Synthesis and Metabolic Fate of 4-Methylthiouridine in Bacterial tRNA

Ribonucleic acid (RNA) is central to many life processes and, to fulfill its function, it has a substantial chemical variety in its building blocks. Enzymatic thiolation of uridine introduces 4-thiouridine (s⁴U) into many bacterial transfer RNAs (tRNAs), which is used as a sensor for UV radiation. A similar modified nucleoside, 2-thiocytidine, was recently found to be sulfur-methylated especially in bacteria exposed to antibiotics and simple methylating reagents. Herein, we report the synthesis of 4-methylthiouridine (ms⁴U) and confirm its presence and additional formation under stress in Escherichia coli. We used the synthetic ms⁴U for isotope dilution mass spectrometry and compared its abundance to other reported tRNA damage products. In addition, we applied sophisticated stable-isotope pulse chase studies (NAIL-MS) and showed its AlkB-independent removal in vivo. Our findings reveal the complex nature of bacterial RNA damage repair.     

Development of an expert system for preliminary risk assessment of existing concrete dams

The paper presents an expert system to assist in the field inspection of existing concrete dams within the context of a preliminary risk assessment. The paper describes the engineering knowledge and reasoning required to conduct a deterministic field evaluation of the structural stability of the dam. The symptoms and failure modes identified by the expert system along with the required knowledge and procedures are organized in a structured knowledge tree. The instantiation of the frames and firing of the rules for each consultation traces part of the inference tree contained in the structured knowledge tree. Interaction between nearly decomposable problems are executed with metaknowledge procedures, shared rule groups, and active values. Examples are provided.     

Accumulation and desorption of free radicals in emulsion copolymerization

The emulsion copolymerization of styrene with acrylonitrile, seeded on a polybutadiene support and initiated either potassium persulfate or γ-rays has been studied. The original technique of support activation consists of two steps: the start of the copolymerization in the presence of a small fraction of monomers, followed by the addition of the rest of monomers, which leads to a great increase in the reaction rate. The experimental data provide evidence for a new mechanism that takes into account the desorption–reentry of the free oligoradicals into another particle, their transfer to the polybutadiene support, which results in the accumulation of trapped free radicals. As a consequence of free radicals' accumulation, the overall copolymerization rate increases. The accumulation as well as the desorption processes place this type of copolymerization far from Smith–Ewart theory case II.     

Use of proximity effect in iridium-gold superconducting phase transition thermometers

We have studied the proximity effect in bilayers of thin films of iridium covered by gold. These structures were evaporated onto sapphire single crystals for use as phase transition thermometers in cryogenic particle detectors. By varying the thicknesses of the iridium and gold layers, we achieved critical temperatures as low as 33 mK. The critical temperature of the bilayers is lower than predicted by the theory of de Gennes-Werthamer, but adding a free parameter to the theory allows good agreement. The transitions of the bilayers typically had widths of a few mK, with the narrowest reaching 0.2 mK, and were always sharper than those of pure iridium films evaporated simultaneously.     

RDS/peripherin gene mutations are frequent causes of central retinal dystrophies

Patients from 76 independent families with various forms of mostly central retinal dystrophies were screened for mutations in the RDS/peripherin gene by means of SSCP analysis and direct DNA sequencing. Two nonsense mutations (Gln239ter, Tyr285ter), five missense mutations (Arg172Trp, Lys197Glu, Gly208Asp, Trp246Arg, Ser289Leu), and one single base insertion (Gly208insG), heterozygous in all cases, were detected. Only one of these mutations, Arg172Trp, has been reported previously. Cosegregation of the mutation with the disease phenotype could be established in selected families. Other missense mutations were excluded from a panel of 55-75 control subjects. The patients showed remarkable variation in phenotype and disease expression not only between cases with different mutations but also between affected members of the same family. This study indicates that RDS/peripherin mutations are a frequent cause of various types of central retinal dystrophies and that the RDS/peripherin gene exhibits a broad spectrum of allelic mutations. Comparative analysis of known mutations allowed us to hypothesise that the deleterious effect of RDS/peripherin gene mutations is the result of different molecular mechanisms.     

Observation of Unconventional Dynamics of Domain Walls in Uniaxial Ferroelectric Lead Germanate

Application of scanning probe microscopy techniques such as piezoresponse force microscopy (PFM) opens the possibility to re‐visit the ferroelectrics previously studied by the macroscopic electrical testing methods and establish a link between their local nanoscale characteristics and integral response. The nanoscale PFM studies and phase field modeling of the static and dynamic behavior of the domain structure in the well‐known ferroelectric material lead germanate, Pb₅Ge₃O₁₁, are reported. Several unusual phenomena are revealed: 1) domain formation during the paraelectric‐to‐ferroelectric phase transition, which exhibits an atypical cooling rate dependence; 2) unexpected electrically induced formation of the oblate domains due to the preferential domain walls motion in the directions perpendicular to the polar axis, contrary to the typical domain growth behavior observed so far; 3) absence of the bound charges at the 180° head‐to‐head (H–H) and tail‐totail (T–T) domain walls, which typically exhibit a significant charge density in other ferroelectrics due to the polarization discontinuity. This strikingly different behavior is rationalized by the phase field modeling of the dynamics of uncharged H–H and T–T domain walls. The results provide a new insight into the emergent physics of the ferroelectric domain boundaries, revealing unusual properties not exhibited by conventional Ising‐type walls.     

Shop-floor resource virtualization layer with private cloud support

Large scale emergence of mature cloud solutions, ranging from software-as-a-service based solutions for business management, to very sophisticate private cloud solutions; offer the building blocks for constructing extremely flexible enterprise systems that can respond to environmental changes with great agility. Manufacturing enterprises need to adopt these new technologies to advance in a new era of mass customization where flexibility, scalability and agility are the differentiating factors. In this context, this paper introduces the virtualized MES and shop floor architecture as an intermediate layer in the manufacturing stack and discusses the advantages offered by this approach for manufacturing enterprises. A classification of MES and shop floor devices is presented focusing on the virtualization techniques suitable for each device type, considering the level of distributed intelligence and the virtualization overhead. Shop floor virtualization through shop floor profiles is presented and discussed underlying the flexibility of the solution. A pilot multi-agent implementation for virtual shop floor configuration based on the CoBASA reference architecture is presented and discussed. The shop floor profiles which define the virtual layout and mappings of the robotized manufacturing system are also provided in this context. The pilot implementation using six Adapt robots and a IBM CloudBurst 2.1 private cloud, is described and virtualization overhead in terms of event propagation delays is measured and presented in several scenarios of resource workload collocation on physical cloud blades     

Arterial input function in a dedicated slice for cerebral perfusion measurements in humans

Object

We aimed to modify our previously published method for arterial input function measurements for evaluation of cerebral perfusion (dynamic susceptibility contrast MRI) such that it can be applied in humans in a clinical setting.

Materials and methods

Similarly to our previous work, a conventional measurement sequence for dynamic susceptibility contrast MRI is extended with an additional measurement slice at the neck. Measurement parameters at this slice were optimized for the blood signal (short echo time, background suppression, magnitude and phase images). Phase-based evaluation of the signal in the carotid arteries is used to obtain quantitative arterial input functions.

Results

In all pilot measurements, quantitative arterial input functions were obtained. The resulting absolute perfusion parameters agree well with literature values (gray and white matter mean values of 46 and 24 mL/100 g/min, respectively, for cerebral blood flow and 3.0% and 1.6%, respectively, for cerebral blood volume).

Conclusions

The proposed method has the potential to quantify arterial input functions in the carotid arteries from a direct measurement without any additional normalization.