Functional analysis of a rickettsial OmpA homology domain of Shigella flexneri icsA

Shigella flexneri is a gram-negative bacterium that causes diarrhea and dysentery by invasion and spread through the colonic epithelium. Bacteria spread by assembling actin and other cytoskeletal proteins of the host into "actin tails" at the bacterial pole; actin tail assembly provides the force required to move bacteria through the cell cytoplasm and into adjacent cells. The 120-kDa S. flexneri outer membrane protein IcsA is essential for actin assembly. IcsA is anchored in the outer membrane by a carboxy-terminal domain (the beta domain), such that the amino-terminal 706 amino acid residues (the alpha domain) are exposed on the exterior of the bacillus. The alpha domain is therefore likely to contain the domains that are important to interactions with host factors. We identify and characterize a domain of IcsA within the alpha domain that bears significant sequence similarity to two repeated domains of rickettsial OmpA, which has been implicated in rickettsial actin tail formation. Strains of S. flexneri and Escherichia coli that carry derivatives of IcsA containing deletions within this domain display loss of actin recruitment and increased accessibility to IcsA-specific antibody on the surface of intracytoplasmic bacteria. However, site-directed mutagenesis of charged residues within this domain results in actin assembly that is indistinguishable from that of the wild type, and in vitro competition of a polypeptide of this domain fused to glutathione S-transferase did not alter the motility of the wild-type construct. Taken together, our data suggest that the rickettsial homology domain of IcsA is required for the proper conformation of IcsA and that its disruption leads to loss of interactions of other IcsA domains within the amino terminus with host cytoskeletal proteins.     

Phenol-degrading denitrifying bacteria in wastewater sediments

The simultaneous determination of amino and organic acids in plant tissue extracts using capillary gas chromatography is described. Plant leaves were extracted in 5% (w/v) perchloric acid and neutralized extracts were purified using C18 cartridges. The amino and organic acids in purified extracts were then converted to tert-butyldimethylsilyl (TBDMS) derivatives prior to separation and detection by capillary gas chromatography (GC) with flame ionization detection. Conditions required for optimal derivatization were investigated. Amino and organic acids were readily converted to their TBDMS derivatives using N-methyl-N-tert-butyldimethylsilyltrifluoroacetamide in dimethylformamide solvent 1:6 (v/v) with an average recovery of 90% and a reproducibility of about 5%. The characteristic [M-57] and [M-159] fragment ion of the TBDMS derivatives was confirmed using GC-MS. The proposed method was demonstrated by the determination of amino and organic acids in extracts of Acacia and Eucalyptus leaves, where detection limits were 1-20 ng.     

Factors affecting the potentiometric response of all-solid-state solvent polymeric membrane calcium-selective electrode for low-level measurements

An all-solid-state calcium-selective electrode was constructed with poly(pyrrole) solid-contact doped with calcium complexing ligand Tiron. The potentiometric response of this sensor can have a linear range down to 10(-)(9) M with a slope close to Nernstian and detection limit equal to 10(-)(9.6). The effects of pH and the activity of the interfering ion in the conditioning solution on the potentiometric behavior of the constructed sensors were examined. Potential stability, reproducibility, and impedance studies were performed. The selectivity of the constructed electrode is better than that of the conventional calcium-selective electrode with internal filling solution of 10(-)(2) M CaCl(2) and comparable to that of the best liquid-contact electrodes.     

Strong Negation and Equivalence in the Safe Belief Semantics

The safe belief semantics uses intermediate logics to definean extension of answer sets to all propositional formulas, butonly considering one kind of negation. In this work we extendsafe beliefs adding the strong negation connective. The mainfeature of our extension is that strong negation can occur beforeany formula, and not only at the atomic level. We give resultsconcerning the relation between strong negation extensions ofintermediate logics and safe beliefs and consider the way inwhich strong negation can be eliminated from any formula whilepreserving its semantics. We also propose two new notions ofequivalence: substitution equivalence and contextualized equivalence.We prove that they are both more general than strong equivalenceand, for propositional formulas where strong negation may occurat the non-atomic level, substitution equivalence captures anotion of equivalence that cannot be captured by strong equivalencealone.     

Impact of including land-use change emissions from biofuels on meeting GHG emissions reduction targets: the example of Ireland

The greenhouse gases (GHG) emissions from land-use change are of particular concern for land-based biofuels. Emissions avoided by substituting fossil fuels with biofuels may be offset by emissions from direct and indirect land-use changes (LUC). There is an urgent need to investigate what impact land-use change emissions may have on the expansion of bioenergy and biofuels, in the context of EU mitigation policies. This paper focuses on Ireland, which faces a number of challenges in delivering its renewable energy and GHG reduction targets. The Irish TIMES energy systems model was used to assess the impact of a range of land-use change emissions’ levels on the evolution of Ireland’s low-carbon energy system. A reference scenario was developed where LUC is ignored and Ireland achieves a least-cost low-carbon energy system by 2050. If high indirect land-use change (ILUC) emissions are included, this results in a decrease by 30 % in bioenergy and a 68 % increase in marginal abatement costs by 2050. Hydrogen is used instead of bioenergy in the freight sector in this scenario, while private cars are fuelled by renewable electricity. If GHG emissions from ILUC were considered less severe, indigenous grass biomethane becomes the key biofuel representing 31 % of total bioenergy consumption. This is in line with recent research in Ireland of the key role that grass biomethane can play.     

