Histone Methylation Marks on Circulating Nucleosomes as Novel Blood-Based Biomarker in Colorectal Cancer

Circulating nucleic acids (CNAs) are under investigation as a liquid biopsy in cancer as potential non-invasive biomarkers, as stable structure in circulation nucleosomes could be valuable sources for detection of cancer-specific alterations in histone modifications. Our interest is in histone methylation marks with a focus on colorectal cancer, one of the leading cancers respective the incidence and mortality. Our previous work included the analysis of trimethylations of lysine 9 on histone 3 (H3K9me3) and of lysine 20 on histone 4 (H4K20me3) by chromatin immuno- precipitation-related PCR in circulating nucleosomes. Here we asked whether global immunologic measurement of histone marks in circulation could be a suitable approach to show their potential as biomarkers. In addition to H3K9me3 and H4K20me3 we also measured H3K27me3 in plasma samples from CRC patients (n = 63) and cancer free individuals (n = 40) by ELISA-based methylation assays. Our results show that of three marks, the amounts of H3K27me3 (p = 0.04) and H4K20me3 (p < 0.001) were significantly lower in CRC patients than in healthy controls. For H3K9me3 similar amounts were measured in both groups. Areas under the curve (AUC) in receiver operating characteristic (ROC) curves indicating the power of CRC detection were 0.620 for H3K27me3, 0.715 for H4K20me3 and 0.769 for the combination of both markers. In conclusion, findings of this preliminary study reveal the potential of blood-based detection of CRC by quantification of histone methylation marks and the additive effect of the marker combination.     

Potential of in-field and low temperature drying for reducing chlorophyll contents in canola (Brassica napus L)

The presence of green seeds in canola arises primarily from the common practice of swathing the crop prematurely in order to hasten the harvesting process and reduce the shattering losses. The purpose of this study was to determine the effects of plant maturity, swathing and duration of swathing on moisture and chlorophyll contents of canola seeds (Brassica napus L cv Westar), and to determine the effect of canola conditioning with air at 25·C and 90% RH on chlorophyll content. A standing crop of canola with 50% to 10% (w/w) seed moisture content was sampled at regular intervals in two consecutive harvest years (1989 and 1990). Canola was also swathed at three different stages of maturity, and seeds were checked for chlorophyll at 2-3 day intervals and compared with chlorophyll contents of seed from standing crop. Samples were conditioned in a thin layer with air at 25·C and 90% RH for 24 h, and chlorophyll was determined before and after conditioning. The chlorophyll of seeds decreased exponentially with a decrease in moisture content. Conditioning canola seeds decreased chlorophyll content by an average of 16% (SD = ± 12%).     

Screening mixtures for biological activity by NMR

Development of the new drugs often involves the screening of compound libraries for biological activity. Currently, the biologically active component can only be identified if either a pure compound is being tested or if the components of a mixture are spatially separated, for example, on beads. Here, we present an NMR technique based on the transferred nuclear Overhauser effect (transfer NOE) that allows identification and structural characterization of biologically active molecules from a mixture. As an example we demonstrate that from mixtures of oligosaccharides only alpha-L-Fuc-(1-->6)-beta-D-GlcNAc-OMe binds to Aleuria aurantia agglutinin. The sign of transferred NOEs is opposite to NOEs of small molecules that do not bind to the protein and, thus, an unequivocal identification of molecules with binding activity is possible. Normally, the selection of bound ligands is further facilitated in that the absolute intensity of transfer NOEs is much greater than that of NOEs of non-binding molecules. In addition, transfer NOEs provide information on the three-dimensional structure of the ligands in the bound state. Therefore, measuring transfer NOEs of mixtures of small molecules in the presence of large molecules, like proteins, should significantly enhance the options for screening mixtures of compounds for biological activity.     

Electromagnetic scattering by a straight thin wire

The traveling-wave energy, which multiply diffracts on a straight thin wire, is represented as a sum of terms, each with a distinct physical meaning, that can be individually examined in the time domain. Expressions for each scattering mechanism on a straight thin wire are cast in the form of four basic electromagnetic wave concepts: diffraction, attachment, launch, and reflection. Using the basic mechanisms from P.Ya. Ufimtsev (1962), each of the scattering mechanisms is included into the total scattered field for the straight thin wire. Scattering as a function of angle and frequency is then compared to the moment-method solution. These analytic expressions are then extended to a lossy wire with a simple approximate modification using the propagation velocity on the wire as derived from the Sommerfeld wave on a straight lossy wire. Both the perfectly conducting and lossy wire solutions are compared to moment-method results, and excellent agreement is found. As is common with asymptotic solutions, when the electrical length of wire is smaller than 0.2 λ the results lose accuracy. The expressions modified to approximate the scattering for the lossy thin wire yield excellent agreement even for lossy wires where the wire radius is on the order of skin depth     

Natural convective flow between an array of vertical cylinders

The natural-convectioe flow of a viscous and heat-conducting fluid in systems of cylinders, arranged vertically in regular patterns, is studied. The aim of the study is to determine the conditions of stability of the fluid when heated from below and cooled from above. In particular, the influence of geometry and thermal properties of the system on the free stationary convection are studied. A new way of calculating the free convection threshold is proposed. The final results are analytical formulas for determining the critical Rayleigh numbers for the studied forms of flow and graphs, showing the dependency of these numbers on the geometrical parameters of arrays.