Comparison of methods for rapid evaluation of lifetimes of exponential decays

For evaluating exponential luminescence decays, there are a variety of computational rapid integral methods based on the areas of the decay under different binned intervals. Using both Monte Carlo methods and experimental photon counting data, we compare the standard rapid lifetime determination method (SRLD), optimized rapid lifetime determination methods (ORLD), maximum likelihood estimator method (MLE), and the phase plane method (PPM). The different techniques are compared with respect to precision, accuracy, sensitivity to binning range, and the effect of baseline interference. The MLE provides the best overall precision, but requires 10 bins and is sensitive to very small uncorrected baselines. The ORLD provides nearly as good precision using only two bins and is much more immune to uncompensated baselines. The PPM requires more bins than the MLE and has systematic errors, but is largely resistant to baseline issues. Therefore, depending on the data acquisition method and the number of bins that can be readily employed, the ORLD and MLE are the preferred methods for reasonable signal-to-noise ratios.     

Dosimetry at 28 keV synchrotron radiation for cell irradiations

Accurate dosimetry is a prerequisite for reliable comparisons between radiobiological irradiation experiments. Parameters affecting the determination of absorbed dose to cells in the shape of a small cell pellet in a centrifuge tube, irradiated by 28 keV mono-energetic photons from a synchrotron, were investigated. Thermoluminescent dosimeter (TLD), diode and ion chambers were utilized to monitor the irradiations. The distribution of the absorbed dose and such parameters as scatter, attenuation and interface dosimetry in the target, which influence the dose, were studied. A method for inter-calibrations of two different calibration sources by using TLD and TLD readers is given. Characteristics of the TLD, that is, fading, supralinearity, energy response, self-attenuation and mini-dosimetry were considered for the dosimetry. A method for correcting photon fluence attenuation in cylindrical TLDs is presented. The study shows that the absorbed dose to cells irradiated at low photon energy at a synchrotron irradiation facility can, using accurate dosimetry protocol, be correctly and reproducibly determined.     

The evaluation of the 1980 decennial census

The authors describe the procedures that are being used to evaluate the 1980 U.S. census. Topics covered include the purposes of evaluation, studies of variance, studies of bias, and studies of alternate procedures     

Using a system-on-a-chip implantable device to filter circulating infected cells in blood or lymph

This paper describes a system on a chip (SoC) that makes use of nanoscale cellular adhesion mechanisms in an integrated electronic microsystem to filter infected cells from blood or lymph. An example of a human immunodeficiency virus-specific SoC is explored in depth. Such systems work in vivo, and blood and lymph are filtered on a continuous basis. With the intelligence on the chip, captured cells can be identified and lyzed, expelled, or otherwise acted upon. These types of systems transfer the burden of research from traditional chemotherapy to bioengineering and system design.     

Isolation,characterization, and quantitative analysis of Microviridin J,a new Microcystis metabolite toxic to Daphnia

This paper describes the purification and characterization of microviridin J, a newly discovered metabolite of Microcystis that causes a lethal molting disruption in Daphnia spp., upon ingestion of living cyanobacterial cells. Microviridin J consists of an acetylated chain of 13 amino acids arranged in three rings and two side chains. Unlike other known isoforms of microviridin, microviridin J contains arginine that imparts a unique solution conformation characterized by proximal hydrophobic interactions between Arg and other regions of the molecule. This eventually results in the formation and stabilization of an additional ring system. Microviridin J potently inhibits porcine trypsin, bovine chymotrypsin, and daphnid trypsin-like proteases. The activity against trypsin is most likely due to Arg and its distinctive conformational interactions. Overall, the data presented for microviridin J emphasize once again the ability of cyanobacteria to produce numerous and potent environmental toxins.     

Activation detection in fMRI using a maximum energy ratio statistic obtained by adaptive spatial filtering

An adaptive spatial filtering method is proposed that takes into account contextual information in fMRI activation detection. This filter replaces the time series of each voxel with a weighted average of time series of a small neighborhood around it. The filter coefficients at each voxel are derived so as to maximize a test statistic designed to indicate the presence of activation. This statistic is the ratio of the energy of the filtered time series in a signal subspace to the energy of the residuals. It is shown that the filter coefficients and the maximum energy ratio can be found through a generalized eigenproblem. This approach equates the filter coefficients to the elements of an eigenvector corresponding to the largest eigenvalue of a specific matrix, while the largest eigenvalue itself becomes the maximum energy ratio that can be used as a statistic for detecting activation. The distribution of this statistic under the null hypothesis is derived by a nonparametric permutation technique in the wavelet domain. Also, in this paper we introduce a new set of basis vectors that define the signal subspace. The space spanned by these basis vectors covers a wide range of possible hemodynamic response functions (HRF) and is applicable to both event related and block design fMRI signal analysis. This approach circumvents the need for a priori assumptions about the exact shape of the HRF. Resting-state experimental fMRI data were used to assess the specificity of the method, showing that the actual false-alarm rate of the proposed method is equal or less than its expected value. Analysis of simulated data and motor task fMRI datasets from six volunteers using the method proposed here showed an improved sensitivity as compared to a conventional test with a similar statistic applied to spatially smoothed data.     

