Expanded analysis of benzo[a]pyrene-DNA adducts formed in vitro and in mouse skin: their significance in tumor initiation

This paper reports expanded analyses of benzo[a]pyrene (BP)-DNA adducts formed in vitro by activation with horseradish peroxidase (HRP) or 3-methylcholanthrene-induced rat liver microsomes and in vivo in mouse skin. The adducts formed by BP are compared to those formed by BP-7,8-dihydrodiol and anti-BP diol epoxide (BPDE). First, activation of BP by HRP produced 61% depurinating adducts: 7-(benzo[a]pyrene-6-yl)guanine (BP-6-N7Gua), BP-6-C8Gua, BP-6-N7Ade, and the newly identified BP-6-N3Ade. As a standard, the last adduct was synthesized along with BP-6-N1Ade by electrochemical oxidation of BP in the presence of adenine. Second, identification and quantitation of BP-DNA adducts formed by microsomal activation of BP showed 68% depurinating adducts: BP-6-N7Ade, BP-6-N7Gua, BP-6-C8Gua, BPDE-10-N7Ade, and the newly detected BPDE-10-N7Gua. The stable adducts were mostly BPDE-10-N2dG (26%), with 6% unidentified. BPDE-10-N7Ade and BPDE-10-N7Gua were the depurinating adducts identified after microsomal activation of BP-7, 8-dihydrodiol or direct reaction of anti-BPDE with DNA. In both cases, the predominant adduct was BPDE-10-N2dG (90% and 96%, respectively). Third, when mouse skin was treated with BP for 4 h, 71% of the total adducts were the depurinating adducts BP-6-N7Gua, BP-6-C8Gua, BP-6-N7Ade, and small amounts of BPDE-10-N7Ade and BPDE-10-N7Gua. These newly detected depurinating diol epoxide adducts were found in larger amounts when mouse skin was treated with BP-7,8-dihydrodiol or anti-BPDE. The stable adduct BPDE-10-N2dG was predominant, especially with anti-BPDE. Comparison of the profiles of DNA adducts formed by BP, BP-7,8-dihydrodiol, and anti-BPDE with their carcinogenic potency indicates that tumor initiation correlates with the levels of depurinating adducts, but not with stable adducts. Furthermore, the levels of depurinating adducts of BP correlate with mutations in the Harvey-ras oncogene in DNA isolated from mouse skin papillomas initiated by this compound [Chakravarti et al. (1995) Proc. Natl. Acad. Sci. U.S.A. 92, 10422-10426]. The depurinating adducts formed by BP in mouse skin appear to be the key adducts leading to tumor initiation.     

Multiresolution in astronomical image processing: A general framework

Multiresolution transforms, including a wavelet transform, are applied simage visualization, image restoration, filtering and compression, × object detection. Variance stabilization is used, when appropriate, cater for common astronomical image noise models. We discuss idation of such methods in the case of astronomical image processing. A range of examples illustrate the effectiveness of this aproach in handling point source and extended astronomical objects.     

Production and Immunochemical Characterization of a High-Affinity Monoclonal Antibody Specific for 7-(Benzo[a]pyren-6-yl)guanine (Bp-6-N7GUA), a Depurinating DNA Adduct of Benzo[a]pyrene

Molecular dosimetry of depurinating DNA adducts of benzo[a]pyrene (BP) offers a promising new approach to determining risk of PAH-induced cancer. Depurinating adducts are the predominant form of BP-induced DNA damage, are excreted in urine and, importantly, are linked to cancer initiation. We have produced a monoclonal antibody (MAb) with high specific affinity for BP-6-N7Gua, a major depurinating DNA adduct of BP, and have developed a sensitive and specific competitive enzyme-linked immunosorbent assay (ELISA). The I_50S (quantity producing 50% inhibition of MAb binding in the ELISA) of selected BP adducts and metabolites were determined. The results indicated 1) a high degree of discrimination between BP-6-N7Gua (I₅₀=750 fmol) and BP (I₅₀=900,000 fmol), 2) high affinity of the MAb for BP-6-N7Ade (I₅₀=1,500 fmol), another major depurinating DNA adduct, and 3) specific structural requirements for MAb-adduct binding. In addition, the competitive ELISA provided an accurate determination of BP-6-N7Gua added to normal human urine, at a sensitivity of 200 fmol.     

Control of Nanoscale Environment to Improve Stability of Immobilized Proteins on Diamond Surfaces

Immunoassays for detection of bacterial pathogens rely on the selectivity and stability of bio-recognition elements such as antibodies tethered to sensor surfaces. The search for novel surfaces that improve the stability of biomolecules and assay performance has been pursued for a long time. However, the anticipated improvements in stability have not been realized in practice under physiological conditions because the surface functionalization layers on commonly used substrates, silica and gold, are themselves unstable on time scales of days. In this paper, we show that covalent linking of antibodies to diamond surfaces leads to substantial improvements in biological activity of proteins as measured by the ability to selectively capture cells of the pathogenic bacterium Escherichia coli O157:H7 even after exposure to buffer solutions at 37 °C for extended periods of time, approaching 2 weeks. Our results from ELISA, XPS, fluorescence microscopy, and MD simulations suggest that by using highly stable surface chemistry and controlling the nanoscale organization of the antibodies on the surface, it is possible to achieve significant improvements in biological activity and stability. Our findings can be easily extended to functionalization of micro and nanodimensional sensors and structures of biomedical diagnostic and therapeutic interest.     

The undecimated wavelet decomposition and its reconstruction.

