Automatic particle detection in microscopy using temporal correlations

One of the fundamental problems in the analysis of single particle tracking data is the detection of individual particle positions from microscopy images. Distinguishing true particles from noise with a minimum of false positives and false negatives is an important step that will have substantial impact on all further analysis of the data. A common approach is to obtain a plausible set of particles from a larger set of candidate particles by filtering using manually selected threshold values for intensity, size, shape, and other parameters describing a particle. This introduces subjectivity into the analysis and hinders reproducibility. In this paper, we introduce a method for automatic selection of these threshold values based on maximizing temporal correlations in particle count time series. We use Markov Chain Monte Carlo to find the threshold values corresponding to the maximum correlation, and we study several experimental data sets to assess the performance of the method in practice by comparing manually selected threshold values from several independent experts with automatically selected threshold values. We conclude that the method produces useful results, reducing subjectivity and the need for manual intervention, a great benefit being its easy integratability into many already existing particle detection algorithms. Microsc. Res. Tech., 76:997–1006, 2013. © 2013 Wiley Periodicals, Inc.     

Freezing on subcooled surfaces,phenomena, modeling and applications

At the onset of ice nucleation from aqueous solutions on a subcooled solid surface, experiments show that the heat flux across the cooling surface has a steep increase. If scraping action is applied to prevent ice fouling on the cooling surface, high-level heat transfer will continue. In this paper, the following subjects are studied: (1) the time required for ice to cover the unscraped cooling surface; (2) the thermal response of the supercooled solution at the onset of phase change; (3) the heat transfer coefficient on the scraped surface with/without phase change, and (4) the growth kinetics of ice film spreading along the cooling surface. The outcome is applied to improve the design and operation of the scraped surface heat exchange, which is used to produce ice slurry in freeze concentration, desalination or cold storage.     

Conduction in rectangular plates with boundary temperatures specified

Steady-state components of heat conduction solutions may have very slowly convergent series for temperatures and non-convergent heat fluxes for temperature boundary conditions. Previous papers have proposed methods to remove these convergence problems. However, even more effective procedures based on insights of Morse and Feshbach are given herein. In some cases it is possible to replace poorly-convergent or non-convergent series by closed-form algebraic solutions. Examples are given.     

Characterisation of electrical performance of anode supported micro-tubular solid oxide fuel cell with methane fuel

The reduction and operation of Ni–YSZ anode-supported tubular cells on methane fuel is described. Cells were reduced on pure methane from 650 °C to 850 °C, varying reduction time and methane flow rate. The effect on electrochemical performance with methane fuel was then investigated at 850 °C after which temperature-programmed oxidation (TPO) was employed to measure carbon deposition. Results showed that carbon deposition was minimized after certain reduction conditions. The conclusion was that 30 min reduction at 650 °C with 10 ml min⁻¹ methane reduction flow rate led to the highest current output over 1.2 A cm⁻² at 0.5 V when the cell operated at 850 °C between 10 ml min⁻¹ and 12.5 ml min⁻¹ methane running flow rate. From these results, it is evident that solid oxide fuel cell (SOFC) performance can be substantially improved by optimising preparation, reduction and operating conditions without the need for hydrogen.     

Enhanced thermal conductivity oxide nuclear fuels by co-sintering with BeO: II. Fuel performance and neutronics

The fuel rod performance and neutronics of enhanced thermal conductivity oxide (ECO) nuclear fuel with BeO have been compared to those of standard UO₂ fuel. The standards of comparison were that the ECO fuel should have the same infinite neutron-multiplication factor k_inf at end of life and provide the same energy extraction per fuel assembly over its lifetime. The BeO displaces some uranium, so equivalence with standard UO₂ fuel was obtained by increasing the burnup and slightly increasing the enrichment. The COPERNIC fuel rod performance code was adapted to account for the effect of BeO on thermal properties. The materials considered were standard UO₂, UO₂ with 4.0 vol.% BeO, and UO₂ with 9.6 vol.% BeO. The smaller amount of BeO was assumed to provide increases in thermal conductivity of 0, 5, or 10%, whereas the larger amount was assumed to provide an increase of 50%. A significant improvement in performance was seen, as evidenced by reduced temperatures, internal rod pressures, and fission gas release, even with modest (5-10%) increases in thermal conductivity. The benefits increased monotonically with increasing thermal conductivity. Improvements in LOCA initialization performance were also seen. A neutronic calculation considered a transition from standard UO₂ fuel to ECO fuel. The calculation indicated that only a small increase in enrichment is required to maintain the k_inf at end of life. The smallness of the change was attributed to the neutron-multiplication reaction of Be with fast neutrons and the moderating effect of BeO. Adoption of ECO fuel was predicted to provide a net reduction in uranium cost. Requirements for industrial hygiene were found to be comparable to those for processing of UO₂.     

Synthesis of copper-based bulk metallic glasses in the ternary Cu–Mg–Ca system

This paper reports the discovery of novel copper-based bulk metallic glasses free of group IV transition metals (Zr, Hf and Ti) in the Ca–Cu–Mg ternary system. Alloys of compositions ranging from Cu-33–55 at.%, Mg-18–36 at.% and Ca-18–36 at.%, located far from eutectic reactions, were found to exhibit high glass-forming ability (up to 8 mm using conventional copper mold casting), high hardness (up to 328H_V) and low densities (2.9–4.0 g/cm³).     

