Conformational analyses and docking studies of a series of 5-nitrofuran- and 5-nitrothiophen-semicarbazone derivatives in three possible binding sites of trypanothione and glutathione reductases

To explore three possible binding sites of trypanothione and glutathione reductase, namely, the active, the dimer interface and the coenzyme NADPH binding site, a series of eight compounds, nitrofurans and nitrothiophenes derivatives, were docked, using their crystallographic and modeled conformations. Docking results showed that, for both families and both enzymes, compounds are more likely to bind in the interface site, even though there is some probability of binding in the active site. These studies are in agreement with experimental data, which suggest that these class of compounds can act either as uncompetitive or mixed type inhibitors, and also with the finding that there is an alpha-helix which connects the active with the interface site, thus allowing charge transference between them.     

Effect of diacetyl piquerol on H+-ATPase activity of microsomes fromIpomoea purpurea

The effect of an allelopathic compound, diacetyl-piquerol on the H⁺ -ATPase activity of the microsomal fraction from the radicles of a common weedIpomoea purpurea was studied. The diacetyl-piquerol inhibited the germination and radicle growth fromI. purpurea; the radicle growth was increasingly inhibited (10% to 100%) as piquerol concentrations were raised (10 M to 1000 M). The H⁺-ATPase activity was inhibited (48%) by 500 M diacetyl-piquerol, and this inhibition was higher in plasma membrane ATPase (67.2%) than in tonoplast membrane ATPase (31.4%). Additional studies of the precise physiological mechanisms of interference caused by allelopathic compounds are needed.This study was sponsored by Project PCECCCNA-050954 of Consejo Nacional de Ciencia y Tecnología (CONACyT).     

mfERG_LAB: Software for processing multifocal electroretinography signals

The multifocal electroretinography technique consists of performing sectorized light excitation of the retina and capturing the resulting evoked potential. This provides functional localized information about the state of the retinal neurons. Analysis of multifocal electroretinography signals can be used for diagnosing different types of optic neuropathies (glaucomatous, demyelinating and ischemic ethiology). In order to obtain a reliable diagnosis, it is necessary to apply advanced processing algorithms (morphological, frequency and time-frequency analysis, etc.) to the multifocal electroretinography signal. This paper presents a software application developed in MATLAB(?) (MathWorks Inc., MA) designed to perform advanced multifocal electroretinography signal analysis and classification. This intuitive application, mfERG_LAB, is used to plot the signals, apply various algorithms to them and present the data in an appropriate format. The application's computational power and modular structure make it suitable for use in clinical settings as a powerful and innovative diagnostic tool, as well as in research and teaching settings as a means of assessing new algorithms.     

Online motion recognition using an accelerometer in a mobile device

This paper introduces a new method to implement a motion recognition process using a mobile phone fitted with an accelerometer. The data collected from the accelerometer are interpreted by means of a statistical study and machine learning algorithms in order to obtain a classification function. Then, that function is implemented in a mobile phone and online experiments are carried out. Experimental results show that this approach can be used to effectively recognize different human activities with a high-level accuracy.     

Brazilian articles in international journals on Limnology

Summary  We assessed the contribution of Brazilian limnologists (freshwater ecologists) in international journals in the period 1970-2004. Brazilian contribution was low and regular in the 1970's, but increased steeply after 1980 with no signs of stabilization until the present. Articles authored by Brazilians tend to be less cited than articles authored by non-Brazilians, although this difference is reduced in co-authored articles with international researchers.  Brazilian articles are not distributed homogenously among the sub-areas of Limnology, but present some biases that can be explained by intellectual legacy. Brazil has invested since the 1970's in establishing postgraduate courses in Brazil and in the last years has turned the focus to a better qualification of these courses. We believe these are the main reasons for the conspicuous development of Brazilian Limnology.     

Second-Order Stiffness Matrix and Loading Vector of a Beam-Column with Semirigid Connections on an Elastic Foundation

The second-order stiffness matrix and corresponding loading vector of a prismatic beam–column subjected to a constant axial load and supported on a uniformly distributed elastic foundation (Winkler type) along its span with its ends connected to elastic supports are derived in a classical manner. The stiffness coefficients are expressed in terms of the ballast coefficient of the elastic foundation, applied axial load, support conditions, bending, and shear deformations. These individual parameters may be dropped when the appropriate effect is not considered; therefore, the proposed model captures all the different models of beams and beam–columns including those based on the theories of Bernoulli–Euler, Timoshenko, Rayleigh, and bending and shear.The expressions developed for the load vector are also general for any type or combinations of transverse loads including concentrated and partially nonuniform distributed loads. In addition, the transfer equations necessary to determine the transverse deflections, rotations, shear, and bending moments along the member are also developed and presented.     

