Analysis of Integrin αIIb Subunit Dynamics Reveals Long-Range Effects of Missense Mutations on Calf Domains

Integrin α_IIbβ₃, a glycoprotein complex expressed at the platelet surface, is involved in platelet aggregation and contributes to primary haemostasis. Several integrin α_IIbβ₃ polymorphisms prevent the aggregation that causes haemorrhagic syndromes, such as Glanzmann thrombasthenia (GT). Access to 3D structure allows understanding the structural effects of polymorphisms related to GT. In a previous analysis using Molecular Dynamics (MD) simulations of α_IIb Calf-1 domain structure, it was observed that GT associated with single amino acid variation affects distant loops, but not the mutated position. In this study, experiments are extended to Calf-1, Thigh, and Calf-2 domains. Two loops in Calf-2 are unstructured and therefore are modelled expertly using biophysical restraints. Surprisingly, MD revealed the presence of rigid zones in these loops. Detailed analysis with structural alphabet, the Proteins Blocks (PBs), allowed observing local changes in highly flexible regions. The variant P741R located at C-terminal of Calf-1 revealed that the Calf-2 presence did not affect the results obtained with isolated Calf-1 domain. Simulations for Calf-1 + Calf-2, and Thigh + Calf-1 variant systems are designed to comprehend the impact of five single amino acid variations in these domains. Distant conformational changes are observed, thus highlighting the potential role of allostery in the structural basis of GT.     

Cell-Based Chemical Safety Assessment and Therapeutic Discovery Using Array-Based Sensors

Synthetic chemicals are widely used in food, agriculture, and medicine, making chemical safety assessments necessary for environmental exposure. In addition, the rapid determination of chemical drug efficacy and safety is a key step in therapeutic discoveries. Cell-based screening methods are non-invasive as compared with animal studies. Cellular phenotypic changes can also provide more sensitive indicators of chemical effects than conventional cell viability. Array-based cell sensors can be engineered to maximize sensitivity to changes in cell phenotypes, lowering the threshold for detecting cellular responses under external stimuli. Overall, array-based sensing can provide a robust strategy for both cell-based chemical risk assessments and therapeutics discovery.     

Determination of Glyphosate and Its Metabolite AMPA (Aminomethylphosphonic Acid) in Cereals After Derivatization by Isotope Dilution and UPLC-MS/MS”

A straightforward analytical method has been developed for the determination of glyphosate and aminomethylphosphonic acid (AMPA), its major metabolite in cereals. This method entails a rapid extraction and derivatization with 9-fluorenylmethyl chloroformate followed by separation with a conventional reversed-phase rapid chromatography used in daily routine analysis and detection by electrospray ionization tandem mass spectrometry. To overcome matrix effects and compensate for any analyte losses during sample treatment, an isotopic dilution approach was used. Since 2010, the monitoring of cereals for the widely used herbicide glyphosate is obligatory to all European Union (EU)-member states, laid down in Commission Regulation (EC) No. 1213/2008. Hence, there is definitively a need for a reliable and easy-to-handle analytical method for monitoring of this compound. The proposed method can be run without having to make time-consuming changes on the equipment used for daily routine analysis. The analytical performance of the method was evaluated according to SANCO/10684/2009 criteria and demonstrated that this method is rugged and cost-effective, therefore suitable for monitoring purposes as well as legislative enforcements within the EU. The apparent recoveries of both analytes were between 97% and 113% with relative standard deviations less than 20%. The limits of quantification of glyphosate and AMPA were 0.02 mg/kg in cereal matrices. Finally, the accuracy of the method was assessed by analyzing a proficiency test material which was available from a previous round (EUPT-C4).     

Disrupting the methionine biosynthetic pathway in Candida guilliermondii: characterization of the MET2 gene as counter‐selectable marker