Analysis and Evaluation of the Dynamic Performance of SMA Actuators for Prosthetic Hand Design

It is widely acknowledged within the biomedical engineering community that shape memory alloys (SMAs) exhibit great potential for application in the actuation of upper limb prosthesis designs. These lightweight actuators are particularly suitable for prosthetic hand solutions. A four-fingered, 12 degree-of-freedom prosthetic hand has been developed featuring SMA bundle actuators embedded within the palmar structure. Joule heating of the SMA bundle actuators generates sufficient torque at the fingers to allow a wide range of everyday tasks to be carried out. Transient characterization of SMA bundles has shown that performance/response during heating and cooling differs substantially. Natural convection is insufficient to provide for adequate cooling during elongation of the actuators. An experimental test-bed has been developed to facilitate analysis of the heat transfer characteristics of the appropriately sized SMA bundle actuators for use within the prosthetic hand design. Various modes of heat sinking are evaluated so that the most effective wire-cooling solution can be ascertained. SMA bundles of varying size will be used so that a generalized model of the SMA displacement performance under natural and forced cooling conditions can be obtained. The optimum cooling solution will be implemented onto the mechanical hand framework in future work. These results, coupled with phenomenological models of SMA behavior, will be used in the development of an effective control strategy for this application in future work.     

The effect of increased interrogation zone,reader antenna polarization and application factors in the performance of UHF RFID tag detection on modified atmosphere packaged meat

The effect of conveyor speed, test sample size, antenna to sample distance, antenna polarization and ideal tag location in relation to the coupling capabilities of ultra‐high frequency radio frequency identification on optimal reader antenna placement were studied. The influence of each individual factor and its interaction was determined using the general linear model analysis of variance. In decreasing order of significance of the variables tested were sample type (F = 4174.40, p < 0.0005), smaller samples preferred for coupling; distance (F = 863.83, p < 0.0005), where distance between sample and antenna should be kept to a minimum; inlay design (F = 167.82, p < 0.0005), where AD‐612 preformed best due to its large antenna area; and reader antenna polarization (F = 149.64, p < 0.0005), where circular polarization preformed better yet comparative advantage decreased with distance. A reader antenna offset of 95 mm, while not significant, (F = 1.73, p = 0.188) tended to decrease coupling capabilities of the system despite increasing the zone of influence. Ideal tag location on sample was found to be on the right, back and front face with y‐orientation proving superior than either x or z. A 190‐mm centre–to‐centre reader antenna offset resulted in a decrease in the average tag detection rate from 62 to 49% highlighting the importance of optimal reader antenna placement which needs to be confirmed if a similar result is to be obtained when a large number of tags are interrogated simultaneously. Copyright © 2010 John Wiley & Sons, Ltd.     

Chemical and Physical Sensing by Organic Field‐Effect Transistors and Related Devices

Organic semiconductor films are susceptible to noncovalent interactions, trapping and doping, photoexcitation, and dimensional deformation. While these effects can be detrimental to the performance of conventional circuits, they can be harnessed, especially in field‐effect architectures, to detect chemical and physical stimuli. This Review summarizes recent advances in the use of organic electronic materials for the detection of environmental chemicals, pressure, and light. The material features that are responsible for the transduction of the input signals to electronic information are discussed in detail.     

Enhancing the carbon sink in European agricultural soils: including trace gas fluxes in estimates of carbon mitigation potential

The possibility that the carbon sink in agricultural soils can be enhanced has taken on great political significance since the Kyoto Protocol was finalised in December 1997. The Kyoto Protocol allows carbon emissions to be offset by demonstrable removal of carbon from the atmosphere. Thus, forestry activities (Article 3.3) and changes in the use of agricultural soils (Article 3.4) that are shown to reduce atmospheric CO₂levels may be included in the Kyoto emission reduction targets. The European Union is committed to a reduction in CO₂ emissions to 92% of baseline (1990) levels during the first commitment period (2008–2012). We have shown recently that there are a number of agricultural land-management changes that show some potential to increase the carbon sink in agricultural soils and others that allow alternative forms of carbon mitigation (i.e. through fossil fuel substitution), but the options differ greatly in their potential for carbon mitigation. The changes examined were, (a) switching all animal manure use to arable land, (b) applying all sewage sludge to arable land, (c) incorporating all surplus cereal straw, (d) conversion to no-till agriculture, (e) use of surplus arable land to de-intensify 1/3 of current intensive crop production (through use of 1/3 grass/arable rotations), (f) use of surplus arable land to allow natural woodland regeneration, and (g) use of surplus arable land for bioenergy crop production. In this paper, we attempt for the first time to assess other (non-CO₂) effects of these land-management changes on (a) the emission of the other important agricultural greenhouse gases, methane and nitrous oxide, and (b) other aspects of the ecology of the agroecosystems. We find that the relative importance of trace gas fluxes varies enormously among the scenarios. In some such as the sewage sludge, woodland regeneration and bioenergy production scenarios, the inclusion of trace gases makes only a small (<10%) difference to the CO₂-C mitigation potential. In other cases, for example the no-till, animal manure and agricultural de-intensification scenarios, trace gases have a large impact, sometimes halving or more than doubling the CO₂-C mitigation potential. The scenarios showing the greatest increase when including trace gases are those in which manure management changes significantly. In the one scenario (no-till) where the carbon mitigation potential was reduced greatly, a small increase in methane oxidation was outweighed by a sharp increase in N₂O emissions. When these land-management options are combined to examine the whole agricultural land area of Europe, most of the changes in mitigation potential are small, but depending upon assumptions for the animal manure scenario, the total mitigation potential either increases by about 20% or decreases by about 10%, shifting the mitigation potential of the scenario from just above the EU's 8% Kyoto emission reduction target (98.9 Tg C y⁻¹) to just below it. Our results suggest that (a) trace gas fluxes may change the mitigation potential of a land management option significantly and should always be considered alongside CO₂-C mitigation potentials and (b) agricultural management options show considerable potential for carbon mitigation even after accounting for trace gas fluxes. This revised version was published online in August 2006 with corrections to the Cover Date.