Molecular cloning and characterization of a thermostable α-amylase exhibiting an unusually high activity

An α-amylase gene was cloned from the thermophilic bacterium Bacillus subtilis isolated from Indonesian oil palm shell waste. The gene expressed an extracellular enzyme. Optimal hydrolysis conditions for the enzyme were 70°C and pH 6.0. The specific activity of the enzyme was 16.0 kU per mg of protein, which was higher than for other thermostable amylases. Hydrolytic products of the enzyme using starch and glycogen were mainly maltohexaose and maltopentaose. The enzyme had a K _m value of 0.099 mg/mL for amylopectin, more than 10 times lower than for amylose. The catalytic efficiency of the enzyme using amylopectin was 39,200 mL/mg·s and was 3,270 mL/mg·s using amylose. The enzyme liquefied corn starch at pH 5.0, which was successfully converted to glucose using commercial glucoamylase and pullulanase without pH adjustment. The enzyme has advantages for industrial applications.     

A new document representation using term frequency and vectorized graph connectionists with application to document retrieval

This paper presents a new document representation with vectorized multiple features including term frequency and term-connection-frequency. A document is represented by undirected and directed graph, respectively. Then terms and vectorized graph connectionists are extracted from the graphs by employing several feature extraction methods. This hybrid document feature representation more accurately reflects the underlying semantics that are difficult to achieve from the currently used term histograms, and it facilitates the matching of complex graph. In application level, we develop a document retrieval system based on self-organizing map (SOM) to speed up the retrieval process. We perform extensive experimental verification, and the results suggest that the proposed method is computationally efficient and accurate for document retrieval.     

Plasma-assisted molecular beam epitaxy of ZnO on in-situ grown GaN/4H-SiC buffer layers

Plasma-assisted molecular beam epitaxy (MBE) was used to grow ZnO(0001) layers on GaN(0001)/4H-SiC buffer layers deposited in the same growth chamber equipped with both N- and O-plasma sources. The GaN buffer layers were grown immediately before initiating the growth of ZnO. Using a substrate temperature of 440°C–445°C and an O₂ flow rate of 2.0–2.5 sccm, we obtained ZnO layers with smooth surfaces having a root-mean-square roughness of 0.3 nm and a peak-to-valley distance of 3 nm shown by AFM. The FWHM for X-ray rocking curves recorded across the ZnO(0002) and ZnO(101ˉ5) reflections were 200 and 950 arcsec, respectively. These values showed that the mosaicity (tilt and twist) of the ZnO film was comparable to corresponding values of the underlying GaN buffer. It was found that a substrate temperature >450°C and a high Zn-flux always resulted in a rough ZnO surface morphology. Reciprocal space maps showed that the in-plane relaxation of the GaN and ZnO layers was 82.3% and 73.0%, respectively and the relaxation occurred abruptly during the growth. Room-temperature Hall-effect measurements showed that the layers were intrinsically n-type with an electron concentration of 10¹⁹ cm^–3 and a Hall mobility of 50 cm²·V^–1·s^–1.     

In situ optical variability and relationships in the Santa Barbara Channel: implications for remote sensing

Relationships and variability of bio-optical properties in coastal waters are investigated. Optical proxies indicate that these coastal waters are optically complex and highly variable and are categorized as follows: (1) relatively clear and dominated by high index of refraction, biogenic particles, (2) more turbid, consisting of mostly inorganic particles and little phytoplankton, (3) extremely turbid with high concentrations of inorganic particles, and (4) more turbid and dominated by biogenic particles. We present a method, alternative to traditional remote-sensing algorithms, of classifying coastal waters [the Spectral Angle Mapper (SAM)] and utilize the SAM to successfully isolate plume conditions in time series of downwelling irradiance and total absorption coefficient. We conclude with a discussion of the use of the SAM for coastal management operations.     

Crystallite sizes and lattice parameters of nano-biomagnetite particles

Average crystallite sizes of microbially synthesized pure, metal-, and lanthanide-substituted magnetite (bio-magnetite) were determined for a variety of incubation times and temperatures, substitutional elements and amounts, bacterial species, and precursor types. The intriguing difference between nanoparticle bio-magnetite and chemically synthesized magnetite (chem-magnetite) was that powder X-ray diffraction (XRD) data showed that the bio-magnetite exhibited slightly smaller lattice parameters, however, Raman Spectroscopy exhibited no difference in Fe-O bonding. These results indicate that bio-magnetite likely exhibits a more compact crystal structure with less uncoordinated iron on the surface suppressing negative pressure effects. The bio-magnetite with decreased lattice parameters could have potential technological advantages over current commercial chemically synthesized magnetites.     

