Models for circular data from time series spectra

Circular data are those for which the natural support is the unit circle and its toroidal extensions. Numerous constructions have been proposed which can be used to generate models for such data. We propose a new, very general, one based on the normalization of the spectra of complex-valued stationary processes. As illustrations of the new construction's application, we study models for univariate circular data obtained from the spectra of autoregressive moving average models and relate them to existing models in the literature. We also propose and investigate multivariate circular models obtained from the high-order spectra of stationary stochastic processes generated using linear filtering with an autoregressive moving average response function. A new family of distributions for a Markov process on the circle is also introduced. Results for asymptotically optimal inference for dependent observations on the circle are presented which provide a new paradigm for inference with circular models. The application of one of the new families of spectra-generated models is illustrated in an analysis of wind direction data.     

Self-Assembling Lectin Nano-Block Oligomers Enhance Binding Avidity to Glycans

Lectins, carbohydrate-binding proteins, are attractive biomolecules for medical and biotechnological applications. Many lectins have multiple carbohydrate recognition domains (CRDs) and strongly bind to specific glycans through multivalent binding effect. In our previous study, protein nano-building blocks (PN-blocks) were developed to construct self-assembling supramolecular nanostructures by linking two oligomeric proteins. A PN-block, WA20-foldon, constructed by fusing a dimeric four-helix bundle de novo protein WA20 to a trimeric foldon domain of T4 phage fibritin, self-assembled into several types of polyhedral nanoarchitectures in multiples of 6-mer. Another PN-block, the extender PN-block (ePN-block), constructed by tandemly joining two copies of WA20, self-assembled into cyclized and extended chain-type nanostructures. This study developed novel functional protein nano-building blocks (lectin nano-blocks) by fusing WA20 to a dimeric lectin, Agrocybe cylindracea galectin (ACG). The lectin nano-blocks self-assembled into various oligomers in multiples of 2-mer (dimer, tetramer, hexamer, octamer, etc.). The mass fractions of each oligomer were changed by the length of the linkers between WA20 and ACG. The binding avidity of the lectin nano-block oligomers to glycans was significantly increased through multivalent effects compared with that of the original ACG dimer. Lectin nano-blocks with high avidity will be useful for various applications, such as specific cell labeling.     

Investigation of radiation-induced surface activation effect in austenitic stainless steel under ultraviolet and γ-ray irradiations

The radiation-induced surface activation (RISA) effect will be applied to the core design in supercritical light water reactor (SCWR) in order to achieve a high performance with excellent economy and safety. The purpose of the present study is to investigate the RISA effect in the candidate fuel cladding materials in SCWR such as PNC1520. The change of weldability due to RISA effect and the related microstructure analysis were performed in oxidized PNC1520 and 304 stainless steel with various oxidization periods. The phases contained in the surface oxide layer of the present specimen were identified as Fe₂CrO₄, γ-Fe₂O₃, and Fe₂O₃. The lifetime of 13.8 days for wettability improving factor was confirmed in the ultraviolet (UV) irradiation. Meanwhile, the long life of 13.8 days and short life of 0.8 days for wettability improving factors were identified in the γ-ray irradiation. Based on the fact that the band gap energies of Fe₂CrO₄, γ-Fe₂O₃, and Fe₂O₃ were, respectively, 2.1, 2.0, and 2.2 eV, and the photo energies of UV and γ-ray irradiation were 4.48 eV and 13.3 MeV, it is therefore clarified that the hydrophilization on the oxide layer is ascribed to the RISA effect.     

Degradation of cyanuric acid in soil by Pseudomonas sp. NRRL B-12227 using bioremediation with self-immobilization system

The rates of degradation of cyanuric acid, a key intermediate in a metabolic pathway of s-triazine herbicides, were measured for Pseudomonas sp. NRRL B-12227. The rate of degradation was affected by the rate of cyanuric acid transport through cell membranes and the activity of cyanuric acid amidohydrolase inside the cells. At low concentrations of cyanuric acid, the acclimation of cells to cyanuric acid and/or added nutrients effectively enhanced the degradation rate. The strain was also applied to bioremediation using a Bioremediation with Self-Immobilization System (BSIS), in which Pseudomonas sp. NRRL B-12227 cells were co-immobilized with Bacillus subtilis, the latter of which secretes a viscous polymer, in a shallow layer of soil packed in a column. More than 70% of the Pseudomonas sp. NRRL B-12227 cells were co-immobilized with the B. subtilis in a 7.5 cm layer of the packed soil by self-aggregation. More than 60% of the 1 mM cyanuric acid supplied to the packed soil was degraded in this layer during a 72 h period.     

