Amphiphilic fluorinated block-copolymer coating for the preparation of hydrophobic porous materials

A new approach to the preparation of hydrophobic porous polymers has been proposed. Three series of porous polymers which pores equally well-absorbed as water and organic liquids (benzene and iso-octane) were synthesized by visible light polymerization from compositions based on three different dimethacrylic esters with n-butanol. Three block copolymers based on N-vinylpyrrolidone and 2,2,3,3-tetrafluoropropyl methacrylate, differing in the length of the poly-(2,2,3,3-tetrafluoropropyl methacrylate) block, were synthesized for the purpose of hydrophobization of such porous polymers. A distinctive feature of synthesized block copolymers is that they are soluble only in methanol. It has been found that the treatment of porous polymers only with 2 wt.% of block copolymer methanol solution leads to a decrease water uptake by an order of magnitude, and the absorption of organic liquids does not change. In the course of the study it was possible to obtain a hydrophobic porous polymer sample that has water contact angle θ?=?121^° and a low value of the polar component of the surface Gibbs energy (\( {\gamma}_s^p=0.2 \) mJ·m^?2). The fundamental possibility of using such material for purification of organic liquids from water is shown.

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Interaction of Gd(III) MRI contrast agents with membranes: a review of recent EPR studies

Rational development of new selective paramagnetic contrast agents (PCAs) requires a detailed understanding of their interactions with biological macromolecules. This report shows how some of these interactions can be studied with electron paramagnetic resonance (EPR) through examples of Gd³⁺ complexes interactions with model phospholipid membranes. It is shown that the spin label EPR method can be used to detect: (i) presence and possible location of lipophilic contrast agents in the model membranes, (ii) changes and distortions in membrane organization upon interaction with the PCAs, and (iii) changes in the local polarity of the bilayer and its phase behavior due to addition of Gd³⁺ complexes. This work demonstrates that interaction of Gd³⁺ complexes with phospholipid bilayers can be observed directly from changes in their continuous wave (CW) EPR spectra obtained at frequencies higher than X-band (9.5 GHz), where signals arising from aqueous and lipid-bound Gd³⁺ complexes become resolved. Analysis of frequency dependence of the effectiveg-factors of the EPR signal provides estimates of zero-field splitting (ZFS) parameter for these complexes at physiological conditions and information on how this parameter is affected by interaction with lipids. Multifrequency EPR experiments at high magnetic fields are also useful in providing data on the frequency dispersion of electronic relaxation caused mainly by a modulation of the electron-electron dipolar interaction (ZFS) of these high spin ions.     

Small RNA F6 Provides Mycobacterium smegmatis Entry into Dormancy

Regulatory small non-coding RNAs play a significant role in bacterial adaptation to changing environmental conditions. Various stresses such as hypoxia and nutrient starvation cause a reduction in the metabolic activity of Mycobacterium smegmatis, leading to entry into dormancy. We investigated the functional role of F6, a small RNA of M. smegmatis, and constructed an F6 deletion strain of M. smegmatis. Using the RNA-seq approach, we demonstrated that gene expression changes that accompany F6 deletion contributed to bacterial resistance against oxidative stress. We also found that F6 directly interacted with 5′-UTR of MSMEG_4640 mRNA encoding RpfE2, a resuscitation-promoting factor, which led to the downregulation of RpfE2 expression. The F6 deletion strain was characterized by the reduced ability to enter into dormancy (non-culturability) in the potassium deficiency model compared to the wild-type strain, indicating that F6 significantly contributes to bacterial adaptation to non-optimal growth conditions.     

Genomic Regions Associated with Fusarium Wilt Resistance in Flax

Modern flax cultivars are susceptible to many diseases; arguably, the most economically damaging of these is the Fusarium wilt fungal disease. Over the past decades international flax breeding initiatives resulted in the development of resistant cultivars. However, much remains to be learned about the mechanisms of resistance to Fusarium infection in flax. As a first step to uncover the genetic factors associated with resistance to Fusarium wilt disease, we performed a genome-wide association study (GWAS) using 297 accessions from the collection of the Federal Research Centre of the Bast Fiber Crops, Torzhok, Russia. These genotypes were infected with a highly pathogenic Fusarium oxysporum f.sp. lini MI39 strain; the wilt symptoms were documented in the course of three successive years. Six different single-locus models implemented in GAPIT3 R package were applied to a selected subset of 72,526 SNPs. A total of 15 QTNs (Quantitative Trait Nucleotides) were detected during at least two years of observation, while eight QTNs were found during all three years of the experiment. Of these, ten QTNs occupied a region of 640 Kb at the start of chromosome 1, while the remaining QTNs mapped to chromosomes 8, 11 and 13. All stable QTNs demonstrate a statistically significant allelic effect across 3 years of the experiment. Importantly, several QTNs spanned regions that harbored genes involved in the pathogen recognition and plant immunity response, including the KIP1-like protein (Lus10025717) and NBS-LRR protein (Lus10025852). Our results provide novel insights into the genetic architecture of flax resistance to Fusarium wilt and pinpoint potential candidate genes for further in-depth studies.     

