Just how insoluble are monoterpenes?

Prior generalizations about the ecological roles of monoterpenes may be misleading if based on the presumed insolubility of monoterpenes in water. We determined the aqueous solubility of 31 biologically active monoterpenes by gas chromatography. While hydrocarbons were of low solubility (< 35 ppm), oxygenated monoterpenes exhibited solubilities one or two orders of magnitude higher, with ranges of 155–6990 ppm for ketones and of 183–1360 ppm for alcohols. Many monoterpenes are phytotoxic in concentrations under 100 ppm, well below the saturated aqueous concentrations of oxygenated monoterpenes. Therefore, even dilute, unsaturated solutions of monoterpenes, occurring naturally in plant tissues and soil solutions, may act as potent biological inhibitors.     

First evidence of grass carp recruitment in the Great Lakes Basin

We use aging techniques, ploidy analysis, and otolith microchemistry to assess whether four grass carp Ctenopharyngodon idella captured from the Sandusky River, Ohio were the result of natural reproduction within the Lake Erie Basin. All four fish were of age 1 +. Multiple lines of evidence indicate that these fish were not aquaculture-reared and that they were most likely the result of successful reproduction in the Sandusky River. First, at least two of the fish were diploid; diploid grass carp cannot legally be released in the Great Lakes Basin. Second, strontium:calcium (Sr:Ca) ratios were elevated in all four grass carp from the Sandusky River, with elevated Sr:Ca ratios throughout the otolith transect, compared to grass carp from Missouri and Arkansas ponds. This reflects the high Sr:Ca ratio of the Sandusky River, and indicates that these fish lived in a high-strontium environment throughout their entire lives. Third, Sandusky River fish were higher in Sr:Ca ratio variability than fish from ponds, reflecting the high but spatially and temporally variable strontium concentrations of southwestern Lake Erie tributaries, and not the stable environment of pond aquaculture. Fourth, Sr:Ca ratios in the grass carp from the Sandusky River were lower in their 2011 growth increment (a high water year) than the 2012 growth increment (a low water year), reflecting the observed inverse relationship between discharge and strontium concentration in these rivers. We conclude that these four grass carp captured from the Sandusky River are most likely the result of natural reproduction within the Lake Erie Basin.     

HiCOO: Hierarchical cooperation for scalable communication in Global Address Space programming models on Cray XT systems

Global Address Space (GAS) programming models enable a convenient, shared-memory style addressing model. Typically this is realized through one-sided operations that can enable asynchronous communication and data movement. With the size of petascale systems reaching 10,000s of nodes and 100,000s of cores, the underlying runtime systems face critical challenges in (1) scalably managing resources (such as memory for communication buffers), and (2) gracefully handling unpredictable communication patterns and any associated contention. For any solution that addresses these resource scalability challenges, equally important is the need to maintain the performance of GAS programming models. In this paper, we describe a Hierarchical COOperation (HiCOO) architecture for scalable communication in GAS programming models. HiCOO formulates a cooperative communication architecture: with inter-node cooperation amongst multiple nodes (a.k.a multinode) and hierarchical cooperation among multinodes that are arranged in various virtual topologies. We have implemented HiCOO for a popular GAS runtime library, Aggregate Remote Memory Copy Interface (ARMCI). By extensively evaluating different virtual topologies in HiCOO in terms of their impact to memory scalability, network contention, and application performance, we identify MFCG as the most suitable virtual topology. The resulting HiCOO architecture is able to realize scalable resource management and achieve resilience to network contention, while at the same time maintaining or enhancing the performance of scientific applications. In one case, it reduces the total execution time of an NWChem application by 52%.     

A system for debugging via online tracing and dynamic slicing

Dynamic slicing is a promising trace based technique that helps programmers in the process of debugging. In order to debug a failed run, dynamic slicing requires the dynamic dependence graph (DDG) information for that particular run. The two major challenges involved in utilizing dynamic slicing as a debugging technique are the efficient computation of the DDG and the efficient computation of the dynamic slice, given the DDG. In this paper, we present an efficient debugger, which first computes the DDG efficiently while the program is executing; dynamic slicing is later performed efficiently on the computed DDG, on demand. To minimize program slowdown during the online computation of DDG, we make the design decision of not outputting the computed dependencies to a file, instead, storing them in memory in a specially allocated fixed size circular buffer. The size of the buffer limits the length of the execution history that can be stored. To maximize the execution history that can be maintained, we introduce optimizations to eliminate the storage of most of the generated dependencies, at the same time ensuring that those that are stored are sufficient to capture the bug. Experiments conducted on CPU‐intensive programs show that our optimizations are able to reduce the trace rate from 16 to 0.8 bytes per executed instruction. This enables us to store the dependence trace history for a window of 20 million executed instructions in a 16‐MB buffer. Our debugger is also very efficient, yielding slicing times of around a second, and only slowing down the execution of the program by a factor of 19 during the online tracing step. Using recently proposed architectural support for monitoring, we are also able to handle multithreaded programs running on multicore processors. Copyright © 2011 John Wiley & Sons, Ltd.     

