Label-free comparative analysis of proteomics mixtures using chromatographic alignment of high-resolution muLC-MS data

Label-free relative quantitative proteomics is a powerful tool for the survey of protein level changes between two biological samples. We have developed and applied an algorithm using chromatographic alignment of microLC-MS runs to improve the detection of differences between complex protein mixtures. We demonstrate the performance of our software by finding differences in E. coli protein abundance upon induction of the lac operon genes using isopropyl beta-D-thiogalactopyranoside. The use of our alignment gave a 4-fold decrease in mean relative retention time error and a 6-fold increase in the number of statistically significant differences between samples. Using a conservative threshold, we have identified 5290 total microLC-MS regions that have a different abundance between these samples. Of the detected difference regions, only 23% were mapped to MS/MS peptide identifications. We detected 74 proteins that had a greater relative abundance in the induced sample and 21 with a greater abundance in the uninduced sample. We have developed an effective tool for the label-free detection of differences between samples and demonstrate an increased sensitivity following chromatographic alignment.     

CONCURRENT FLCW RICE DRYING

ABSTRACT

Long- and medium-grain rice were dried in a commercial multi-stage concurrent-flow dryer. Drying air temperatures varied fran 82°C to 177°C. Over six points of moisture were removed in one dryer pass without affecting the rice head-yield. Energy consumption of the dryers was half that of conventional rice dryers. Simulation played a major role in the design of the mUlti-stage concurrent-flow rice dryers.     

The Effects of Nanomaterials as Endocrine Disruptors

In recent years, nanoparticles have been increasingly used in several industrial, consumer and medical applications because of their unique physico-chemical properties. However, in vitro and in vivo studies have demonstrated that these properties are also closely associated with detrimental health effects. There is a serious lack of information on the potential nanoparticle hazard to human health, particularly on their possible toxic effects on the endocrine system. This topic is of primary importance since the disruption of endocrine functions is associated with severe adverse effects on human health. Consequently, in order to gather information on the hazardous effects of nanoparticles on endocrine organs, we reviewed the data available in the literature regarding the endocrine effects of in vitro and in vivo exposure to different types of nanoparticles. Our aim was to understand the potential endocrine disrupting risks posed by nanoparticles, to assess their underlying mechanisms of action and identify areas in which further investigation is needed in order to obtain a deeper understanding of the role of nanoparticles as endocrine disruptors. Current data support the notion that different types of nanoparticles are capable of altering the normal and physiological activity of the endocrine system. However, a critical evaluation of these findings suggests the need to interpret these results with caution since information on potential endocrine interactions and the toxicity of nanoparticles is quite limited.     

Chemical synthesis of the RGD-protein decorsin: Pro-->Ala replacement reduces protein thermostability

Decorsin is a 39-residue polypeptide chain, crosslinked by three disulfide bridges, that strongly inhibits platelet aggregation. We report the chemical synthesis and characterization of analogs of decorsin with the aim of investigating the role of proline residues in protein structure, stability and biological activity. Decorsin analogs have been synthesized in which one (P23A and P24A decorsin) or two (P23,24A decorsin) proline residues have been substituted by alanine. The crude synthetic polypeptides were purified by reversed-phase HPLC in their reduced form and allowed to refold oxidatively to their disulfide-crosslinked species. The homogeneity of the synthetic mini-proteins, and also the correct pairing of the three disulfide bridges, were established by a number of analytical criteria, including fingerprinting analysis of the refolded synthetic analogs by using thermolysin and proteinase K as proteolytic enzymes. Replacement of proline by alanine results in a significant and cumulative decrease of the high thermal stability (Tm 74 degrees C) of native decorsin. The mono-substituted analogs display a Tm of 66-67 degrees C, while the double-substituted analog a Tm of 50 degrees C. On the other hand, the overall secondary and tertiary structures were not affected by the Pro-->Ala exchanges, as judged from circular dichroism measurements. Platelet aggregation assays established that the proline substitutions do not impair significantly the biological activity of decorsin. The results of this study clearly indicate that proline residues contribute significantly to the protein thermal stability. Our results are in line with the 'proline rule', previously advanced for explaining the unusual thermal stability of thermophilic enzymes, which usually show an enhanced content of proline residues with respect to their mesophilic counterparts.     

