Lung nodules detection using semantic segmentation and classification with optimal features

Neural Computing and Applications - Lung cancer is a deadly disease if not diagnosed in its early stages. However, early detection of lung cancer is a challenging task due to the shape and size of...     

Laser-induced fluorescence visualization of ion transport in a pseudo-porous capacitive deionization microstructure

In this paper, a microfluidic experimental set-up is introduced to study the ionic transport in an artificial capacitive deionization (CDI) cell. CDI is a promising desalination technique, which relies on the application of an external electric field and high surface area porous electrodes for ion separation and storage. Photolithography and deep reactive ion etching were used to fabricate a micro-CDI channel with pseudo-porous electrodes on a silicon-on-insulator substrate. Laser-induced fluorescence was performed using cationic Sulforhodamine B (SRB) fluorescent dye to measure ion concentration within the bulk solution and more importantly, within the porous electrodes during the desalination process, with an average normalized root mean square deviation of 8.2 %. Using this set-up, electromigration of ions within the electrode was visualized and the effect of applied electric potential on bulk solution concentration distribution is quantified. In addition, SRB and Fluorescein were used together to visualize anion and cation concentrations simultaneously. The method presented in this study can be used for solution concentrations up to approximately 0.7 mM. The ionic concentration profiles obtained by this approach can be used to test and validate the existing electrosorption models, and pseudo-porous electrodes can be modified to observe the effects of pore size, shape and distribution on electrosorption performance. Furthermore, with proper modifications, the microfabricated structure and experimental set-up can be used for CDI-on-a-chip applications and bio-separation devices.     

Image blur and energy broadening effects in XPEEM

We report image blurring and energy broadening effects in energy-filtered XPEEM when illuminating the specimen with soft X-rays at high flux densities. With a flux of 2×10¹³ photons/s, the lateral resolution in XPEEM imaging with either core level or secondary electrons is degraded to more than 50 nm. Fermi level broadening up to several hundred meV and spectral shift to higher kinetic energies are also systematically observed. Simple considerations suggest that these artifacts result from Boersch and Loeffler effects, and that the electron-electron interactions are strongest in the initial part of the microscope optical path. Implications for aberration corrected instruments are discussed.     

Adaptive three-dimensional cellular genetic algorithm for balancing exploration and exploitation processes

This paper presents a new adaptive algorithm that aims to control the exploration/exploitation trade-off dynamically. The algorithm is designed based on three-dimensional cellular genetic algorithms (3D-cGAs). In this study, our methodology is based on the change in the global selection pressure induced by dynamic tuning of the local selection rate. The parameter tuning of the local selection method is a way to define the global selection pressure. A diversity speed measure is used to guide the algorithm. Therefore, the integration of existing techniques helps in achieving our aims. A benchmark of well-known continuous test functions and real world problems was selected to investigate the effectiveness of the algorithm proposed. In addition, we provide a comparison between the proposed algorithm and other static and dynamic algorithms in order to study the different effects on the performance of the algorithms. Overall, the results show that the proposed algorithm provides the most desirable performance in terms of efficiency, efficacy, and speed for most problems considered. The results also confirm that problems of various characteristics require different selection pressures, which are difficult to be identified.     

Who is LB1? Discriminant analysis for the classification of specimens

Many problems in paleontology reduce to finding those features that best discriminate among a set of classes. A clear example is the classification of new specimens. However, these classifications are generally challenging because the number of discriminant features and the number of samples are limited. This has been the fate of LB1, a new specimen found in the Liang Bua Cave of Flores. Several authors have attributed LB1 to a new species of Homo, H. floresiensis. According to this hypothesis, LB1 is either a member of the early Homo group or a descendent of an ancestor of the Asian H. erectus. Detractors have put forward an alternate hypothesis, which stipulates that LB1 is in fact a microcephalic modern human. In this paper, we show how we can employ a new Bayes optimal discriminant feature extraction technique to help resolve this type of issues. In this process, we present three types of experiments. First, we use this Bayes optimal discriminant technique to develop a model of morphological (shape) evolution from Australopiths to H. sapiens. LB1 fits perfectly in this model as a member of the early Homo group. Second, we build a classifier based on the available cranial and mandibular data appropriately normalized for size and volume. Again, LB1 is most similar to early Homo. Third, we build a brain endocast classifier to show that LB1 is not within the normal range of variation in H. sapiens. These results combined support the hypothesis of a very early shared ancestor for LB1 and H. erectus, and illustrate how discriminant analysis approaches can be successfully used to help classify newly discovered specimens.     

A new approach based on a discrete hidden Markov model using the Rocchio algorithm for the diagnosis of heart valve diseases

Abstract: Application of the Doppler ultrasound technique in the diagnosis of heart diseases has been increasing in the last decade since it is non‐invasive, practicable and reliable. In this study, a new approach based on the discrete hidden Markov model (DHMM) is proposed for the diagnosis of heart valve disorders. For the calculation of hidden Markov model (HMM) parameters according to the maximum likelihood approach, HMM parameters belonging to each class are calculated by using training samples that only belong to their own classes. In order to calculate the parameters of DHMMs, not only training samples of the related class but also training samples of other classes are included in the calculation. Therefore HMM parameters that reflect a class's characteristics are more represented than other class parameters. For this aim, the approach was to use a hybrid method by adapting the Rocchio algorithm. The proposed system was used in the classification of the Doppler signals obtained from aortic and mitral heart valves of 215 subjects. The performance of this classification approach was compared with the classification performances in previous studies which used the same data set and the efficiency of the new approach was tested. The total classification accuracy of the proposed approach (95.12%) is higher than the total accuracy rate of standard DHMM (94.31%), continuous HMM (93.5%) and support vector machine (92.67%) classifiers employed in our previous studies and comparable with the performance levels of classifications using artificial neural networks (95.12%) and fuzzy‐C‐means/CHMM (95.12%).     