Lipid characteristics of two subtropical Seriola fishes, Seriola dumerili and Seriola rivoliana, with differences between cultured and wild varieties

The lipid and fatty acid compositions of the muscle and liver of two subtropical Seriola fish species, Seriola dumerili and Seriola rivoliana, were investigated. The lipid levels of cultured S. dumerili were significantly higher than were those of the wild ones. Triacylglycerols and phospholipids were the dominant lipids of both the cultured and wild. In both species, the major fatty acids in the muscle and liver triacylglycerols were 14:0 (cultured), 16:0, 18:0, 16:1n-7, 18:1n-7, 18:1n-9, 18:2n-6 (linoleic acid: LA, cultured), 20:5n-3, and 22:6n-3. In spite of similar levels of many of the fatty acids between cultured and wild triacylglycerols, the cultured samples had markedly higher levels of LA with trace levels of 20:4n-6 (arachidonic acid: ARA) and 22:5n-6, while the wild ones had very low 18:2n-6 levels with small levels of ARA and 22:5n-6. The ratio (R(LA/ARA)) of LA to ARA in the cultured samples was markedly higher than were those of the wild samples.     

Processability and mechanical properties for binary blends of PP and LLDPE produced by metallocene catalyst

Processability at extrusion coating and mechanical properties of the films obtained are investigated by means of linear and nonlinear rheological measurements and tensile tests for blends of polypropylene (PP) and linear low‐density polyethylene (LLDPE). Both materials are produced by metallocene catalyst. The processability of PP is found to be improved by the addition of LLDPE; the blend shows low level of motor torque and head pressure in an extruder and small level of neck‐in as compared with pure PP. Further, the anisotropy of ultimate tensile strength, which is prominent for PP, is reduced by blending with LLDPE. As a result, the blend having 20 wt % of LLDPE shows appropriate properties in the molten state for extrusion coating and in the solid state as a film. © 2009 Wiley Periodicals, Inc. J Appl Polym Sci, 2009     

A Method for Systematic Assessment of Intrinsically Disordered Protein Regions by NMR

Intrinsically disordered proteins (IDPs) that lack stable conformations and are highly flexible have attracted the attention of biologists. Therefore, the development of a systematic method to identify polypeptide regions that are unstructured in solution is important. We have designed an “indirect/reflected” detection system for evaluating the physicochemical properties of IDPs using nuclear magnetic resonance (NMR). This approach employs a “chimeric membrane protein”-based method using the thermostable membrane protein PH0471. This protein contains two domains, a transmembrane helical region and a C-terminal OB (oligonucleotide/oligosaccharide binding)-fold domain (named NfeDC domain), connected by a flexible linker. NMR signals of the OB-fold domain of detergent-solubilized PH0471 are observed because of the flexibility of the linker region. In this study, the linker region was substituted with target IDPs. Fifty-three candidates were selected using the prediction tool POODLE and 35 expression vectors were constructed. Subsequently, we obtained ¹⁵N-labeled chimeric PH0471 proteins with 25 IDPs as linkers. The NMR spectra allowed us to classify IDPs into three categories: flexible, moderately flexible, and inflexible. The inflexible IDPs contain membrane-associating or aggregation-prone sequences. This is the first attempt to use an indirect/reflected NMR method to evaluate IDPs and can verify the predictions derived from our computational tools.     

Comparative analysis of starch properties of different root and tuber crops of Sri Lanka

The physicochemical properties of starches of six different root and tuber crop species grown mainly in Sri Lanka showed significant differences among the tested crop species and varieties. The median granule size of starch of tested root and tuber crop species varied from 33.5 to 10.2 μm. The largest granule size and the highest blue value were given by the canna, Buthsarana, and yam species, in that order. The amylose content of cassava was higher than those of sweet potato and many yams. High peak viscosities, high breakdown, and high final viscosities were observed in yams, and, generally, such starch showed a high swelling power. According to the correlation analysis, these pasting properties would mainly be due to their larger starch granule size. Based on the thermal properties, cassava starch showed less energy requirement for gelatinization and thus gelatinized at lower temperatures. Furthermore, a higher susceptibility of raw cassava starch toward fungal glucoamylase was observed. The low enzyme digestibility of raw yam starch would be due to its large granules. Correlation analysis showed that the blue value and starch granule size were important in determining the pasting, thermal, and other properties of starch.     

