Investigating the Role of Conformational Effects on Laccase Stability and Hyperactivation under Stress Conditions

Fungal laccase from Steccherinum ochraceum 1833 displays remarkable stability under different harsh conditions: organic/buffer mixtures, thermal treatment, and microwave radiation. The behavior is particularly significant in the light of the sharp inactivation observed for two different fungal laccases. Laccase from S. ochraceum 1833 also displays hyperactivation under mild thermal treatment (60 °C). Molecular dynamics simulations at 80 °C explained how this laccase retains the geometry of the electron transfer pathway, thereby assuring electron transfer through the copper ions and thus maintaining its catalytic activity at high temperature. Spectroscopic studies revealed that the thermal activation corresponds to specific conformational changes in the protein. The results indicate that this laccase is potentially applicable under denaturing conditions that might be beneficial for the biotransformation of recalcitrant substrates.     

One Question,Multiple Answers: Biochemical and Biophysical Screening Methods Retrieve Deviating Fragment Hit Lists

Fragment‐based lead discovery is gaining momentum in drug development. Typically, a hierarchical cascade of several screening techniques is consulted to identify fragment hits which are then analyzed by crystallography. Because crystal structures with bound fragments are essential for the subsequent hit‐to‐lead‐to‐drug optimization, the screening process should distinguish reliably between binders and non‐binders. We therefore investigated whether different screening methods would reveal similar collections of putative binders. First we used a biochemical assay to identify fragments that bind to endothiapepsin, a surrogate for disease‐relevant aspartic proteases. In a comprehensive screening approach, we then evaluated our 361‐entry library by using a reporter‐displacement assay, saturation‐transfer difference NMR, native mass spectrometry, thermophoresis, and a thermal shift assay. While the combined results of these screening methods retrieve 10 of the 11 crystal structures originally predicted by the biochemical assay, the mutual overlap of individual hit lists is surprisingly low, highlighting that each technique operates on different biophysical principles and conditions.     

PBS-co-DEG与热塑性淀粉共混膜的性能研究

采用流延法制备了不同二甘醇(DEG)含量的聚丁二酸丁二醇二甘醇共聚酯(PBS-co-DEG)与热塑性淀粉(TPS)共混的复合膜,通过核磁共振氢谱仪、傅里叶变换红外光谱仪、凝胶渗透色谱仪、热重分析仪、紫外–可见分光光度计、偏光显微镜等对共聚酯的结构及复合膜的性能进行了表征和测试,采用N435脂肪酶对复合膜进行了降解实验。结果表明,随DEG含量的增加PBS-co-DEG/TPS复合膜的亲水性、光透过率和断裂伸长率均有所增加,热稳定性变化不明显;与PBS/TPS复合膜相比,PBS-co-DEG/TPS复合膜的酶降解速率显著提高。     

Structural Insights into the Recognition of N2‐Aryl‐ and C8‐Aryl DNA Lesions by the Repair Protein XPA/Rad14

Aromatic amines are strongly carcinogenic. They are activated in the liver to give reactive nitrenium ions that react with nucleobases within the DNA duplex. The reaction occurs predominantly at the C8 position of the dG base, thereby giving C8‐acetyl‐aryl‐ or C8‐aryl‐dG adducts in an electrophilic aromatic substitution reaction. Alternatively, reaction with the exocyclic 2‐NH₂ group is observed. Although the C8 adducts retain base‐pairing properties, base pairing is strongly compromised in the case of the N² adducts. Here we show crystal structures of two DNA lesions, N²‐acetylnaphthyl‐dG and C8‐fluorenyl‐dG, within a DNA duplex recognized by the repair protein Rad14. The structures confirm that two molecules of the repair protein recognize the lesion and induce a 72 or 78° kink at the site of the damage. Importantly, the same overall kinked structure is induced by binding of the repair proteins, although the structurally different lesions result in distinct stacking interactions of the lesions within the duplex. The results suggest that the repair protein XPA/Rad14 is a sensor that recognizes flexibility. The protein converts the information that structurally different lesions are present in the duplex into a unifying sharply kinked recognition motif.     

Preparation of random poly(butylene alkylate-co-terephthalate)s with different methylene group contents: crystallization and degradation kinetics

Random copolyesters having 1,4-butanediol units were synthesized from a transesterification process between homopolymers constituted by aliphatic dicarboxylates (i.e. succinate, adipate or sebacate) and the aromatic therephthalate derivative, as verified by NMR spectroscopy. Biodegradability of resulting copolyesters was studied via enzymatic hydrolysis using Pseudomonas cepacia lipase at pH = 7.2 and 37 °C. Kinetics of degradation showed that in all cases the degradation rate decreased after 19 days of exposure. The observed glass transition temperatures, T _g, of the random copolyesters showed a non-linear dependence on composition, a feature that was explained in terms of the internal stiffening effect of butylene terephthalate units. Copolymers with higher aliphatic (i.e. 50 and 70 mol-%) and methylene (i.e. adipate and sebacate units) contents showed double melting peaks in DSC thermograms. These copolyesters resulted in two different crystalline rich phases after melt-crystallization and subsequent cooling. The ratio between these phases logically depended on the predominant aliphatic or aromatic dicarboxylate content. The copolymers initially crystallized via the aromatic units through a heterogeneous nucleation and a spherulitic growth. The presence of aliphatic dicarboxylate units hindered the beginning of the crystallization process, but the overall growth kinetic constant was similar for all samples. The secondary nucleation constants were determined and showed higher values for samples with higher adipate and sebacate contents.     