Tracking mobile users in wireless networks via semi-supervised colocalization

Recent years have witnessed the growing popularity of sensor and sensor-network technologies, supporting important practical applications. One of the fundamental issues is how to accurately locate a user with few labeled data in a wireless sensor network, where a major difficulty arises from the need to label large quantities of user location data, which in turn requires knowledge about the locations of signal transmitters or access points. To solve this problem, we have developed a novel machine learning-based approach that combines collaborative filtering with graph-based semi-supervised learning to learn both mobile users' locations and the locations of access points. Our framework exploits both labeled and unlabeled data from mobile devices and access points. In our two-phase solution, we first build a manifold-based model from a batch of labeled and unlabeled data in an offline training phase and then use a weighted k-nearest-neighbor method to localize a mobile client in an online localization phase. We extend the two-phase colocalization to an online and incremental model that can deal with labeled and unlabeled data that come sequentially and adapt to environmental changes. Finally, we embed an action model to the framework such that additional kinds of sensor signals can be utilized to further boost the performance of mobile tracking. Compared to other state-of-the-art systems, our framework has been shown to be more accurate while requiring less calibration effort in our experiments performed on three different testbeds.     

Texture analysis of poly-adenylated mRNA staining following global brain ischemia and reperfusion

Texture analysis provides a means to quantify complex changes in microscope images. We previously showed that cytoplasmic poly-adenylated mRNAs form mRNA granules in post-ischemic neurons and that these granules correlated with protein synthesis inhibition and hence cell death. Here we utilized the texture analysis software MaZda to quantify mRNA granules in photomicrographs of the pyramidal cell layer of rat hippocampal region CA3 around 1 h of reperfusion after 10 min of normothermic global cerebral ischemia. At 1 h reperfusion, we observed variations in the texture of mRNA granules amongst samples that were readily quantified by texture analysis. Individual sample variation was consistent with the interpretation that animal-to-animal variations in mRNA granules reflected the time-course of mRNA granule formation. We also used texture analysis to quantify the effect of cycloheximide, given either before or after brain ischemia, on mRNA granules. If administered before ischemia, cycloheximide inhibited mRNA granule formation, but if administered after ischemia did not prevent mRNA granulation, indicating mRNA granule formation is dependent on dissociation of polysomes. We conclude that texture analysis is an effective means for quantifying the complex morphological changes induced in neurons by brain ischemia and reperfusion.     

The interplay of memory and judgment processes in effects of aging on hindsight bias.

Hindsight bias is the phenomenon that after people are presented with the correct answer to a question, their judgment regarding their own past answer to this question is biased toward the correct answer. In three experiments, younger and older adults gave numerical responses to general-knowledge questions and later attempted to recall their responses. For some questions, the correct answer was provided during recall (Experiment 1) or before recall (Experiments 2 and 3). Multinomial model-based analyses show age differences in both recollection bias and reconstruction bias when the correct judgment was in working memory during the recall phase. The authors discuss implications for theories of cognitive aging and theories of hindsight bias. (PsycINFO Database Record (c) 2010 APA, all rights reserved)     

Radio frequency identification (RFID) performance: the effect of tag orientation and package contents

The objective of this research was to determine the relationship between different product types and tag orientations on the readability of RFID tags on shipping containers in a palletload that is driven through a portal type reader. This research finds that the content of packages can dramatically reduce the read rate. Only 25% of the tags on shipping containers containing water‐filled bottles could be read. Rice‐filled jars had a higher read rate (80.6%). Even empty boxes did not have a 100% read rate. For the variables without appreciable package contents, only 74–79% of loads had all of their tags read. The orientation of the tag does make a difference, especially when coupled with a filled package between it and the reader antennae. Tags facing outwards, towards the reader antennae, had the highest likelihood of a successful read. When tags for the boxes of water‐filled bottles were all facing downwards, no tags were read. Supply chain managers need to understand these limitations of the technology and find ways to overcome them before RFID can be successfully implemented in supply chains. Copyright © 2005 John Wiley & Sons, Ltd.     

Predicting Future Antisocial Personality Disorder in Males From a Clinical Assessment in Childhood.

It is essential to identify childhood predictors of adult antisocial personality disorder (APD) to target early prevention. It has variously been hypothesized that APD is predicted by childhood conduct disorder (CD), attention-deficit/hyperactivity disorder (ADHD), or both disorders. To test these competing hypotheses, the authors used data from a single childhood diagnostic assessment of 163 clinic-referred boys to predict future APD during early adulthood. Childhood Diagnostic and Statistical Manual of Mental Disorders (3rd ed., rev.; American Psychiatric Association, 1987) CD, but not ADHD, significantly predicted the boys' subsequent APD. An interaction between socioeconomic status (SES) and CD indicated that CD predicted APD only in lower SES families, however. Among children who met criteria for CD, their number of covert but not overt CD symptoms improved prediction of future APD, controlling for SES. (PsycINFO Database Record (c) 2010 APA, all rights reserved)