Numerical study of two-phase flow patterns in the gas channel of PEM fuel cells with tapered flow field design

In this study the air–water two-phase flow in a tapered channel of a PEMFC was numerically simulated using the volume of fluid (VOF) method. In particular, a 3D mathematical model of the fuel cell flow channel was used to obtain a reliable evaluation of the fuel cell performance for different taper angles and different temperatures and to calculate the total amount of water produced. This information was then used as boundary conditions to simulate the two-phase flow in the cell channel through a 2D VOF model. Typical operating conditions were assigned and the numerical mesh was constructed to represent the real fuel cell configuration. The results show that tapering the channel downstream enhances the water removal due to increased airflow velocity. In the rectangular channel no film formation is noted with a marked predominance of slug flow. In contrast, as the taper angle is increased the predominant two-phase flow pattern is film flow. Finally many contact angles have been used to simulate the effect of the hydrophobicity of a GDL surface on the motion of the water. As the hydrophobicity of a GDL surface is decreased the presence of film is more evident even for less tapered channels.     

Study of the effects of flow channel with non-uniform cross-sectional area on PEMFC species and heat transfer

In this study it is investigated the performance of a proton exchange membrane fuel cell. The results show that an inclination of 0.75° in the flow channel can effectively increase the current density generated by almost 9.5% and the maximum power density by 8%. With the use of more tapered channels the distribution of the reactants in the porous media leads to a better effective oxygen distribution, affecting directly the heat transfer inside the cell. In contrast, the pressure drop in the flow channel increase by factors of approximately 2 and 3.5 for angles of 0.5° and 0.75°, respectively.     

Enhancement of hydrogen production rate by high biomass concentrations of Thermotoga neapolitana

The objective of this study was to enhance the hydrogen production rate of dark fermentation in batch operation. For the first time, the hyperthermophilic pure culture of Thermotoga neapolitana cf. Capnolactica was applied at elevated biomass concentrations. The increase of the initial biomass concentration from 0.46 to 1.74 g cell dry weight/L led to a general acceleration of the fermentation process, reducing the fermentation time of 5 g glucose/L down to 3 h with a lag phase of 0.4 h. The volumetric hydrogen production rate increased from 323 (±11) to 654 (±30) mL/L/h with a concomitant enhancement of the biomass growth and glucose consumption rate. The hydrogen yield of 2.45 (±0.09) mol H₂/mol glucose, the hydrogen concentration of 68% in the produced gas and the composition of the end products in the digestate, i.e. 62.3 (±2.5)% acetic acid, 23.5 (±2.9)% lactic acid and 2.3 (±0.1)% alanine, remained unaffected at increasing biomass concentrations.     

Effects of instructions and stimulus representation on selective learning in children.

Studied the effects of 2 types of incidental learning paradigms and the influence of different kinds of stimulus relationships on 168 1st and 6th graders' selective learning processes. Eight pairs of colored pictures were presented in each experimental condition. Incidental instructions were varied with respect to the absence vs presence of a concurrent intentional task. Within both instructional conditions, pairs of stimuli were either conceptually related, perceptually related, or unrelated. Free recall and pair retention were measured. Developmental similarities in selective learning processes were evidenced by younger and older children's equivalent patterns of stimulus selection. These patterns were significantly related to the type of incidental paradigm and stimulus relationship presented. Absolute amount of retention was positively related to age. It is concluded that patterns of stimulus selection and amount of learning reflect different processes and that both should serve as a criteria for developmentally studying selectivity. (25 ref) (PsycINFO Database Record (c) 2010 APA, all rights reserved)