Comparison of two methods for extraction of volatiles from marine PL emulsions

The dynamic headspace (DHS) thermal desorption principle using Tenax GR tube, as well as the solid phase micro‐extraction (SPME) tool with carboxen/polydimethylsiloxane 50/30 µm CAR/PDMS SPME fiber, both coupled to GC/MS were implemented for the isolation and identification of both lipid and Strecker derived volatiles in marine phospholipids (PL) emulsions. Comparison of volatile extraction efficiency was made between the methods. For marine PL emulsions with a highly complex composition of volatiles headspace, a fiber saturation problem was encountered when using CAR/PDMS‐SPME for volatiles analysis. However, the CAR/PDMS‐SPME technique was efficient for lipid oxidation analysis in emulsions of less complex headspace. The SPME method extracted volatiles of lower molecular weights more efficient than the DHS method. On the other hand, DHS Tenax GR appeared to be more efficient in extracting volatiles of higher molecular weights and it provided a broader volatile spectrum for marine PL emulsion than the CAR/PDMS‐SPME method.     

Application of silica gel/polyaniline composite for adsorption of ascorbic acid from aqueous solutions

Silica gel and a chemically modified silica gel with polyaniline (PAN) were used for adsorption of ascorbic acid (AA) from aqueous solutions. The surface morphology of the adsorbents was studied by scanning electron microscopy (SEM). Adsorption experiments were carried out using both batch and columnar systems. In batch system, the effects of some important parameters such as sorbent dose, contact time, initial concentration and temperature of the adsorbate were studied. Based on regression analysis, the sorption data obtained for SiO₂ were best represented by Freundlich isotherm and for the PAN/SiO₂ composite, the equilibrium sorption data were fitted better by Langmuir isotherm. The kinetic studies showed that the adsorption of AA on both sorbents follows pseudo second-order kinetics which implies a chemisorption mechanism and according to diffusion model, intra-particle diffusion is the rate-controlling step. The thermodynamic studies also showed that PAN/SiO₂ is a more effective adsorbent to adsorb AA than an unmodified SiO₂. In columnar mode, the effects of salt on breakthrough curve were investigated. Two kinetic models, Thomas and Adams–Bohart, were applied to experimental data to predict the breakthrough curves using linear regression and determine the characteristic parameters of the column. Error analysis was carried out to investigate the adequacy and accuracy of the model equations. Desorption study showed that the adsorbed ascorbic acid is readily eluted from the column using dilute solution of NaOH. PAN/SiO₂ was found to be a promising solid phase adsorbent to preconcentrate ascorbic acid from aqueous solutions and subsequent analysis.     

Oxidative stability of structured lipids produced from sunflower oil and caprylic acid

Traditional sunflower oil (SO), randomized lipid (RL) and specific structured lipid (SL), both produced from SO and tricaprylin/caprylic acid, respectively, were stored for up to 12 wk to compare their oxidative stabilities by chemical and sensory analyses. Furthermore, the effect of adding a commercial antioxidant blend Grindox 117 (propyl gallate/ citric acid/ascorbyl palmitate) or gallic acid to the SL was investigated. The lipid type affected the oxidative stability: SL was less stable than SO and RL. The reduced stability was most likely caused by both the structure of the lipid and differences in production/ purification, which caused lower tocopherol content and higher initial levels of primary and secondary oxidation products in SL compared with RL and SO. Grindox 117 and gallic acid did not exert a distinct antioxidative effect in the SL oil samples during storage.     

Oxidative stability of milk drinks containing structured lipids produced from sunflower oil and caprylic acid

Milk drinks containing 5% traditional sunflower oil (SO), randomized lipid (RL) or specific structured lipid (SL) (both produced from SO and tricaprylin/caprylic acid) were compared with respect to their particle size, viscosity and oxidative stability during storage. Furthermore, the effect of adding potential antioxidants EDTA or gallic acid to the milk drink based on SL was investigated. The lipid type significantly affected the oxidative stability of the milk drinks: Milk drink based on SL oxidized faster than milk drink based on RL or SO. The reduced oxidative stability in the SL milk drink could not be ascribed to a single factor, but was most likely influenced by the structure of the lipid and differences in the process applied to produce and purify the lipids. EDTA was a strong antioxidant, while gallic acid did not exert a distinct antioxidative effect in the milk drink based on SL.