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41.
Computational models of protein folding and ligand docking are large and complex. Few systematic methods have yet been developed to optimize the parameters in such models. We describe here an iterative parameter optimization strategy that is based on minimizing a structural error measure by descent in parameter space. At the start, we know the ‘correct’ native structure that we want the model to produce, and an initial set of parameters representing the relative strengths of interactions between the amino acids. The parameters are changed systematically until the model native structure converges as closely as possible to the correct native structure. As a test, we apply this parameter optimization method to the recently developed Gaussian model of protein folding: each amino acid is represented as a bead and all bonds, covalent and noncovalent, are represented by Hooke's law springs. We show that even though the Gaussian model has continuous degrees of freedom, parameters can be chosen to cause its ground state to be identical to that of Go-type lattice models, for which the global ground states are known. Parameters for a more realistic protein model can also be obtained to produce structures close to the real native structures in the protein database. 相似文献
42.
A method for evaluating fault coverage using simulated fault injection for digitalized systems in nuclear power plants 总被引:1,自引:0,他引:1
Suk Joon Kim Poong Hyun Seong Jun Seok Lee Man Cheol Kim Hyun Gook Kang Seung Cheol Jang 《Reliability Engineering & System Safety》2006,91(5):614-623
The fault coverage for digital system in nuclear power plants is evaluated using a simulated fault injection method. Digital systems have numerous advantages, such as hardware elements share and hardware replication of the needed number of independent channels. However, the application of digital systems to safety-critical systems in nuclear power plants has been limited due to reliability concerns. In the reliability issues, fault coverage is one of the most important factors. In this study, we propose an evaluation method of the fault coverage for safety-critical digital systems in nuclear power plants. The system under assessment is a local coincidence logic processor for a digital plant protection system at Ulchin nuclear power plant units 5 and 6. The assessed system is simplified and then a simulated fault injection method is applied to evaluate the fault coverage of two fault detection mechanisms. From the simulated fault injection experiment, the fault detection coverage of the watchdog timer is 44.2% and that of the read only memory (ROM) checksum is 50.5%. Our experiments show that the fault coverage of a safety-critical digital system is effectively quantified using the simulated fault injection method. 相似文献
43.
Seok Hwan Yoon 《Thin solid films》2006,515(4):1544-1547
Highly polycrystalline copper indium diselenide (CuInSe2) thin films on molybdenum substrate were successfully grown at 330 °C through two-stage metal organic chemical vapor deposition (MOCVD) method by using two precursors at relatively mild conditions. First, phase pure InSe thin film was prepared on molybdenum substrate by using a single-source precursor, di-μ-methylselenobis(dimethylindium). Second, on this InSe/Mo film, bis(ethylisobutyrylacetato) copper(II) designated as Cu(eiac)2 was treated by MOCVD to produce CuInSe2 films. The thickness and stoichiometry of the product films were found to be easily controlled in this method by adjusting the process conditions. Also, there were no appreciable amounts of carbon and oxygen impurities in the prepared copper indium diselenide films. 相似文献
44.
Sung Tae Choi Ki Seok Yang Nishi S. Shimizu S. Tokuda K. Yong Hoon Kim 《Microwave Theory and Techniques》2006,54(5):1953-1960
A 60-GHz point-to-multipoint wireless access link with data rate of 156 Mb/s incorporating 60-GHz transceiver modules and full-duplex fiber-optic millimeter-wave transmission is developed for short-range applications such as indoor wireless local area networks and intelligent transport systems. For compact system configuration, a small-size millimeter-wave transceiver module with planar antennas is developed. The transceiver module is based on broadband planar integration and packaging of millimeter-wave circuits. The RF output power is +10 dBm and the measured 3-dB antenna beamwidth is 30/spl deg/. The total size of the developed 60-GHz transceiver module, except input and output connectors, is 50 mm /spl times/ 75 mm /spl times/ 35 mm. A point-to-point full duplex fiber-optic configuration is extended to the scheme with multiple access points (APs) by using a tree coupler and a dense wavelength division multiplexing multiplexer. The AP has a simple configuration without frequency conversion. The bit error rate and packet error rate performances of the 60-GHz fiber-radio access link are evaluated. Furthermore, the effect of the extension to the scheme with multiple APs is investigated. 相似文献
45.
Hot band annealing is known to be a prerequisite for good magnetic properties irrespective of manufacturing methods in grain‐oriented Fe‐3 wt.% Si electrical steels. In this study, the effects of hot band annealing on magnetic properties were investigated in 3% grain‐oriented electrical steels of low soluble AI contents and one‐stage cold rolling. Microstructure and precipitate distribution were compared with hot band annealing conditions. Secondary recrystallization behaviour with hot band annealing condition was also discussed. 相似文献
46.
A fast path planning by path graph optimization 总被引:1,自引:0,他引:1
Joo Young Hwang Jun Song Kim Sang Seok Lim Kyu Ho Park 《IEEE transactions on systems, man, and cybernetics. Part A, Systems and humans : a publication of the IEEE Systems, Man, and Cybernetics Society》2003,33(1):121-129
A fast path planning method by optimization of a path graph for both efficiency and accuracy is proposed. A conventional quadtree-based path planning approach is simple, robust, and efficient. However, it has two limitations. We propose a path graph optimization technique employing a compact mesh representation. A world space is triangulated into a base mesh and the base mesh is simplified to a compact mesh. The compact mesh representation is object-dependent; the positions of vertexes of the mesh are optimized according to the curvatures of the obstacles. The compact mesh represents the obstacles as accurately as the quadtree even though using much fewer vertexes than the quadtree. The compact mesh distributes vertexes in a free space in a balanced way by ensuring that the lengths of edges are below an edge length threshold. An optimized path graph is extracted from the compact mesh. An iterative vertex pushing method is proposed to include important obstacle boundary edges in the path graph. Dijkstra's shortest path searching algorithm is used to search the shortest path in the path graph. Experimental results show that the path planning using the optimized path graph is an order of magnitude faster than the quadtree approach while the length of the path generated by the proposed method is almost the same as that of the path generated by the quadtree. 相似文献
47.
