Approaches to Enhance Precise CRISPR/Cas9-Mediated Genome Editing

Modification of the human genome has immense potential for preventing or treating disease. Modern genome editing techniques based on CRISPR/Cas9 show great promise for altering disease-relevant genes. The efficacy of precision editing at CRISPR/Cas9-induced double-strand breaks is dependent on the relative activities of nuclear DNA repair pathways, including the homology-directed repair and error-prone non-homologous end-joining pathways. The competition between multiple DNA repair pathways generates mosaic and/or therapeutically undesirable editing outcomes. Importantly, genetic models have validated key DNA repair pathways as druggable targets for increasing editing efficacy. In this review, we highlight approaches that can be used to achieve the desired genome modification, including the latest progress using small molecule modulators and engineered CRISPR/Cas proteins to enhance precision editing.     

Use of Fourier transform infrared spectroscopy for rapid comparative analysis of Bacillus and Micrococcus isolates

The identification of foodborne microorganisms and their endospores in food products are important for food safety. The present work compares Bacillus (Bacillus licheniformis, Bacillus circulans and Bacillus subtilis) and Micrococcus (Micrococcus luteus) species with Fourier transform infrared (FTIR) spectroscopy. Our results show that there are several characteristic peaks belonging to both the Micrococcus and Bacillus species which can be used for the identification of these foodborne bacteria and their endospores. For Micrococcus species, a new band was observed at 1338 cm⁻¹ which may be due to acetate oxidation via the carboxylic acid cycle. The bands at 1313 cm⁻¹ and 1256 cm⁻¹ can be explained by an exopolymer formation and the other bands at 1074 cm⁻¹ and 550 cm⁻¹, may be due to the glycogen-like storage material in Micrococcus spp. There are also characteristic peaks at 993 cm⁻¹ and 801 cm⁻¹ for these bacterial species. Different Bacillus species also showed characteristic peaks at 1000–500 cm⁻¹ region. Dipicolinic acid (DPA) bands at ∼728 cm⁻¹ and ∼703 cm⁻¹ seen only in B. circulans were the marker of an endospore formation.     

Chemical injection application at tunnel service shaft to prevent ground settlement induced by groundwater drainage: A case study

Chemical injections are used in a variety of applications in civil and mining engineering, including ground stabilization, support anchoring, strata sealing, reduction and diversion of groundwater flow and water ingress, and creation of a load-bearing ring during tunneling. Historically, injection application without pressure was first employed by the Romans. Polyurethane injections have been used in coal mines to stabilize roofs and to reduce problems regarding water ingress in shafts and tunnels. This paper focuses on chemical injection, which was employed to prevent ground settlement induced by groundwater drainage from the shaft. As a result of the drainage of 4.5 l/s groundwater from the Shaft 4, which was sunk for service at Guzelyali station of Izmir Metro Project, the groundwater level dropped 4 m from the original level, and ground settlement reached 98 mm, while the inner tunnel vertical convergence was 23 mm. This can be explained with the closure of pore volumes in the overburden. Ground settlement was stopped and groundwater level approached its original level after chemical injection.     

Oxidative DNA damage correlates with carotid artery atherosclerosis in hemodialysis patients

Oxidative stress is accepted as a nonclassical cardiovascular risk factor in chronic renal failure patients. The aim of this study was to evaluate the relation between oxidative DNA damage (8‐hydroxy‐2′‐deoxyguanosine/deoxyguanosine [8‐OHdG/dG] ratio), oxidative stress biomarkers, antioxidant enzymes, and carotid artery intima‐media thickness (CIMT) in hemodialysis (HD) patients. Forty chronic HD patients without known atherosclerotic disease and 48 age‐ and sex‐matched healthy individuals were included in the study. Plasma malondialdehyde (MDA) levels and 8‐OHdG/dG ratio were determined as oxidative stress markers. Superoxide dismutase (SOD) and glutathione peroxidase (GPx) activities were measured as antioxidants. CIMT was assessed by carotid artery ultrasonography. 8‐OHdG/dG ratios and MDA levels were higher; SOD and GPx activities were lower in HD patients compared to controls. HD patients had significantly higher CIMT compared to controls (0.61 ± 0.08 vs. 0.42 ± 0.05, p < 0.001). There was a significant positive correlation between CIMT and 8‐OHdG/dG ratio (r = 0.57, p < 0.01) and MDA levels (r = 0.41, p < 0.01), while there was a significant negative correlation between CIMT and SOD (r = ?0.47, p < 0.01) and GPx levels (r = ?0.62, p < 0.01). It is firstly demonstrated that CIMT is positively correlated with oxidative DNA damage in HD patients without known atherosclerotic disease.     

