Automated single nucleotide polymorphism typing using bead array in capillary tube

A low-cost and simple on-site technique for genotyping single nucleotide polymorphisms (SNPs) was developed. The technique is based on allele-specific primer PCR and the recently developed bead arrays in a single tip technique. The performance of the method was verified by genotyping four SNPs that correlate with cardiovascular diseases.     

Role of transverse temperature gradients in the generation of lamellar eutectic solidification patterns

In directional solidification, a sample is pulled in an externally imposed temperature gradient. When the pulling direction and the temperature gradient are not perfectly aligned, a transverse temperature gradient is generated in the sample. We investigate the dynamics of lamellar eutectic patterns, both by experimental observations and by numerical simulations, and find that it is dramatically affected by a transverse gradient. Whereas, in its absence, the labyrinth patterns that are formed in the initial stage of solidification persist over the entire duration of the experiments, a transverse temperature gradient induces a drift of the pattern which rapidly generates a regular array of lamellae. The drift speed is found to be consistently larger than expected from the normal growth hypothesis, both in simulations and experiments.     

Poroelastic behaviour of a water-saturated limestone

This paper presents the results of an experimental study carried out on a porous, water-saturated limestone. First, a set of poroelastic parameters is obtained from a wide range of experiments (drained, undrained, pore pressure loading and unjacketed tests) conducted on the same sample at the same stress state. A “null” test, inspired from unsaturated soil testing, is added to confirm the previous results, in particular the value of the Biot coefficient. Then, the variation of the measured parameters between samples is investigated. Finally, the influence of the stress state is studied in the framework of semilinear poroelasticity. Several expressions are compared to model the evolution of the drained bulk modulus as a function of Terzaghi's effective stress.     

A framework for local and regional energy system integration between industry and municipalities—Case study UPM-Kymmene Kaukas

The integration of different energy systems, e.g., industrial and municipal, is potentially important for the efficient utilization of energy. It is important that the tools for analysing this type of integration can handle the energy systems on different levels, e.g., regional, site, plant and process levels. In this work, a framework for investigating the cost-efficient integration of large-scale energy systems is presented and tested at the UPM-Kymmene Kaukas pulp and paper plant and in the municipality of Lappeenranta, Finland. In addition to the different levels, the framework also aims to take into account several sub-problems, e.g., fuel logistic, optimal heat exchanger network and overall efficiency versus flexibility. The case in question shows that the presented framework can be used as a systematic tool for analysing the potential of integrating large energy systems and that it is able to handle both the synthesis of flexible heat exchanger networks and analyse the cost-efficiency of changes to the existing systems.     

Flow through a convergence. Part 1: Critical conditions for unstable flow

The critical conditions leading to fracture in elongation and different types of flow instabilities were examined in uniaxial elongation and in a capillary rheometer equipped with dies having different entry profiles. Either ductile or brittle fracture may be observed, ductile being related to necking of material. The critical stress approach was used to predict fracture in elongation. All linear polymers studied in this work exhibited ductile fracture in uniaxial elongation, but the transition to brittle fracture is discussed in relation to existing experiments with other materials. In a ductile fracture regime, critical stress and work both increase with an increasing rate of deformation, whereas in a brittle regime the critical values remain constant. The converging flow studies indicated that two types of flow instability that have been previously related to each other, namely, pressure oscillations and voltions distortions, are of different origins. The critical flow rate for pressure oscillations is independent of entry profile, and the origin for this type of instability lies along the wall of the capillary. On the other hand, the critical flow rate for volume distortions increased with a decreasing entry angle, indicating that volume distortions are not a consequence of pressure oscillation, nor are their origin at the capillary wall. Numerical simulations were used to determine the stress profiles within the flow, and it was shown that the onset of volume distortions is directly related to the magnitude of elongational stress and work, and may therefore be considered to be caused by fracture in elongation. In dies with 90° entry profile, volume distortions were observed simultaneously with pressure oscillations, making it difficult to distinguish between the two phenomena.     

Estimating Overcomplete Independent Component Bases for Image Windows

Estimating overcomplete ICA bases for image windows is a difficult problem. Most algorithms require the estimation of values of the independent components which leads to computationally heavy procedures. Here we first review the existing methods, and then introduce two new algorithms that estimate an approximate overcomplete basis quite fast in a high-dimensional space. The first algorithm is based on the prior assumption that the basis vectors are randomly distributed in the space, and therefore close to orthogonal. The second replaces the conventional orthogonalization procedure by a transformation of the marginal density to gaussian.     