Prosthetic Hand Finger Control Using Fuzzy Sliding Modes

In order to improve the life quality of amputees, providing approximate manipulation ability of a human hand to that of a prosthetic hand is considered by many researchers. In this study, a biomechanical model of the index finger of the human hand is developed based on the human anatomy. Since the activation of finger bones are carried out by tendons, a tendon configuration of the index finger is introduced and used in the model to imitate the human hand characteristics and functionality. Then, fuzzy sliding mode control where the slope of the sliding surface is tuned by a fuzzy logic unit is proposed and applied to have the finger model to follow a certain trajectory. The trajectory of the finger model, which mimics the motion characteristics of the human hand, is pre-determined from the camera images of a real hand during closing and opening motion. Also, in order to check the robust behaviour of the controller, an unexpected joint friction is induced on the prosthetic finger on its way. Finally, the resultant prosthetic finger motion and the tendon forces produced are given and results are discussed.     

TEM characterization of Ge precipitates in an Al-1.6at% Ge alloy

The growth mechanism and morphology of Ge precipitates in an Al-Ge alloy was characterized by a combination of in-situ transmission electron microscopy, high-resolution transmission electron microscopy and three-dimensional electron tomography. Anisotropic growth of rod-shaped Ge precipitates was observed by in-situ transmission electron microscopy over different time periods, and faceting of the precipitates was clearly seen using high-resolution transmission electron microscopy and three-dimensional electron tomography. This anisotropic growth of rod-shaped Ge precipitates was enhanced by vacancy concentration as proposed previously, but also by surface diffusion as observed during the in-situ experiment. Furthermore, a variety of precipitate morphologies was identified by three-dimensional electron tomography.     

Detection of COVID-19 and its pulmonary stage using Bayesian hyperparameter optimization and deep feature selection methods

Since the first case of COVID-19 was reported in December 2019, many studies have been carried out on artificial intelligence for the rapid diagnosis of the disease to support health services. Therefore, in this study, we present a powerful approach to detect COVID-19 and COVID-19 findings from computed tomography images using pre-trained models using two different datasets. COVID-19, influenza A (H1N1) pneumonia, bacterial pneumonia and healthy lung image classes were used in the first dataset. Consolidation, crazy-paving pattern, ground-glass opacity, ground-glass opacity and consolidation, ground-glass opacity and nodule classes were used in the second dataset. The study consists of four steps. In the first two steps, distinctive features were extracted from the final layers of the pre-trained ShuffleNet, GoogLeNet and MobileNetV2 models trained with the datasets. In the next steps, the most relevant features were selected from the models using the Sine–Cosine optimization algorithm. Then, the hyperparameters of the Support Vector Machines were optimized with the Bayesian optimization algorithm and used to reclassify the feature subset that achieved the highest accuracy in the third step. The overall accuracy obtained for the first and second datasets is 99.46% and 99.82%, respectively. Finally, the performance of the results visualized with Occlusion Sensitivity Maps was compared with Gradient-weighted class activation mapping. The approach proposed in this paper outperformed other methods in detecting COVID-19 from multiclass viral pneumonia. Moreover, detecting the stages of COVID-19 in the lungs was an innovative and successful approach.     

Revisiting Slotted ALOHA: Density Adaptation in FANETs

Unmanned aerial vehicles have been widely used in many areas of life. They communicate with each other or infrastructure to provide ubiquitous coverage or assist cellular and sensor networks. They construct flying ad hoc networks. One of the most significant problems in such networks is communication among them over a shared medium. Using random channel access techniques is a useful solution. Another important problem is that the variations in the density of these networks impact the quality of service and introduce many challenges. This paper presents a novel density-aware technique for flying ad hoc networks. We propose Density-aware Slotted ALOHA Protocol that utilizes slotted ALOHA with a dynamic random access probability determined using network density in a distributed fashion. Compared to the literature, this paper concentrates on proposing a three-dimensional, easily traceable model and stabilize the channel utilization performance of slotted ALOHA with an optimized channel access probability to its maximum theoretical level, 1/e, where e is the Euler’s number. Monte-Carlo simulation results validate the proposed approach leveraging aggregate interference density estimator under the simple path-loss model. We compare our protocol with two existing protocols, which are Slotted ALOHA and Stabilized Slotted ALOHA. Comparison results show that the proposed protocol has 36.78% channel utilization performance; on the other hand, the other protocols have 24.74% and 30.32% channel utilization performances, respectively. Considering the stable results and accuracy, this model is practicable in highly dynamic networks even if the network is sparse or dense under higher mobility and reasonable non-uniform deployments.