Synthesis of ternary zinc spinel oxides and their application in the photodegradation of organic pollutant

Ternary zinc spinel oxides such as Zn₂SnO₄, ZnAl₂O₄ and ZnFe₂O₄ were synthesized and characterized, and their activities in the photodegradation of phenol molecules were investigated. Zn₂SnO₄, ZnAl₂O₄ and ZnFe₂O₄ powders were synthesized by hydrothermal, metal–chitosan complexation and solvothermal routes, respectively. The face-centered cubic spinel structure of each material was confirmed by powder X-ray diffractometry (XRD) and its porous structure by N₂ adsorption–desorption isotherms. The characterization of spinels was complemented with Fourier transform infrared spectroscopy (FTIR) and X-rays fluorescence (XRF), revealing the formation of spinel structures with high purity. The photocatalytic activity in the degradation of phenol was observed only with Zn₂SnO₄ oxide. Mineralization degree of phenol molecules by Zn₂SnO₄ photocatalyst determined by total organic carbon analysis (TOC) reached 80% at 360 min under sunlight.     

Combined Mutagenesis and Kinetics Characterization of the Bilin‐Binding GAF Domain of the Protein Slr1393 from the Cyanobacterium Synechocystis PCC6803

The gene slr1393 from Synechocystis sp. PCC6803 encodes a protein composed of three GAF domains, a PAS domain, and a histidine kinase domain. GAF3 is the sole domain able to bind phycocyanobilin (PCB) as chromophore and to accomplish photochemistry: switching between a red‐absorbing parental and a green‐absorbing photoproduct state (λ_max=649 and 536 nm, respectively). Conversions in both directions were followed by time‐resolved absorption spectroscopy with the separately expressed GAF3 domain of Slr1393. Global fit analysis of the recorded absorbance changes yielded three lifetimes (3.2 μs, 390 μs, and 1.5 ms) for the red‐to‐green conversion, and 1.2 μs, 340 μs, and 1 ms for the green‐to‐red conversion. In addition to the wild‐type (WT) protein, 24 mutated proteins were studied spectroscopically. The design of these site‐directed mutations was based on sequence alignments with related proteins and by employing the crystal structure of AnPixJg2 (PDB ID: 3W2Z), a Slr1393 orthologous from Anabaena sp. PCC7120. The structure of AnPixJg2 was also used as template for model building, thus confirming the strong structural similarity between the proteins, and for identifying amino acids to target for mutagenesis. Only amino acids in close proximity to the chromophore were exchanged, as these were considered likely to have an impact on the spectral and dynamic properties. Three groups of mutants were found: some showed absorption features similar to the WT protein, a second group showed modified absorbance properties, and the third group had lost the ability to bind the chromophore. The most unexpected result was obtained for the exchange at residue 532 (N532Y). In vivo assembly yielded a red‐absorbing, WT‐like protein. Irradiation, however, not only converted it into the green‐absorbing form, but also produced a 660 nm, further‐red‐shifted absorbance band. This photoproduct was fully reversible to the parental form upon green light irradiation.     

Static analysis of a Bickford beam by means of the DQEM

In this paper the recently proposed differential quadrature element method is employed in order to solve the equilibrium equations of a higher-order beam. A simple five-node element is introduced, in which the vertical displacement is approximated by a sixth-order polynomial, whereas the rotation is consistently approximated by a fourth-order polynomial, and the resulting weighting coefficient matrix is given. Moreover, a general procedure is outlined, for an N-node element, in which vertical displacements and rotations are given by polynomials of order N+1 and N-1, respectively. Numerical examples are aimed both at checking the convergence of the results for increasing values of the nodes, and at comparing the used cubic beam theory with the simpler, linear, Timoshenko theory.     

Atomic force microscopy of protein films and crystals

A customized atomic force microscopy (AFM) instrument optimized for imaging protein crystals in solution is described. The device was tested on crystals and Langmuir-Blodgett (LB) films of two proteins with quite different molecular weights. This approach enables the periodicity and morphology of crystals to be studied in their mother liquid, thereby preserving the native periodic protein crystal structure, which is typically destroyed by drying. Moreover, the instrument appears to distinguish protein crystals from salt crystals, which under the optical microscope are frequently quite similar, the difference between them often being revealed only during x-ray analysis. AFM estimates of the packing, order, and morphology of the given single proteins appear quite similar in the LB thin film and in the crystals, which means that routine crystal measurements can be performed at high resolution. The AFM consists of a custom-built measuring head and a homemade flexible SPM controller which can drive the head for contact, noncontact and spectroscopy modes, thus providing the user with a high degree of customization for crystal measurement.     