Preparation and textile application of poly(methyl methacrylate-co-methacrylic acid)/n-octadecane and n-eicosane microcapsules

In this study, a series of microencapsulated phase change materials with poly(methyl methacrylate-co-methacrylic acid) P(MMA-co-MAA) shell and n-octadecane or n-eicosane core were synthesized by emulsion polymerization method. The aim was to produce microencapsulated n-alkanes having functional groups on their outer surface, so that functional groups would help increasing physical interactions between microcapsules and fiber surface. Therefore, methyl methacrylate (MMA), ethylene glycoldimethacrylate (EGDM), and methacrylic acid (MAA) were copolymerized in oil phase of n-alkane. FT-IR results proved the successful synthesis of P(MMA-co-MAA) shell of microencapsulated n-alkanes. The DSC results indicated that the microencapsulated n-alkanes have considerable latent heat storage capacity in a range of 58–145 J/g. The average melting and freezing temperatures of the microencapsulated n-alkanes were measured as 27 and 26 °C for n-octadecane and 36 and 35 °C for n-eicosane, respectively. The microcapsules were of spherical and compact shape with particle sizes between 15 and 32 μm. The microcapsules on the cotton fabric applied by pad-dry-cure method were found highly durable and they showed sufficient stability upon several washings and rub fastness. Thermo-regulating properties of the fabrics were declared as a result of thermal history measurements.     

Effects of Spray Drying Temperature and Additives on the Stability of Serine Alkaline Protease Powders

In this study, after production by recombinant Bacillus subtilis (BGSC-1A751), carrying pHV1431::subc gene in the complex medium and separation of solids from the fermentation broth, serine alkaline protease (SAP) was dried in order to investigate the stabilization during spray drying and subsequent storage. The effect of air inlet temperature of the spray dryer between T = 70 and 130°C and the effect of protective additives, glucose and maltodextrin, at 0–2% (w/v) on SAP activity during spray drying and storage stability of obtained SAP powders at 4°C for a long period (6 months) were evaluated. Increasing drying air inlet temperature generally resulted in an increase in activity loss; moreover, higher absorbance peaks observed at wave number 1061 cm^?1 of the IR spectrums when drying temperature is increased indicates the structural change in the SAP molecule. In most cases presence of additives provided higher activities both after drying and during storage period compared to no additive case. Drying the enzyme with 1% (w/v) glucose at T = 110°C resulted in the highest enzyme activity after drying and storage processes.     

A constant recursive convolution technique for frequency dependent scalar wave equation based FDTD algorithm

A scalar wave equation based recursive convolution finite-difference time-domain algorithm is developed for a frequency-dependent Debye medium in this paper. This algorithm is based on a recursive evaluation of a convolution integral in the time domain. A numerical example is presented for a problem of wide-band reflection from an air-water interface. The obtained results are compared with an analytical solution. The excellent agreement is observed between the numerical results. Memory and computational time advantages of the proposed method over Maxwell’s equations based solution are also shown.     

Effect of heat treatment on physical properties of CdO films deposited by sol–gel method

CdO film has been deposited by sol–gel spin coating method on the glass substrate and then the film has been annealed at 400, 500, 600 °C for 1 h. Effect of annealing temperature on the structural and optical properties of the film has been investigated. The crystal structure and orientation of the as-grown and annealed CdO films have been investigated by X-ray diffraction method. Annealed CdO films are polycrystalline with (111) preferential orientation. The information on strain and grain size is obtained from the full width-at-half-maximum (FWHM) of the diffraction peaks. Texture coefficient and lattice constant have been calculated. The surface morphology of the films has been analyzed. The optical band gap value decreased with increasing the annealing temperatures.     

Impacts of some building passive design parameters on heating demand for a cold region

In this study, the impact of passive design parameters such as building shape and orientation position on heating demand has been theoretically investigated. Therefore, a transient heat transfer problem in the building envelope with insulation and without insulation is solved by using the finite difference method. The considered buildings are placed on the ground with the azimuth angles from 0^°$0^{°}$ to 90^°${90}^{°}$. The heat loss per unit area of the buildings is computed by hour–hour and the yearly energy consumption of the buildings is also determined in the simulation model. The climatic data of Elazigˇ (38.4^°N)$(38.4^{°}\mathrm{N})$, a city located in a cold region of Turkey, are considered for the analysis. It is shown that buildings with a square shape have more advantages, and the most suitable orientation angles are 0^°$0^{°}$ and 80^°${80}^{°}$ for buildings having shape factors (the ratio of building length to building depth ) 2/1 and 1/2, respectively.