Multiresolution fMRI activation detection using translation invariant wavelet transform and statistical analysis based on resampling

A new method is proposed for activation detection in event-related functional magnetic resonance imaging (fMRI). The method is based on the analysis of selected resolution levels (a subspace) in translation invariant wavelet transform (TIWT) domain. Using a priori knowledge about the activation signal and trends, we analyze their power in different resolution levels in TIWT domain and select an optimal set of resolution levels. A randomization-based statistical test is then applied in the wavelet domain for activation detection. This approach suppresses the effects of trends and enhances the detection sensitivity. In addition, since TIWT is insensitive to signal translations, the power analysis is robust with respect to signal shifts. The randomization test alleviates the need for assumptions about fMRI noise. The method has been applied to simulated and experimental fMRI datasets. Comparisons have been made between the results of the proposed method, a similar method in the time domain and the cross-correlation method. The proposed method has shown superior sensitivity compared to the other methods.     

Catheter for diagnosis and therapy with infrared evanescent waves

We have developed an optical delivery device (catheter) capable of transmitting broadband infrared light (IR wavelengths from 2 to 10 microm) for both diagnostic and therapeutic applications. The catheter is 1.68 mm in outer diameter and 1 m in length. It consists of two hollow glass waveguides coupled to a high-refractive-index optic tip. The IR light interacts with the tissue at the optic-tissue interface to measure the spectral signatures and perform therapy on the tissue at this interface. Fourier-transform IR spectrophotometer light is used to obtain the spectral signatures, and an IR free-electron laser (FEL) is used to study the therapeutic interaction of evanescent waves with the tissue. We present our catheter design; preliminary IR spectroscopy of aorta, blood, fatty tissue, and muscle; and IR FEL therapy on atheroslerotic aorta.     

Sensitivity of the backscattering Mueller matrix to particle shape and thermodynamic phase

The Mueller matrix (M) corresponding to the phase matrix in the backscattering region (scattering angles ranging from 175 degrees to 180 degrees) is investigated for light scattering at a 0.532-microm wavelength by hexagonal ice crystals, ice spheres, and water droplets. For hexagonal ice crystals we assume three aspect ratios (plates, compact columns, and columns). It is shown that the contour patterns of the backscattering Mueller matrix elements other than M11, M44, M14, and M41 depend on particle geometry; M22 and M33 are particularly sensitive to the aspect ratio of ice crystals. The Mueller matrix for spherical ice particles is different from those for nonspherical ice particles. In addition to discriminating between spherical and nonspherical particles, the Mueller matrix may offer some insight as to cloud thermodynamic phase. The contour patterns for large ice spheres with an effective size of 100 microm are substantially different from those associated with small water droplets with an effective size of 4 microm.     

Self-referencing intensity measurements based on square-wave gated phase-modulation fluorimetry

An adaptation of square-wave gated phase-modulation (GPM) fluorimetry allows for self-referenced intensity measurements without the complexity of dual excitation or dual emission wavelengths. This AC technique utilizes square-wave excitation, gated detection, a reference emitter, and a sensor molecule. The theory and experimental data demonstrating the effectiveness and advantages of the adapted GPM scheme are presented. One component must have an extremely short lifetime relative to the other. Both components are affected identically by changes in intensity of the excitation source, but the sensor intensity also depends on the concentration of the analyte. The fluctuations of the excitation source and any optical transmission changes are eliminated by ratioing the sensor emission to the reference emission. As the concentration of the analyte changes, the corresponding sensor intensity changes can be quantified through several schemes including digitization of the signal and digital integration or AC methods. To measure pH, digital methods are used with Na3[Tb(dpa)3] (dpa = 2,6-pyridinedicarboxylic acid) as the long-lived reference molecule and fluorescein as the short-lived sensor molecule. Measurements from the adapted GPM scheme are directly compared to conventional ratiometric measurements. Good agreement between the data collection methods is demonstrated through the apparent pKa. For the adapted GPM measurements, conventional measurements, and a global fit the apparent pKa values agree within less than 2%. A key element of the adapted GPM method is its insensitivity to fluctuations in the source intensity. For a roughly 8-fold change in the excitation intensity, the signal ratio changes by less than 3%.