The Lazy Cook Problem, or Scheduling Two Parallel Machines to Optimize Vehicle Utilization

A cook has to prepare n cakes using an oven with two racks. According to the recipe, the i-th cake has to be baked for exactly a _i minutes. Cakes to be cooked are taken from a table and carried to the oven, and once cooked are carried back to the table by means of a trolley that can carry two cakes at a time. What is the minimum number q ^* of round trips required of the cook? This problem has application to the operation scheduling of transportation systems and to material cutting. A different problem arises according to whether the cook accepts or not to stay near the oven for awhile with the trolley. If the trolley cannot be idle at the oven, an optimum schedule with no oven idle-time always exists: consequently, the trolley schedule is trivial, and the problem is transformed into a set packing. For this case, we propose and test a heuristic method which generates all of the promising columns of the set packing, and solves the resulting problem by branch-and-bound. Instead, if the trolley can be idle at the oven for a limited amount of time, a problem arises to find an optimal schedule of the trolley: in this case we show how to use a scaling technique in order to obtain a very good feasible solution by the method above.     

Mechanism of superacid catalyzed alkane activation: theoretical ab initio studies of pentacoordinated carbonium ion rearrangement

A theoretical ab initio study of the interconversion of pentacoordinated carbonium ions was carried out. For the isobutonium cations it was found that the respective C-carbonium ions were lower in energy than the H-isobutonium ions. Nevertheless, the interconversion of the 1-H-isobutonium cation in the C-isobutonium ion is a barrierless process. This suggests that product arisen from C–C protonation in liquid superacid and zeolite catalyzed alkane activation may be formed by protonation in the outer and more accessible primary C–H bonds of isobutane, rather than by direct protonation of the inner and more steric demanding C–C bonds. This revised version was published online in June 2006 with corrections to the Cover Date.     

Prototype calculations of B2 miscibility gaps in ternary b.c.c. systems with strong ordering tendencies

Prototype calculations in ternary ordering systems based on the b.c.c. lattice have been carried out with the Cluster Variation Method (CVM) in the irregular tetrahedron approximation including tetrahedron interactions. The systems under investigations were characterized by strong ordering tendencies (i.e. with large, negative first neighbour interactions in all binary sub-systems) which resulted in the opening of a miscibility gap inside the B2 single-phase field. This miscibility gap is shown to be produced by frustration of the B2 cluster by a calculation using a hypothetical system with identical first neighbour interactions in the three binary sub-systems. This phase diagram presents as a key feature a central three-phase miscibility gap, which transforms into an ordinary two-phase miscibility gap involving two B2 phases after the symmetry of the interactions is broken. The results are discussed in connection with the experimental Fe–Ti–Rh phase diagram.     

D-Index: Distance Searching Index for Metric Data Sets

In order to speedup retrieval in large collections of data, index structures partition the data into subsets so that query requests can be evaluated without examining the entire collection. As the complexity of modern data types grows, metric spaces have become a popular paradigm for similarity retrieval. We propose a new index structure, called D-Index, that combines a novel clustering technique and the pivot-based distance searching strategy to speed up execution of similarity range and nearest neighbor queries for large files with objects stored in disk memories. We have qualitatively analyzed D-Index and verified its properties on actual implementation. We have also compared D-Index with other index structures and demonstrated its superiority on several real-life data sets. Contrary to tree organizations, the D-Index structure is suitable for dynamic environments with a high rate of delete/insert operations.     

Ectopic expression of pRb2/p130 suppresses the tumorigenicity of the c-erbB-2-overexpressing SKOV3 tumor cell line

We investigated the in vitro and in vivo effects of the ectopic expression of the pRb2/p130 cell cycle regulator on c-erbB-2-associated tumorigenicity. SKOV3 ovarian cancer cells, which display c-erbB-2 gene amplification and oncoprotein (p185HER2) overexpression, were stably transfected with a plasmid containing the coding sequence for human wild-type pRb2/p130 (wtRb2), or with pcDNA3 empty vector. Three wtRb2-transfected clones (cl. 24, ci. 49, cl. 100) and one empty vector-transfected clone (cl. mock) were randomly picked and further analysed. Western blot analysis revealed high levels of pRb2/p130 in the three clones compared to mock cells. Levels of p185HER2 and the extent of its tyrosine phosphorylation were similar in all transfectant clones, as were levels of pRb1 and p107. In anchorage-independent growth assays, the number of colonies from wtRb2 clone-transfectants was about 90% less than that arising from mock cells (P<0.001). Tumor take rates of the three wtRb2-transfected clones xenografted in nu/nu mice were much lower than those of mock cells, and tumor volume was decreased by 80% (P<0.001). A mutant version of pRb2/p130 deleted of the pocket region (mut-Rb2) was also transfected into SKOV3 cells and studied in parallel with the wtRb2-transfected and pcDNA empty vector-transfected bulk populations. mut-Rb2 transfected cells showed no inhibition of in vitro colony formation and were fully tumorigenic. Together, these findings indicate that Rb2 acts as a tumor suppressor gene in vivo and in vitro in SKOV3 cells and that the intact pocket region is required for the suppressor activity.