Candida guilliermondii (teleomorph Meyerozyma guilliermondii) is an ascomycetous species belonging to the fungal CTG clade. This yeast remains actively studied as a result of its moderate clinical importance and most of all for its potential uses in biotechnology. The aim of the present study was to establish a convenient transformation system for C. guilliermondii by developing both a methionine auxotroph recipient strain and a functional MET gene as selection marker. We first disrupted the MET2 and MET15 genes encoding homoserine‐O‐acetyltransferase and O‐acetylserine O‐acetylhomoserine sulphydrylase, respectively. The met2 mutant was shown to be a methionine auxotroph in contrast to met15 which was not. Interestingly, met2 and met15 mutants formed brown colonies when cultured on lead‐containing medium, contrary to the wild‐type strain, which develop as white colonies on this medium. The MET2 wild‐type allele was successfully used to transfer a yellow fluorescent protein (YFP) gene‐expressing vector into the met2 recipient strain. In addition, we showed that the loss of the MET2‐containing YFP‐expressing plasmid can be easily observed on lead‐containing medium. The MET2 wild‐type allele, flanked by two short repeated sequences, was then used to disrupt the LYS2 gene (encoding the α‐aminoadipate reductase) in the C. guilliermondii met2 recipient strain. The resulting lys2 mutants displayed, as expected, auxotrophy for lysine. Unfortunately, all our attempts to pop‐out the MET2 marker (following the recombination of the bordering repeat sequences) from a target lys2 locus were unsuccessful using white/brown colony colour screening. Nevertheless, this MET2 transformation/disruption system represents a new versatile genetic tool for C. guilliermondii. Copyright © 2014 John Wiley & Sons, Ltd.     

Improved district heating network operation by the integration of high-temperature heat pumps

Biomass combined heat and power (CHP) plants connected to district heating networks are a very good opportunity to increase the share of renewable sources into energy systems. Frequently, important consumers are connected to ensure a stable base heat demand throughout the year but they often have higher requirements in terms of temperature (i.e. steam), which involves a high level of temperature in the district heating network during the whole year and high levels of heat losses in the network. This contribution presents the possibility to decrease the level of temperature at which the district heating network operates and to use high-temperature heat pumps connected locally at the consumption point to produce steam when it is required. An investigation of the global design and integration through thermodynamic simulation models is realised for the University of Liège district heating network. This study is intended to determine the heat pump coefficient of performance and, therefore, to assess the balance between the savings in terms of heat losses and the additional heat pump electricity consumption.     

Towards a modelling of RPV steel brittle fracture using crystal plasticity computations on polycrystalline aggregates

In the frame of the multi-scale approach of the fracture toughness prediction defined in the PERFECT project, we proposed a new crystal plasticity model and applied it to the computation of stress heterogeneities within a reference polycrystalline aggregate defined in the project RPV material.The proposed crystal plasticity model is able to take into account the effects of temperature and irradiation hardening. The analysis of the results of aggregate computations shows that the distributions of the maximum values of the maximal principal stresses are found to be well described by a Gumbell function. Applying these distributions on a Griffith criterion allows settling the basis of an original fracture criterion. However the increasing resistance to fracture of the steel with temperature can be reproduced only by introducing a temperature dependence of the fracture energy.     

Experimental investigation in the TOSQAN facility of heat and mass transfers in a spray for containment application

TOSQAN is an experimental program undertaken by the Institut de Radioprotection et de Sûreté Nucléaire (IRSN) in order to perform thermal hydraulic containment studies. The TOSQAN facility is a large enclosure devoted to simulate typical accidental thermal hydraulic flow conditions in nuclear-pressurized water reactor (PWR) containment. The TOSQAN facility which is highly instrumented with non-intrusive optical diagnostics is particularly adapted to nuclear safety CFD code validation. The present work is devoted to studying the interaction of a water spray injection used as a mitigation means in order to reduce the gas pressure and temperature in the containment, to produce gases mixing and washout of fission products. In order to have a better understanding of heat and mass transfers between spray droplets and the gas mixture, and to analyze mixing effects due to spray activation, we perform detailed characterization of the two-phase flow.     

Investigation of hybrid‐capacitor properties of ruthenium complexes

Ru complexes were successfully produced, and their structural properties were investigated using FTIR, Raman, and single crystal XRD patterns. The HOMO, LUMO, Eg, and electronic surface potential (ESP) values of the molecules were calculated by a Gaussian program. The complexes were used for producing hybrid capacitor cells as electrode materials. According to electrochemical analysis, complex 2 showed the best CV graph between ?1 V and +1 V and had the highest current value and hysteresis area when compared with the other complexes. The performance analysis and the capacity fade of the cells were investigated. The first capacity values of the complexes were 57.5, 22.1, 16.9, and 0.0021 F/g for complexes 1 , 2 , 3 , and 4 , respectively. The capacitive mechanism of the cells as relates to molecular interactions was also investigated. We suggested that the ESP values of the molecules were directly related to the capacitive performance of the cells. In addition to this, the best cycling performance was obtained for complex 2, which has the lowest Eg value among the complexes. We speculate that the charged regions on the complex materials have a crucial role in the increasing the capacitance of the cells.