Protein topology of presenilin 1

Mutations in a gene encoding a multitransmembrane protein, termed presenilin 1 (PS1), are causative in the majority of early-onset cases of AD. To determine the topology of PS1, we utilized two strategies: first, we tested whether putative transmembranes are sufficient to export a protease-sensitive substrate across a lipid bilayer; and second, we examined the binding of antibodies to specific PS1 epitopes in cultured cells selectively permeabilized with the pore-forming toxin, streptolysin-O. We document that the "loop," N-terminal, and C-terminal domains of PS1 are oriented toward the cytoplasm.     

Estimating the uncertainty of modeled carbon sequestration: The GreenCert™ system

The GreenCert? system was developed to help farm and ranch owners to quantify, standardize, pool and market CO₂ emissions offset (sequestration) credits derived from improved rangeland or cropland management. It combines a user-friendly interface with the CENTURY biogeochemical model, a GIS database of soil and climate parameters, and a Monte Carlo-based uncertainty estimation methodology. This paper focuses on uncertainty treatment, discussing sources of error, parameter distributions, and the Monte Carlo randomization approach, culminating in a sensitivity analysis of model parameters.Idealized crop and grazing scenarios were used to evaluate the uncertainty of modeled soil organic carbon stocks and stock changes stemming from variability in site and management parameters. Normalized sensitivity coefficients and an integrated index for relative sensitivity of the model to the ensemble of the tested variables indicate that environmental factors are the most important in determining the actual size of the soil carbon stock, but that management is a much more important determinant of short- to medium-term carbon fluxes. GreenCert? uses the patented C-LOCK^® approach to efficiently limit uncertainty in the most critical phase of the modelling process by maximizing the use of available management information, and quantifies the remaining uncertainty in an unbiased fashion using Monte Carlo parameter randomization.     

A two-layer architecture for economically optimal process control and operation

A two-layer architecture for dynamic real-time optimization (or nonlinear modelpredictive control (NMPC) with an economic objective) is presented, where the solution of the dynamic optimization problem is computed on two time-scales. On the upper layer, a rigorous optimization problem is solved with an economic objective function at a slow time-scale, which captures slow trends in process uncertainties. On the lower layer, a fast neighboring-extremal controller is tracking the trajectory in order to deal with fast disturbances acting on the process. Compared to a single-layer architecture, the two-layer architecture is able to address control systems with complex models leading to high computational load, since the rigorous optimization problem can be solved at a slower rate than the process sampling time. Furthermore, solving a new rigorous optimization problem is not necessary at each sampling time if the process has rather slow dynamics compared to the disturbance dynamics. The two-layer control strategy is illustrated with a simulated case study of an industrial polymerization process.     

Robust resource allocation in a cluster based imaging system

Recently there has been an increased demand for imaging systems in support of high-speed digital printing. The required increase in performance in support of such systems can be accomplished through an effective parallel execution of image processing applications in a distributed cluster computing environment. The output of the system must be presented to a raster based display at regular intervals, effectively establishing a hard deadline for the production of each image. Failure to complete a rasterization task before its deadline will result in an interruption of service that is unacceptable. The goal of this research was to derive a metric for measuring robustness in this environment and to design a resource allocation heuristic capable of completing each rasterization task before its assigned deadline, thus, preventing any service interruptions. We present a mathematical model of such a cluster based raster imaging system, derive a robustness metric for evaluating heuristics in this environment, and demonstrate using the metric to make resource allocation decisions. The heuristics are evaluated within a simulation of the studied raster imaging system. We clearly demonstrate the effectiveness of the heuristics by comparing their results with the results of a resource allocation heuristic commonly used in this type of system.     

Development of a Cloud Trust Label: A Delphi Approach

The purpose of this research is to identify the potential information components of an online, real-time trust label, which is proposed as a communication mechanism to encourage trust in cloud service providers and cloud computing products. An online Delphi process was used with 28 cloud computing experts (including vendors, software providers, and legal and business representatives). The proposed label contains 81 information components, covering the cloud service provider (e.g. physical location, legal jurisdiction), the cloud service itself (e.g. data location, security, backup, certification), and a historical service-level summary (e.g. uptime data, support response times). The potential benefits of such a label to encourage trustworthiness perceptions and trust behaviors in the cloud computing environment are explored. Limitations of the study are highlighted, and further research studies are suggested to test the concept of the label and to refine the components of the label itself.     

Modeling the glucose regulatory system in extreme preterm infants

Background

Premature infants represent a significant proportion of the neonatal intensive care population. Blood glucose homeostasis in this group is often disturbed by immaturity of endogenous regulatory systems and the stress of their condition. Hypo- and hyperglycemia are frequently reported in very low birth weight infants, and more mature infants often experience low levels of glycemia. A model capturing the unique fundamental dynamics of the neonatal glucose regulatory system could be used to develop better blood glucose control methods.

Methods

A metabolic system model is adapted from adult critical care to the unique physiological case of the neonate. Integral-based fitting methods were used to identify time-varying insulin sensitivity and non-insulin mediated glucose uptake profiles. The clinically important predictive ability of the model was assessed by assuming insulin sensitivity was constant over prediction intervals of 1, 2 and 4 h forward and comparing model-simulated versus actual clinical glucose values for all recorded interventions. The clinical data included 1091 glucose measurements over 3567 total patient hours, along with all associated insulin and nutritional infusion data, for N = 25 total cases. Ethics approval was obtained from the Upper South A Regional Ethics Committee for this study.

Results

The identified model had a median absolute percentage error of 2.4% [IQR: 0.9-4.8%] between model-fitted and clinical glucose values. Median absolute prediction errors at 1-, 2- and 4-h intervals were 5.2% [IQR: 2.5-10.3%], 9.4% [IQR: 4.5-18.4%] and 13.6% [IQR: 6.3-27.6%] respectively.

Conclusions

The model accurately captures and predicts the fundamental dynamic behaviors of the neonatal metabolism well enough for effective clinical decision support in glycemic control. The adaptation from adult to a neonatal case is based on the data from the literature. Low prediction errors and very low fitting errors indicate that the fundamental dynamics of glucose metabolism in both premature neonates and critical care adults can be described by similar mathematical models.     

Innovations in Individual Feature History Management—The Significance of Feature-based Temporal Model

A feature relies on three dimensions (space, theme, and time) for its representation. Even though spatiotemporal models have been proposed, they have principally focused on the spatial changes of a feature. In this paper, a feature-based temporal model is proposed to represent the changes of both space and theme independently. The proposed model modifies the ISO’s temporal schema and adds new explicit temporal relationship structure that stores temporal topological relationship with the ISO’s temporal primitives of a feature in order to keep track feature history. The explicit temporal relationship can enhance query performance on feature history by removing topological comparison during query process. Further, a prototype system has been developed to test a proposed feature-based temporal model by querying land parcel history in Athens, Georgia. The result of temporal query on individual feature history shows the efficiency of the explicit temporal relationship structure.