Flow through a convergence. Part 2: Mixing of high viscosity ratio polymer blends

Dispersive mixing of high viscosity ratio blends was studied in a converging flow using a capillary rheometer equipped with dies having different entry profiles. Three inhomogeneous bimodal polyolefin blends, with stress‐dependent viscosity ratios ranging from 8 to 450, were used in this work. Such magnitudes of viscosity ratio indicate that the dispersed droplets can be mixed only in an elongational flow field. The mixing efficiency was found to be dependent on both the profile of the convergence and flow rate. At the lowest flow rates, the dispersive mixing efficiency was very low, but it increased with an increasing flow rate until a profile‐dependent maximum. This maximum mixing efficiency was observed prior to fracture of the matrix material, after which the efficiency decreased. Stress and deformation fields within different profiles were estimated by numerical simulation using the K‐BKZ equation, and the results were used to interpret experimental results. The dispersive mixing efficiency was found to be proportional to the maximum elongational stress within the converging section, and to the length of the region where the critical conditions for elastic fracture of droplet material were met. It is shown that the dispersive mixing mechanism in high viscosity ratio blends is mainly dictated by elastic fracture of the droplet, and hence is applicable over a wide range of polymer blending processes.     

Molecular-biological approaches to studying gene expression during regeneration

This paper constitutes a review of the methodical approaches allowing analysis of the mechanisms underlying development and differentiation. Progress in investigation of the mechanisms underlying embryogenesis is related to the discovery of genic families in the Drosophila genome, which are responsible for different periods of embryogenesis. The true revolution in studies of developmental mechanisms began with the application of molecular-genetic methods for analysis of Drosophila mutant lines. The clarification and analysis of the genes controlling regeneration is one of the most effective paths toward an understanding of the mechanisms underlying regeneration. No mutations affecting regeneration are, and the development of alternative (i.e., not based on mutation analysis) methods of discovery of the genes controlling regeneration is necessary for investigation of the genetic mechanisms of regeneration. The advantages and drawbacks of the two main approaches for discovery of the genes controlling regeneration are considered. The first approach is based on the production of a bank of sequences expressed in the regenerating structures and subsequent screening of the bank by the known probes. This approach also involves analysis of the structure, function, and expression pattern of the obtained homologs. The second approach is based on subtractive hybridization, which allows identification of the genes specifically expressed in the regenerating structures. This approach was made it possible to identify, for the first time, new genes specifically expressed during lens and retina regeneration in amphibians.     

Effect of A-site metal on methane combustion on 2% Pd / AMn1-x Fe x O3 (A = Ba, La, Pr; x = 0.4, 0.6, 1) perovskites

Barium, lanthanum, and praseodymium perovskites were prepared by malic acid complexation. Surface areas of the La and Pr perovskites were between 17.1 and 21.6 m² g⁻¹. The moderate low surface areas (5.7 m² g⁻¹) observed for corresponding barium perovskites were due to the high calcination temperatures. The calcination temperature also affected the shapes and sizes of the perovskite particles. According to SEM images the nanoparticles of the La and Pr perovskites were spherical, whereas those of barium perovskites were flakes. The conversion of methane increased in the order of A-site metal Ba < Pr < La. The CH₄ conversion after SO₂ treatment correlated with size of the perovskite particles: the smaller the particles the better the activity. The highest methane conversion after SO₂ treatment was achieved with lanthanum perovskite with B-site metal combination Mn_0.4Fe_0.6.     

Photocatalytic degradation of phenol in aqueous solution by rare earth-doped SnO2 nanoparticles

The influence of heterogeneous semiconductors on the photodegradation of phenol in water was investigated using doped tin dioxide (SnO₂) nanoparticles. Photocatalysts of SnO₂ were synthesized with lanthanum (La), cerium (Ce), and neodymium (Nd) dopants. These photocatalysts were synthesized from tin tetrachloride by sol–gel method with different dopant concentrations, and its photocatalytic degradation was investigated up to 0.8 % under UV-A light in aqueous suspensions. The photocatalytic oxidation reactions were studied by varying photocatalyst composition, light intensity, reaction time, pH of the reaction medium, and phenol concentration. It was found that the photocatalytic activity of rare earth-doped SnO₂ for phenol decomposition under UV light irradiation was considerably higher than that of pure SnO₂ nanoparticles. The experimental results also indicate that more than 95 % phenol was effectively oxidized in the presence of an aqueous suspension of La: SnO₂ nanoparticles within 120 min of UV light irradiation.