Quality Control of Human Pluripotent Stem Cell Colonies by Computational Image Analysis Using Convolutional Neural Networks

Human pluripotent stem cells are promising for a wide range of research and therapeutic purposes. Their maintenance in culture requires the deep control of their pluripotent and clonal status. A non-invasive method for such control involves day-to-day observation of the morphological changes, along with imaging colonies, with the subsequent automatic assessment of colony phenotype using image analysis by machine learning methods. We developed a classifier using a convolutional neural network and applied it to discriminate between images of human embryonic stem cell (hESC) colonies with “good” and “bad” morphological phenotypes associated with a high and low potential for pluripotency and clonality maintenance, respectively. The training dataset included the phase-contrast images of hESC line H9, in which the morphological phenotype of each colony was assessed through visual analysis. The classifier showed a high level of accuracy (89%) in phenotype prediction. By training the classifier on cropped images of various sizes, we showed that the spatial scale of ~144 μm was the most informative in terms of classification quality, which was an intermediate size between the characteristic diameters of a single cell (~15 μm) and the entire colony (~540 μm). We additionally performed a proteomic analysis of several H9 cell samples used in the computational analysis and showed that cells of different phenotypes differentiated at the molecular level. Our results indicated that the proposed approach could be used as an effective method of non-invasive automated analysis to identify undesirable developmental anomalies during the propagation of pluripotent stem cells.     

Turing instability in an economic–demographic dynamical system may lead to pattern formation on a geographical scale

Spatial distribution of the human population is distinctly heterogeneous, e.g. showing significant difference in the population density between urban and rural areas. In the historical perspective, i.e. on the timescale of centuries, the emergence of densely populated areas at their present locations is widely believed to be linked to more favourable environmental and climatic conditions. In this paper, we challenge this point of view. We first identify a few areas at different parts of the world where the environmental conditions (quantified by the temperature, precipitation and elevation) show a relatively small variation in space on the scale of thousands of kilometres. We then examine the population distribution across those areas to show that, in spite of the approximate homogeneity of the environment, it exhibits a significant variation revealing a nearly periodic spatial pattern. Based on this apparent disagreement, we hypothesize that there may exist an inherent mechanism that may lead to pattern formation even in a uniform environment. We consider a mathematical model of the coupled demographic-economic dynamics and show that its spatially uniform, locally stable steady state can give rise to a periodic spatial pattern due to the Turing instability, the spatial scale of the emerging pattern being consistent with observations. Using numerical simulations, we show that, interestingly, the emergence of the Turing patterns may eventually lead to the system collapse.     

Thermoelectric effects in superconductors

The possibility of observing thermoelectric effects in high-temperature superconductors (HTS) is discussed.I am grateful to V. Z. Kresin for an interesting discussion.     

Physico-chemical principles of preventing salts crystallization on heat-exchange surfaces

The work discusses physico-chemical grounds of conventional methods for preventing crystallization of salt on heat-exchange surfaces, and dwells upon the role of temperature and supersaturation, as well as the role of the heat-exchange surface as an initiator of calcium carbonate crystallization. The paper provides a brief summary of some methods based on reducing supersaturation of the solution with the salt getting crystallized and on a physical impact upon the solution. Particular consideration is given to a method for preventing calcium carbonate deposits, namely restructurization of the solution as initiated by magneto-hydrodynamic resonance (magnetic treatment). As a criterion for choosing a method of preventing scale formation on the heat-exchange surface, it is suggested that the relative supersaturation with calcium carbonate be taken into consideration. The limitations of and conditions for employment of some methods of preventing scale formation are also presented. The equation of a predictable dependence in increase power consumption by heat-exchange equipment on supersaturation of the solution with calcium carbonate in the surface-adjoining layer is proposed.     

Rec10- and Rec12-independent recombination in meiosis of Schizosaccharomyces pombe

The Rec10 protein, a component of the linear elements forming along sister chromatids in meiotic prophase of Schizosaccharomyces pombe, plays an important role in the activation of Rec12 for double-strand break formation, and thus the initiation of recombination between homologous chromosomes. Recombination between homologous chromosomes was moderately reduced in homozygous crosses of the C-terminal truncation mutant rec10-155 and strongly in the full deletion allele rec10-175. Both alleles were also tested in two assays for intrachromosomal recombination (PS1 and VL1) and showed only slight reductions, while deletion of rec12 led to a 13-fold reduction. The even stronger reductions in rec10 rec12 double deletion crosses indicate partially redundant functions of Rec10 and Rec12 in the initiation of intrachromosomal recombination. A low level of double-strand breaks has been detected in rec10-175 meiosis at the mbs1 hotspot of recombination, and spore viability in the double mutant was also lower than in the single-deletion mutants. Low levels of apparent crossover and conversion between homologous chromosomes in the absence of Rec12 have been quantified using a newly developed assay. The results also indicate that the functions of Rec10 differ in several respects from those of its distant homologue Red1 in Saccharomyces cerevisiae, including interactions with Hop1 and Mek1 for promotion of recombination between homologues at the expense of sister chromatid recombination.     