Computer Modeling of Probable Decomposition Reactions: Cyclonitramines

An approach to computer synthesis and retrosynthesis of organic compounds was formulated, and the CASB (Computer-Assisted Structure Building) software for its computer implementation was created. The approach was evaluated by the example of computer generation of probable routes for reactions of homolytic decomposition. Elementary steps of homolysis reactions were modeled with the use of the “retrosynthetic” method. Each elementary reaction describes fragments that should be present in the structure and structural modifications that should be carried out to obtain reaction products. Target fragments are described in terms of production rules by specifying types of atoms, their formal charges and radical states, numbers of adjacent heteroatoms, hybridizations, etc. All possible intermediates of molecular homolysis reactions are generated by the program in a single step and then used in further search for probable pathways of decomposition during subsequent steps until the given maximum number of steps is achieved. Screening of advantageous pathways for these reactions was based on a set of empirical rules. The results obtained by the suggested approach and the corresponding program were illustrated by the example of some cyclic nitramines (RDX and HMX) and demonstrated good agreement with the experiment.     

High-intensive femtosecond singular pulses in Kerr dielectrics

The nonlinear dynamics of a high-power femtosecond singular pulse in Kerr media are analyzed numerically upon optically induced ionization. We examine the plasma inertia impact to stable propagation of optical vortices. Multifoci behavior of vortices in medium are revealed. Next we numerically demonstrate that inertial character of plasma formation provides a quasi-soliton regime of vortex propagation resistant to symmetry-breaking perturbation.     

Surface periodic domain structures for waveguide applications

We report the results of fabrication and investigations of surface periodic domain structures created by a set of quasi-point e-beam irradiations both on the Y- and X-cuts of LiNbO(3), and on Ti:LiNbO(3) and Zn:LiNbO(3) planar waveguides. Domain gratings with spatial periods from 4.75 to 7.25 μm were formed by a 25-keV e-beam. Doses from 500 to 2000 μC/cm(2) were used for different structures to estimate optimal fabrication conditions. The investigations allowed the visualization of the formed surface domain structures, estimation of their uniformity, and determination of waveguide generation of the second optical harmonic. The surface structures can be used in optical devices for the realization of quasi-phase-matched frequency conversion, which includes the creation of compact radiation sources based on waveguides.     

CYP51: A Major Drug Target in the Cytochrome P450 Superfamily

The cytochrome P540 (CYP) superfamily currently includes about 9000 proteins forming more than 800 families. The enzymes catalyze monooxygenation of a vast array of compounds and play essentially two roles. They provide biodefense (detoxification of xenobiotics, antibiotic production) and participate in biosynthesis of important endogenous molecules, particularly steroids. Based on these two roles, sterol 14/*alpha*/-demethylases (CYP51) belong to the second group of P450s. The CYP51 family, however, is very special as its members preserve strict functional conservation in enzyme activity in all biological kingdoms. At amino acid identity across the kingdoms as low as 25-30%, they all catalyze essentially the same three-step reaction of oxidative removal of the 14/*alpha*/-methyl group from the lanostane frame. This reaction is the required step in sterol biosynthesis of pathogenic microbes. We have shown that specific inhibition of protozoan CYP51 can potentially provide treatment for human trypanosomiases. Three sets of CYP51 inhibitors tested in vitro and in trypanosomal cells in this study include azoles [best results being 50% cell growth inhibition at <1 and at 1.3 muM for Trypanosoma cruzi (TC) and Trypanosoma brucei (TB), respectively], non-azole compounds (50% TC cell growth inhibition at 5 microM) and substrate analogs of the 14/*alpha*/-demethylase reaction. 32-Methylene cyclopropyl lanost-7-enol exhibited selectivity toward TC with 50% cell growth inhibition at 3 microM.     

Modification of cathode structure by introduction of CNT for air-breathing DMFC

Optimization of the structure and texture of the cathode catalyst layer for air-breathing DMFC has been studied. Application of carbon nanotubes (CNT) as an additive to the cathode catalyst layer resulted in the increase of BET surface area and porosity of the catalyst layer due to filamentous morphology of CNT. Best performance was observed at the intermediate CNT/catalyst ratio of 0.05. I–U polarization and impedance analysis indicated that the faster oxygen reduction reaction at the open cathode is responsible for the power density improvement. Excessive cathode porosity was not favorable due to the decrease of the effective ionic conductivity of the catalyst layer.