This paper describes the undecimated wavelet transform and its reconstruction. In the first part, we show the relation between two well known undecimated wavelet transforms, the standard undecimated wavelet transform and the isotropic undecimated wavelet transform. Then we present new filter banks specially designed for undecimated wavelet decompositions which have some useful properties such as being robust to ringing artifacts which appear generally in wavelet-based denoising methods. A range of examples illustrates the results.     

The Human In Vivo Biomolecule Corona onto PEGylated Liposomes: A Proof‐of‐Concept Clinical Study

The self‐assembled layered adsorption of proteins onto nanoparticle (NP) surfaces, once in contact with biological fluids, is termed the “protein corona” and it is gradually seen as a determinant factor for the overall biological behavior of NPs. Here, the previously unreported in vivo protein corona formed in human systemic circulation is described. The human‐derived protein corona formed onto PEGylated doxorubicin‐encapsulated liposomes (Caelyx) is thoroughly characterized following the recovery of liposomes from the blood circulation of ovarian carcinoma patients. In agreement with previous investigations in mice, the in vivo corona is found to be molecularly richer in comparison to its counterpart ex vivo corona. The intravenously infused liposomes are able to scavenge the blood pool and surface‐capture low‐molecular‐weight, low‐abundance plasma proteins that cannot be detected by conventional plasma proteomic analysis. This study describes the previously elusive or postulated formation of protein corona around nanoparticles in vivo in humans and illustrates that it can potentially be used as a novel tool to analyze the blood circulation proteome.     

The use of nanoclay in preparation of epoxy anticorrosive coatings

Epoxy/clay nanocomposites (NC) have become a very interesting topic among researchers in the past two decades because nanoclays have a positive effect on the mechanical, thermal and especially barrier and anticorrosive performances of the polymers. In this study epoxy NCs and NC-based epoxy coatings were prepared by the solution intercalation method using Cloisite 30B as nanoclay. WAXD and SEM analyses revealed that a mainly exfoliated structure was obtained in epoxy NC with 1 wt% clay content, while higher clay loadings reduced the number of exfoliated clay nanolayers and produced a mainly intercalated structure. EIS, TGA and DMA analyses showed that epoxy NCs with clay content below 5 wt% exhibited increased corrosion stability, thermal stability, glass transition temperature (T_g) and storage modulus (G′), in both glassy and rubbery states due to the nanoscale dispersion of Cloisite 30B and the barrier effect of individual nanolayers. Enhanced mechanical properties were also noticed at higher clay loadings, but the rate of improvement was lower. The highest extent of exfoliation and the most homogeneous macromolecular network was found for NC with 1 wt% of clay, leading to the highest improvement of thermal and anticorrosive properties. The salt spray test results showed that anticorrosive properties of epoxy coatings in the presence of 3 wt% and especially 1 wt% of Cloisite 30B were significantly better, thus indicating that nanoclay efficiently modifies the commercial epoxy coatings.     

Simultaneous pairwise multiple comparison procedures for means when sample sizes are unequal.

Pairwise multiple comparison procedures (MCPs) are appropriate when the behavioral researcher is interested in comparing all possible pairwise mean differences. An exposition of the various simultaneous MCPs is presented that classifies those procedures as either (a) nonrobust to combinations of variance heterogeneity and unequal sample sizes because a pooled within-cell estimate of error variability is used to obtain the standard error of the contrast; or (b) robust to the homogeneity assumption because the standard error of the contrast is obtained via the Behrens-Fisher solution, and various approximate and/or conservative critical values that maintain the overall level of Type I error at "alpha" are used. A numerical example illustrating the latter MCPs is given. A choice among P. A. Games and J. F. Howell's (1976), C. W. Dunnett's (1980), and W. G. Cochran's (1964) procedures is recommended. (27 ref) (PsycINFO Database Record (c) 2010 APA, all rights reserved)     

Automated discrimination of dicentric and monocentric chromosomes by machine learning‐based image processing

Dose from radiation exposure can be estimated from dicentric chromosome (DC) frequencies in metaphase cells of peripheral blood lymphocytes. We automated DC detection by extracting features in Giemsa‐stained metaphase chromosome images and classifying objects by machine learning (ML). DC detection involves (i) intensity thresholded segmentation of metaphase objects, (ii) chromosome separation by watershed transformation and elimination of inseparable chromosome clusters, fragments and staining debris using a morphological decision tree filter, (iii) determination of chromosome width and centreline, (iv) derivation of centromere candidates, and (v) distinction of DCs from monocentric chromosomes (MC) by ML. Centromere candidates are inferred from 14 image features input to a Support Vector Machine (SVM). Sixteen features derived from these candidates are then supplied to a Boosting classifier and a second SVM which determines whether a chromosome is either a DC or MC. The SVM was trained with 292 DCs and 3135 MCs, and then tested with cells exposed to either low (1 Gy) or high (2‐4 Gy) radiation dose. Results were then compared with those of 3 experts. True positive rates (TPR) and positive predictive values (PPV) were determined for the tuning parameter, σ. At larger σ, PPV decreases and TPR increases. At high dose, for σ = 1.3, TPR = 0.52 and PPV = 0.83, while at σ = 1.6, the TPR = 0.65 and PPV = 0.72. At low dose and σ = 1.3, TPR = 0.67 and PPV = 0.26. The algorithm differentiates DCs from MCs, overlapped chromosomes and other objects with acceptable accuracy over a wide range of radiation exposures. Microsc. Res. Tech. 79:393–402, 2016. © 2016 Wiley Periodicals, Inc.