Stabilization of electromechanical systems via interconnection and damping assignment

In this article, we propose a general controller structure for asymptotic position regulation of electromechanical systems derived using the Interconnection and Damping Assignment Passivity‐Based Control methodology recently proposed in the literature. The controller is applicable to arbitrary fully actuated electromechanical systems with linear magnetic materials consisting of inductances, permanent magnets, and one mechanical co‐ordinate. We assume linear magnetic materials and fully actuated electrical dynamics; however, no restrictions are imposed on the particular form of the parameters that define the system dynamics, i.e. the inductance matrix, the magnetic coupling or the potential energy function. This allows us to treat—in a unified framework and without any additional simplifying assumptions—very diverse applications, including magnetic suspensions, and stepper and permanent magnet synchronous motors. Instrumental for our developments is the inclusion of ‘virtual’ couplings between the electrical and the mechanical subsystem, which is naturally suggested in this control methodology. Copyright © 2003 John Wiley & Sons, Ltd.     

Cathodoluminescence study of semiconductor oxide micro- and nanostructures grown by vapor deposition

Nano- and microstructures of SnO(2), In(2)O(3) and ZnO have been grown during thermal treatment of compacted powders under argon flow. Indium-doped SnO(2) tube-shaped structures with rectangular cross-section are obtained by adding a fraction of In(2)O(3) to the starting SnO(2) powder. In-rich nanoislands were found to grow on some edges of the tubes. ZnO nanostructures doped with Sn or Eu were grown by adding SnO(2) and Eu(2)O(3) powder, respectively, to the ZnO precursor powder. All the samples have been characterized by the emissive and cathodoluminescence (CL) modes of scanning electron microscopy. CL images from SnO(2):In and In(2)O(3):Sn tubes and islands show a higher emission from the Sn-rich structures related to oxygen deficiency. CL of doped ZnO enables to detect the presence of dopant in specific regions or structures. CL appears to be a useful technique to study optical and electronic properties of semiconductor oxide nanostructures.     

Towards the Search for Potential Biomarkers in Osteosarcoma: State-of-the-Art and Translational Expectations

Osteosarcoma represents a rare cause of cancer in the general population, accounting for <1% of malignant neoplasms globally. Nonetheless, it represents the main cause of malignant bone neoplasm in children, adolescents and young adults under 20 years of age. It also presents another peak of incidence in people over 50 years of age and is associated with rheumatic diseases. Numerous environmental risk factors, such as bone diseases, genetics and a history of previous neoplasms, have been widely described in the literature, which allows monitoring a certain group of patients. Diagnosis requires numerous imaging tests that make it possible to stratify both the local involvement of the disease and its distant spread, which ominously determines the prognosis. Thanks to various clinical trials, the usefulness of different chemotherapy regimens, radiotherapy and surgical techniques with radical intent has now been demonstrated; these represent improvements in both prognosis and therapeutic approaches. Osteosarcoma patients should be evaluated in reference centres by multidisciplinary committees with extensive experience in proper management. Although numerous genetic and rheumatological diseases and risk factors have been described, the use of serological, genetic or other biomarkers has been limited in clinical practice compared to other neoplasms. This limits both the initial follow-up of these patients and screening in populations at risk. In addition, we cannot forget that the diagnosis is mainly based on the direct biopsy of the lesion and imaging tests, which illustrates the need to study new diagnostic alternatives. Therefore, the purpose of this study is to review the natural history of the disease and describe the main biomarkers, explaining their clinical uses, prognosis and limitations.     

Alteration of Fatty Acid Profile in Fragile X Syndrome

Fragile X Syndrome (FXS) is the most prevalent monogenic cause of Autism Spectrum Disorders (ASDs). Despite a common genetic etiology, the affected individuals display heterogenous metabolic abnormalities including hypocholesterolemia. Although changes in the metabolism of fatty acids (FAs) have been reported in various neuropsychiatric disorders, it has not been explored in humans with FXS. In this study, we investigated the FA profiles of two different groups: (1) an Argentinian group, including FXS individuals and age- and sex-matched controls, and (2) a French-Canadian group, including FXS individuals and their age- and sex-matched controls. Since phospholipid FAs are an indicator of medium-term diet and endogenous metabolism, we quantified the FA profile in plasma phospholipids using gas chromatography. Our results showed significantly lower levels in various plasma FAs including saturated, monosaturated, ω-6 polyunsaturated, and ω-3 polyunsaturated FAs in FXS individuals compared to the controls. A decrease in the EPA/ALA (eicosapentaenoic acid/alpha linoleic acid) ratio and an increase in the DPA/EPA (docosapentaenoic acid/eicosapentaenoic acid) ratio suggest an alteration associated with desaturase and elongase activity, respectively. We conclude that FXS individuals present an abnormal profile of FAs, specifically FAs belonging to the ω-3 family, that might open new avenues of treatment to improve core symptoms of the disorder.