Synthesis and characterization of core–shell SiO2@(Er3+,Yb3+):Lu2O3

We synthesized crystalline Erbium Er³⁺ and Ytterbium Yb³⁺ codoped -Lu₂O₃ nanolayers on SiO₂ microspheres using the modified Pechini method. Two different kinds of precursors, nitrates and chlorides, have been used leading to a layer-to-layer morphology and necklaces structures, respectively. In both cases, the size of nanocrystallites constituting the optical active layer is around 5 nm. We performed X-ray powder diffraction to confirm the cubic crystalline structure of the sesquioxides layer. High resolution transmission electron microscopy analyses corroborate the crystalline nature of the layer. The optical emission of Er³⁺ in the visible range has been recorded.     

Diminazene Aceturate Stabilizes Atherosclerotic Plaque and Attenuates Hepatic Steatosis in apoE-Knockout Mice by Influencing Macrophages Polarization and Taurine Biosynthesis

Atherosclerosis and nonalcoholic fatty liver disease are leading causes of morbidity and mortality in the Western countries. The renin–angiotensin system (RAS) with its two main opposing effectors, i.e., angiotensin II (Ang II) and Ang-(1–7), is widely recognized as a major regulator of cardiovascular function and body metabolic processes. Angiotensin-converting enzyme 2 (ACE2) by breaking-down Ang II forms Ang-(1–7) and thus favors Ang-(1–7) actions. Therefore, the aim of our study was to comprehensively evaluate the influence of prolonged treatment with ACE2 activator, diminazene aceturate (DIZE) on the development of atherosclerotic lesions and hepatic steatosis in apoE^−/− mice fed a high-fat diet (HFD). We have shown that DIZE stabilized atherosclerotic lesions and attenuated hepatic steatosis in apoE^−/− mice fed an HFD. Such effects were associated with decreased total macrophages content and increased α-smooth muscle actin levels in atherosclerotic plaques. Moreover, DIZE changed polarization of macrophages towards increased amount of anti-inflammatory M2 macrophages in the atherosclerotic lesions. Interestingly, the anti-steatotic action of DIZE in the liver was related to the elevated levels of HDL in the plasma, decreased levels of triglycerides, and increased biosynthesis and concentration of taurine in the liver of apoE^−/− mice. However, exact molecular mechanisms of both anti-atherosclerotic and anti-steatotic actions of DIZE require further investigations.     

Application of the method of fundamental solutions and radial basis functions for inverse transient heat source problem

The paper considers the determination of heat sources in unsteady 2-D heat conduction problem. The determination of the strength of a heat source is achieved by using the boundary condition, initial condition and a known value of temperature in chosen points placed inside the domain. For the solution of the inverse problem of identification of the heat source the θ-method with the method of fundamental solution and radial basis functions is proposed. Due to ill conditioning of the inverse transient heat conduction problem the Tikhonov regularization method based on SVD decomposition was used. In order to determine the optimum value of the regularization parameter the L-curve criterion was used. For testing purposes of the proposed algorithm the 2-D inverse boundary-initial-value problems in square region Ω with the known analytical solutions are considered. The numerical results show that the proposed method is easy to implement and pretty accurate. Moreover the accuracy of the results does not depend on the value of the θ parameter and is greater in the case of the identification of the temperature field than in the case of the identification of the heat sources function.     

Improved capacitance characteristics during electrochemical charging of carbon nanotubes modified with polyoxometallate monolayers

By modification of surfaces of multi-walled carbon nanotubes with ultra-thin monolayer-type films of phosphododecamolybdic acid, H₃PMo₁₂O₄₀, an electrode material with improved capacitance properties is produced. It is apparent from three distinct test experiments (based on cyclic voltammetry, galavanostatic charging-discharging and AC impedance) that capacitors utilizing H₃PMo₁₂O₄₀-modified carbon nanotubes are characterized by specific capacitances and energy densities on the levels of 40 F g⁻¹ and 1.3 Wh kg⁻¹, whereas the respective values for the systems built from bare carbon nanotubes are lower, 22 F g⁻¹ and 0.7 Wh kg⁻¹. It is reasonable to expect that fast and reversible multi-electron transfers of the Keggin-type H₃PMo₁₂O₄₀ account for the pseudocapacitance effect and significantly contribute to the observed overall capacitance.