Experimental investigation of adverse effect of frost formation on microchannel evaporators,part 1: Effect of fin geometry and environmental effects

This study experimentally investigated the frost growth on louvered folded fins in microchannel heat exchangers when used in outdoor air-source heat pump systems. The effects of surface temperature, fin geometries, and air environmental conditions were studied. The overall aim was to isolate and quantify the effect of geometry from surface temperature effects. Experimental data of frost weight, local frost thickness, air pressure drop across the coils, time of frost–defrost cycles and heat transfer rates were recorded. Data showed that the frosting time and the frost growth rates depended mainly on the local fin surface temperature. Lower fin density was beneficial because it delayed the blockage of the air flow. The fin length and fin depth had minor effects on frosting performance. The air humidity had a fairly significant effect on rate of frost formation while air velocity seemed to have a small effect on the frost growth rate.     

The Role of Aluminum in the Detonation and Post‐Detonation Expansion of Selected Cast HMX‐Based Explosives

In order to improve understanding of how aluminum contributes in non‐ideal explosive mixtures, cast‐cured formulations have been analyzed in a series of cylinder tests and plate‐pushing experiments. This study describes the contribution of 15 % aluminum (median size of 3.2 μm) vs. lithium fluoride (an inert substitute for aluminum; <5 μm) in cast‐cured HMX formulations in different temporal regimes. Small cylinder tests were performed to analyze the detonation and wall velocities (1–20 μs) for these formulations. Near‐field blast effects of 58 mm diameter spherical charges were measured at 152 mm and 254 mm using steel plate acceleration. Pressure measurements at 1.52 m gave information about free‐field pressure at several milliseconds. While the observed detonation velocities for all formulations were within uncertainty, significantly higher cylinder wall velocities, plate velocities, and pressures were observed for the aluminum formulations at ≥2 μs. Additionally, hydrocode calculations were performed to determine how non‐ideal behavior affected the plate test results. Collectively, this work gives a clearer picture of how aluminum contributes to detonation on timescales from 1 μs to about 2 ms, and how the post‐detonation energy release contributes to wall velocities and blast effects. The experiments indicate that significant aluminum reactions occur after the CJ plane, and continue to contribute to expansion at late times.     

Incorporation of a Probabilistic Monotonic Strain Energy Analysis to a Lifting Method

The proposed work analyzes the possibility of improving the capabilities of an energy-based fatigue life prediction method. The improvement being addressed is regarding the variation of empirical monotonic strain energy density calculations and the effects on the energy-based fatigue life prediction capability. Since the prediction method was developed from the concept that the strain energy accumulated during both monotonic failure and an entire fatigue process are equal, meaning the strain energy accumulated during monotonic failure is a physical damage quantity, it was important to understand the variation of monotonic strain energy density. The process for incorporating this variation into the prediction method explores a probabilistic, Three-Sigma analysis that is applicable for all deterministic methods of measuring experimental monotonic strain energy density. The accuracy of the probabilistic energy-based lifing method was admirably assessed by comparison with experimental fatigue life results, between 10³ and 10⁵ cycles, conducted on Titanium 6Al–4V specimens at room temperature.     

A 3D-QSAR Study of Analogs of (Z)-5-Decenyl Acetate, A Pheromone Component of the Turnip Moth, Agrotis segetum

The methodology of three-dimensional quantitative structure-activity relationships (3D-QSAR) has been employed to develop a quantitative model for the relationship between single-cell activities for a large set of analogs of (Z)-5-decenyl acetate, a pheromone component of the turnip moth, Agrotis segetum, and the structural characteristics of the analogs. The method of partial least squares (PLS) projections to latent structures has been used to delineate the relationships between measured activities and chemical structures. The training set includes 42 compounds, and a test set of seven molecules has been employed to assess the predictivity of the model. The model derived is able to calculate the activities of the seven test compounds with an average unsigned error of 0.3, close to the experimental error. Contour maps of regression-like coefficients from transformed PLS components display electronic and nonbonded features of high importance for the observed variation in the activities of compounds in the training set. The contours for the nonbonded (van der Waals) field support previous conclusions that the interaction between the pheromone component and its receptor is characterized by a high steric complementarity.