approximately 6–7 times lower than unadjusted counts in sediments, demonstrating the importance of verifying and adjusting reported values. Fibers were only quantified and characterized in surface water grab samples and sediments, and were the most common morphology, accounting for 82% and 89% of anthropogenic particles, respectively. Fragments were most common in manta trawl samples (75%, excluding fibers) and consisted predominantly of polyethylene (41%) and polypropylene (22%). The influence of proximity to urban centers and prevailing winds on the distribution of microplastics was apparent in surface water manta trawls. Microplastics and other anthropogenic microparticles are present in Lake Simcoe but at lower abundances than at locations impacted by larger population centers in other large freshwater lakes such as Lakes Ontario and Erie of the Great Lakes.     

Facilitating the learning process in parallel computing by using instant messaging

Parallel Programming skills may require a long time to acquire. “Think in parallel” is a skill that requires time, effort, and experience. In this work, we propose to facilitate the students’ learning process in parallel programming by using instant messaging. Our aim was to find out whether students’ interaction through instant messaging tools is beneficial for the learning process. In order to do so, we asked several students of an HPC course of the Master’s degree in Computer Science of the University of León to develop a specific parallel application, each of them using a different application program interface: OpenMP, MPI, CUDA, or OpenCL. Even though the used APIs are different, there are common points in the design process. We encouraged students to interact with each other by using Gitter, an instant messaging tool for GitHub users. Our analysis of the communications and results demonstrate that the direct interaction of students through the Gitter tool has a positive impact on the learning process.

     

Deploying deep learning approaches to left ventricular non-compaction measurement

The Journal of Supercomputing - Left ventricular non-compaction (LVNC) is a rare cardiomyopathy characterized by abnormal trabeculations in the left ventricle cavity. Although traditional computer...     

Integrating supercomputing clusters into education: a case study in biotechnology

The Journal of Supercomputing - The integration of a Supercomputer in the educational process improves student’s technological skills. The aim of the paper is to study the interaction between...     

A neuron membrane mesh representation for visualization of electrophysiological simulations

We present a process to automatically generate three-dimensional mesh representations of the complex, arborized cell membrane surface of cortical neurons (the principal information processing cells of the brain) from nonuniform morphological measurements. Starting from manually sampled morphological points (3D points and diameters) from neurons in a brain slice preparation, we construct a polygonal mesh representation that realistically represents the continuous membrane surface, closely matching the original experimental data. A mapping between the original morphological points and the newly generated mesh enables simulations of electrophysiolgical activity to be visualized on this new membrane representation. We compare the new mesh representation with the state of the art and present a series of use cases and applications of this technique to visualize simulations of single neurons and networks of multiple neurons.     

Run-time generation of partial FPGA configurations

This paper presents and evaluates a method of generating partial bitstreams at run-time for dynamic reconfiguration of sections of an FPGA. The method is intended for use in adaptive embedded systems that employ run-time reconfiguration to achieve high flexibility and performance. The proposed approach combines partial bitstreams of coarse-grained components to produce a new partial bitstream implementing a given circuit netlist. Topological sorting of the netlist is used to determine the initial positions of individual components, whose placement is then improved by simulated annealing. Connection routing is done by a breadth-first search of the reconfigurable area based on a simplified resource model of the reconfigurable fabric. The desired partial bitstream is constructed by merging together the default bitstream of the reconfigurable area, the relocated partial bitstreams of the components, and the configurations of the switch matrices used for routing. The approach is embodied in a code library that applications can use to create new bitstreams at run-time. For the members of a set of 29 benchmarks (both synthetic and application-derived) having between five and 41 components, the complete process of bitstream generation takes between 8 s and 35 s when running on an embedded PowerPC 405 microprocessor clocked at 300 MHz.