FTIR Microscopic Studies on Normal, Polyp, and Malignant Human Colonic Tissues

Fourier-Transform Infrared Spectroscopy (FTIR) employs a unique approach tooptical diagnosis of tissue pathology based on the characteristic molecularvibrational spectra of the tissue. The biomolecular changes in the cellularand sub-cellular levels developing in abnormal tissue, including a majorityof cancer forms, manifest themselves in different optical signatures, whichcan be detected in infrared microspectroscopy. This report has two parts. Inthe first part, we report studies on normal, premalignant (polyp) andmalignant human colonic tissues from three patients with different stages ofmalignancy. Our method is based on microscopic infrared study (FTIR-microscopy)of thin tissue specimens and a direct comparison with traditional histopathologicalanalysis, which serves as a gold reference. The limited dataavailable showed normal colonic tissue has a stronger absorption thanpolypoid tumor and cancerous types over a wide region in a total of 100measurements. Detailed analysis showed that there is a significant decreasein total carbohydrate, phosphate and possibly creatine contents for polyp andcancerous tissue types in comparison to the controls. The same trend is maintainedin seven other patients studied. The second part consists of an analysis showingthe influence of various independent factors such as age, sex and grade of malignancy. Ourpreliminary results suggest that among the above three factors, age and gradeof malignancy have significant effect on the metabolites level, but sex has onlyminor effect on the measured spectra. Initial results on Linear DiscriminantAnalysis (LDA) showed good classification between normal and malignant cellsof human colonic tissues.     

Succession of hide–seek and pursuit–evasion at heterogeneous locations

Many interactions between searching agents and their elusive targets are composed of a succession of steps, whether in the context of immune systems, predation or counterterrorism. In the simplest case, a two-step process starts with a search-and-hide phase, also called a hide-and-seek phase, followed by a round of pursuit–escape. Our aim is to link these two processes, usually analysed separately and with different models, in a single game theory context. We define a matrix game in which a searcher looks at a fixed number of discrete locations only once each searching for a hider, which can escape with varying probabilities according to its location. The value of the game is the overall probability of capture after k looks. The optimal search and hide strategies are described. If a searcher looks only once into any of the locations, an optimal hider chooses it''s hiding place so as to make all locations equally attractive. This optimal strategy remains true as long as the number of looks is below an easily calculated threshold; however, above this threshold, the optimal position for the hider is where it has the highest probability of escaping once spotted.     

Boron and Sodium Doping of Polymeric Carbon Nitride Photoanodes for Photoelectrochemical Water Splitting

Polymeric carbon nitride is a promising photoanode material for water-splitting and organic transformation-based photochemical cells. Despite achieving significant progress in performance, these materials still exhibit low photoactivity compared to inorganic photoanodic materials because of a moderate visible light response, poor charge separation, and slow oxidation kinetics. Here, the synthesis of a sodium- and boron-doped carbon nitride layer with excellent activity as a photoanode in a water-splitting photoelectrochemical cell is reported. The new synthesis consists of the direct growth of carbon nitride (CN) monomers from a hot precursor solution, enabling control over the monomer-to-dopant ratio, thus determining the final CN properties. The introduction of Na and B as dopants results in a dense CN layer with a packed morphology, better charge separation thanks to the in situ formation of an electron density gradient, and an extended visible light response up to 550 nm. The optimized photoanode exhibits state-of-the-art performance: photocurrent densities with and without a hole scavenger of about 1.5 and 0.9 mA cm⁻² at 1.23 V versus reversible hydrogen electrode (RHE), and maximal external quantum efficiencies of 56% and 24%, respectively, alongside an onset potential of 0.3 V.     