Invited review: Whey proteins as antioxidants and promoters of cellular antioxidant pathways

Oxidative stress contributes to cell injury and aggravates several chronic diseases. Dietary antioxidants help the body to fight against free radicals and, therefore, avoid or reduce oxidative stress. Recently, proteins from milk whey liquid have been described as antioxidants. This review summarizes the evidence that whey products exhibit radical scavenging activity and reducing power. It examines the processing and treatment attempts to increase the antioxidant bioactivity and identifies 1 enzyme, subtilisin, which consistently produces the most potent whey fractions. The review compares whey from different milk sources and puts whey proteins in the context of other known food antioxidants. However, for efficacy, the antioxidant activity of whey proteins must not only survive processing, but also upper gut transit and arrival in the bloodstream, if whey products are to promote antioxidant levels in target organs. Studies reveal that direct cell exposure to whey samples increases intracellular antioxidants such as glutathione. However, the physiological relevance of these in vitro assays is questionable, and evidence is conflicting from dietary intervention trials, with both rats and humans, that whey products can boost cellular antioxidant biomarkers.     

Structural Features and Transport Properties of La(Sr)Fe1-xNixO3-δ– Ce0.9Gd0.1O2-δ Nanocomposites—Advanced Materials for IT SOFC Cathodes

Mixed ionic?electronic conducting nanocomposites comprising complex oxides - perovskite (lanthanum-strontium nickelate-ferrite [LSFN]) and gadolinium-doped ceria (GDC) have been prepared via ultrasonic dispersion of nanocrystalline powders of LSFN_x and GDC in organic solvent with addition of surfactant, followed by drying and sintering up to 1300°C. Their structural and surface properties have been studied by x-ray diffraction, ultraviolet–visible (UV-vis) electron spectroscopy, transmission electron microscopy with elemental analysis, and x-ray photoelectron spectroscopy. Results of impedance spectroscopy, oxygen isotope exchange, O₂ temperature-programmed desorption, weight, and conductivity relaxation experiments have revealed a strong positive effect of perovskite?fluorite nanodomain interfaces in composite on the oxygen mobility and reactivity. Testing in wet H₂/air feeds for a button-size cell with functionally graded LSFN_0.4–GDC cathode layer supported on a thin YSZ layer covering Ni/YSZ cermet has demonstrated high and stable performance, promising for the practical application in the intermediate temperature range.     

Enhanced performance of FeOOH/ZnIn2S4/Au nanosheet arrays for visible light water splitting

Journal of Materials Science: Materials in Electronics - Carrier separation, charge transport, and visible light absorption are the main factors affecting the solar water splitting performance of a...     

Novel nonlinear-modulation acoustic technique for crack detection

Novel nonlinear-modulation methods for crack detection are discussed. The approach is based on the so-called cross-modulation effect consisting of the modulation transfer from an intensive, initially slowly amplitude-modulated stronger (pump) excitation to the probe signal. Advantage of this technique is a very flexible choice of the operation frequencies, since their ratio for both carriers and the modulation may be rather arbitrary. This in its turn allows one to effectively use the sample resonances in order to achieve the necessary level of the pump excitation and to ameliorate conditions for detection of the modulation sidelobes for the probe wave. Unlike higher harmonic-generation methods the initial nonlinear distortions of the pump and probe excitations (e.g. due to nonlinearities in the electronics) are not critical for this technique. In the paper we summarise results of recent test experiments that indicated high sensitivity of the new technique.     

Fluorescent dye labeled bacteriophages--a new tracer for the investigation of viral transport in porous media: 1. Introduction and characterization

A new method for the study of pathogen transport in porous media is presented. The method is based on conjugation of fluorescent dyes to target bacteriophages and application of the modified bacteriophages for tracer studies. We demonstrate that the relevant transport determining properties of Rhodamine and several fluorescein-labeled phages are practically identical to those of the native bacteriophages. The advantages of the proposed method relative to direct enumeration of bacteriophages by plaque forming unit method, turbidity, fluorescent microspheres, and other alternative tracers are discussed. Notable advantages include simple quantitation by optical methods, unbiased signals even when virus aggregates are formed, and the ability to decouple inactivation kinetics from transport phenomena. Additionally, the signal reflects the removal and transport of the studied microorganism and not a surrogate.