Metastatic Voyage of Ovarian Cancer Cells in Ascites with the Assistance of Various Cellular Components

Epithelial ovarian cancer (EOC) is the most lethal gynecologic malignancy and has a unique metastatic route using ascites, known as the transcoelomic root. However, studies on ascites and contained cellular components have not yet been sufficiently clarified. In this review, we focus on the significance of accumulating ascites, contained EOC cells in the form of spheroids, and interaction with non-malignant host cells. To become resistant against anoikis, EOC cells form spheroids in ascites, where epithelial-to-mesenchymal transition stimulated by transforming growth factor-β can be a key pathway. As spheroids form, EOC cells are also gaining the ability to attach and invade the peritoneum to induce intraperitoneal metastasis, as well as resistance to conventional chemotherapy. Recently, accumulating evidence suggests that EOC spheroids in ascites are composed of not only cancer cells, but also non-malignant cells existing with higher abundance than EOC cells in ascites, including macrophages, mesothelial cells, and lymphocytes. Moreover, hetero-cellular spheroids are demonstrated to form more aggregated spheroids and have higher adhesion ability for the mesothelial layer. To improve the poor prognosis, we need to elucidate the mechanisms of spheroid formation and interactions with non-malignant cells in ascites that are a unique tumor microenvironment for EOC.     

Current distribution in a two-dimensional narrow gap cell composed of a gas evolving electrode with an open part

On the basis of the observation of gas bubbles evolved by electrolysis, a two-dimensional vertical model cell composed of electrodes with open parts for releasing gas bubbles to the back side is proposed. The model cell consists of two layers. One layer forms a bubble curtain with a maximum volume fraction of gas bubbles in the vicinity of the working electrode with open parts. The other. being located out of the bubble layer, is a convection layer with a small volume fraction distributed in the vertical direction under forced convection conditions. The cell resistance and the current distribution were computed by the finite element method when resistivity in the back side varied in the vertical direction along the cell. The following three cases for overpotential were considered: no overpotential, overpotential of the linear type and overpotential of the Butler-Volmer type. It was found that the cell resistance was determined not only by the interelectrode gap but also by the percentage of open area and in some cases by the superficial surface area. The cell resistance varied only slightly with the distribution of the bubble layer in the back side.Nomenclature b linear overpotential coefficient given byb=/i - C proportionality constant given by Equation 15 - d ₁ distance between front side of working electrode and separator - d ₂ thickness of separator - F Faraday constant - I total current per half pitch - i current density at working electrode - i ₀ exchange current density - L length of a real electrolysis cell - n number of electrons transferred in electrode reaction - O _p percentage of open area given by Equation 1 - p pitch, i.e. twice the length of the unit cell, defined by 2(BC) in Fig. 4 - q thickness of bubble curtain, defined by (AM) in Fig. 4 - R gas constant - r _t total cell resistance - r unit-cell resistance defined by (V – V _eq)/I - r _rs residue ofr from sum ofr ₀ andr - r ₀ ohmic resistance of solution when0 _p=0 - r resistance due to overpotential when0 _p=0 - s electrode surface ratio or superficial surface area given by Equation 2 for the present model - T absolute temperature - t thickness of working electrode defined by EF in Fig. 4 - V cell voltage - V _eq open circuit potential difference between working and counter electrodes - solution velocity in cell - ₀ solution velocity at bottom of cell - w width of working electrode, defined by 2(DE) in Fig. 4 - x abscissa located on cell model - y ordinate located on cell model - anodic transfer coefficient - linear overpotential kinetic parameter defined byb/[_bc(p/2)] - d infinitesimally small length on the boundary - volume fraction of gas bubbles in cell - dimensionless cell voltage defined bynF(V – V _eq)/RT - overpotential at working electrode - Butler-Volmer overpotential kinetic parameter defined by [nFi _0bc(p/2)]/RT - coordinate perpendicular to boundary of model cell - ₁ resistivity of bubble-free solution - ₂ resistivity of separator - _bc resistivity of bubble curtain - potential in cell