Hee Seok Song Jae Kyeong Kim Yeong Bin Cho Soung Hie Kim 《Artificial Intelligence Review》2004,21(2):161-184
Customer retention is an increasinglypressing issue in today's competitiveenvironment. This paper proposes a personalizeddefection detection and prevention procedurebased on the observation that potentialdefectors have a tendency to take a couple ofmonths or weeks to gradually change theirbehaviour (i.e., trim-out their usage volume)before their eventual withdrawal. For thispurpose, we suggest a SOM (Self-Organizing Map)based procedure to determine the possiblestates of customer behaviour from pastbehaviour data. Based on this staterepresentation, potential defectors aredetected by comparing their monitoredtrajectories of behaviour states with frequentand confident trajectories of past defectors.Also, the proposed procedure is extended toprevent the defection of potential defectors byrecommending the desirable behaviour state forthe next period so as to lower the likelihoodof defection. For the evaluation of theproposed procedure, a case study has beenconducted for a Korean online game site. Theresult demonstrates that the proposed procedureis effective for defection prevention andefficiently detects potential defectors withoutdeterioration of prediction accuracy whencompared to that of the MLP (Multi-LayerPerceptron) neural networks. 相似文献
48.
Seok Jin Lim Suk Jae Jeong Kyung Sup Kim Myon Woong Park 《The International Journal of Advanced Manufacturing Technology》2006,28(5-6):618-625
Today’s business environment is experiencing as a period of expansion and the globalization. Therefore, a distribution plan
with low cost and high customer satisfaction in supply chain management (SCM) has been widely investigated. The purpose of
this study is to establish optimal distribution planning in the supply chain. In this paper, a hybrid approach involving a
genetic algorithm (GA) and simulation is presented to solve this problem. The GA is employed in order to quickly generate
feasible distribution sequences. Considering uncertain factors such as queuing, breakdowns and repairing time in the supply
chain, the simulation is used to minimize completion time for the distribution plan. The computational results for an example
of a simple supply chain are given and discussed to validate the proposed approach. We obtained a more realistic distribution
plan with optimal completion time by performing the iterative hybrid GA simulation procedure which reflects the stochastic
nature of supply chains. 相似文献
49.
Hyung Seok Kim Chris Joslin Thomas Di Giacomo Stephane Garchery Nadia Magnenat-Thalmann 《The Visual computer》2006,22(5):332-345
The goal of this research was the creation of an adaptation mechanism for the delivery of three-dimensional content. The adaptation of content, for various network and terminal capabilities – as well as for different user preferences, is a key feature that needs to be investigated. Current state-of-the art research of the adaptation shows promising results for specific tasks and limited types of content, but is still not well-suited for massive heterogeneous environments. In this research, we present a method for transmitting adapted three-dimensional content to multiple target devices. This paper presents some theoretical and practical methods for adapting three-dimensional content, which includes shapes and animation. We also discuss practical details of the integration of our methods into MPEG-21 and MPEG-4 architectures. 相似文献
50.
Eun Sil Koh Soojeong Kim Mina Son Ji-Young Park Jaehyuk Pyo Wan-Young Kim Minyoung Kim Sungjin Chung Cheol Whee Park Ho-Shik Kim Seok Joon Shin 《International journal of molecular sciences》2022,23(22)
Renal fibrosis, the final pathway of chronic kidney disease, is caused by genetic and epigenetic mechanisms. Although DNA methylation has drawn attention as a developing mechanism of renal fibrosis, its contribution to renal fibrosis has not been clarified. To address this issue, the effect of zebularine, a DNA methyltransferase inhibitor, on renal inflammation and fibrosis in the murine unilateral ureteral obstruction (UUO) model was analyzed. Zebularine significantly attenuated renal tubulointerstitial fibrosis and inflammation. Zebularine decreased trichrome, α-smooth muscle actin, collagen IV, and transforming growth factor-β1 staining by 56.2%. 21.3%, 30.3%, and 29.9%, respectively, at 3 days, and by 54.6%, 41.9%, 45.9%, and 61.7%, respectively, at 7 days after UUO. Zebularine downregulated mRNA expression levels of matrix metalloproteinase (MMP)-2, MMP-9, fibronectin, and Snail1 by 48.6%. 71.4%, 31.8%, and 42.4%, respectively, at 7 days after UUO. Zebularine also suppressed the activation of nuclear factor-κB (NF-κB) and the expression of pro-inflammatory cytokines, including tumor necrosis factor-α, interleukin (IL)-1β, and IL-6, by 69.8%, 74.9%, and 69.6%, respectively, in obstructed kidneys. Furthermore, inhibiting DNA methyltransferase buttressed the nuclear expression of nuclear factor (erythroid-derived 2)-like factor 2, which upregulated downstream effectors such as catalase (1.838-fold increase at 7 days, p < 0.01), superoxide dismutase 1 (1.494-fold increase at 7 days, p < 0.05), and NAD(P)H: quinone oxidoreduate-1 (1.376-fold increase at 7 days, p < 0.05) in obstructed kidneys. Collectively, these findings suggest that inhibiting DNA methylation restores the disrupted balance between pro-inflammatory and anti-inflammatory pathways to alleviate renal inflammation and fibrosis. Therefore, these results highlight the possibility of DNA methyltransferases as therapeutic targets for treating renal inflammation and fibrosis. 相似文献