Concentration of Bacillus spores by using silica magnetic particles

Silica particles are mainly used for the concentration of nucleic acid for diagnostic purposes. This is usually done under acidic or chaotropic conditions that will demolish most of the living organisms and prevent the application of other diagnostic tests. Here we describe the development of a method for the capturing and concentration of Bacillus spores using silica magnetic particles to enable fast and sensitive detection. We have shown that capturing various Bacilli spores via silica magnetic particles is limited, with large differences between spore batches (42 +/- 25%). The hydrophobic exosporium layer of spore limits the capture by the hydrophilic silica beads. Partial removal of Bacillus exosporium increases capture efficiency. To increase capturing efficiency without harming the spores' viability, a cationic lipid, didecyldimethylammonium bromide (DDAB), was used as a coat for the negatively charged silica particles. DDAB treatment increased capture efficiency from 42% to more than 90%. Using this method, we were able to capture as few as 100 Bacillus anthracis spores/mL with 90% efficacy. Release of captured spores was achieved by the addition of albumin. The capture and release processes were verified by plating and by flow cytometry using light scatter analysis. The method is simple, efficient, easy to operate, and fast.     

SDS-PAGE under focusing conditions: an electrokinetic transport phenomenon based on charge compensation

A novel method is reported for mass separation of proteins, based on sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE). Unlike conventional SDS-PAGE, in which separation by mass of SDS-laden polypeptide chains is obtained in constant concentration or porosity gradient gels, the present method, called "SDS-PAGE focusing", exploits a "steady-state" process by which the SDS-protein micelles are driven to stationary zones along the migration path against a gradient of positive charges affixed to the neutral polyacrylamide matrix. As the total negative surface charge of such complexes matches the surrounding charge density of the matrix, the SDS-protein complex stops migrating and remains stationary, as typical of steady-state separation techniques. As a result of this mechanism, the proteins are separated in an unorthodox way, with the smaller proteins/peptides staying closer to the application point and larger proteins migrating further down toward the anodic gel end. This results in a positive slope of the Mr vs migration plot, vs a negative slope in conventional SDS-PAGE. Moreover, such a plot is linear (by design), whereas in standard SDS-PAGE it is semi- or even double logarithmic. Particularly advantageous appears the ability of the present method to fine-tune the separation of small-size fragments and tryptic digests, where conventional SDS-PAGE usually fails. Additionally, by exploiting constant plateaus of charges, rather than gradients, it is possible to amplify the separation between species having closely spaced Mr values, down to a limit of approximately 150 Da. This increases the resolution by at least 1 order of magnitude as compared with standard SDS-PAGE, where for a proper separation of two adjacent species, an Mr increment of approximately 3000 Da is needed.     

Two-dimensional elastoplasticity: Approximation by mixed finite elements

Two-dimensional elastoplastic problems are used to assess the performance of a family of mixed finite elements in the non-linear regime. In particular, four-node bilinear quadrilateral elements that exhibit high accuracy in coarse meshes are used to simulate plane stress, plane strain, axisymmetric and (shear-deformable) plate bending problems. The excellent performance of these elements is demonstrated with a number of discriminating examples selected from the literature. In addition, agreement is observed in the limit load predicted by the axisymmetric solid and plate bending elements.     

Noisy image restoration by cost function minimization

Implementation of a new approach to the nonlinear noisy image restoration problem, which is feasible for large images, is described. The approach is based on a vector space representation of images and on using the conjugate gradient algorithm to solve a least squares minimization problem. Computer simulations yield good results with relatively little computational cost.     

The effect of precursory cooling on rewetting of a slab

The Dua and Tien (1976) model for the rewetting of a slab with precursory cooling is solved exactly by separation of variables. The solution for the rewetting velocity is found to agree very well with a Wiener Hopf technique solution to this model by the author. Rewetting rates predicted by the approximate solution of Dua and Tien are found to agree with the present solution for small Peclet numbers, while underpredicting them for large Peclet numbers. Theoretical quench front velocities compare favorably with experimental data for copper quenched by liquid nitrogen. Precursory cooling is shown to be able to greatly increase the rewetting velocity, in particular for cases of high flow rates, while neglecting it in modelling may result in much too low quench velocities, as compared to experimental measurements.     

A closer look at termination

Summary Several methods for proving that computer programs terminate are presented and illustrated. The methods considered involve (a) using the no-infinitely-descending-chain property of well-founded sets (Floyd's approach), (b) bounding a counter associated with each loop (loop approach), (c) showing that some exit of each loop must be taken (exit approach), or (d) inducting on the structure of the data domain (Burstall's approach). We indicate the relative merit of each method for proving termination or non-termination as an integral part of an automatic verification system.