Enzyme structure with two catalytic sites for double-sieve selection of substrate

High-fidelity transfers of genetic information in the central dogma can be achieved by a reaction called editing. The crystal structure of an enzyme with editing activity in translation is presented here at 2.5 angstroms resolution. The enzyme, isoleucyl-transfer RNA synthetase, activates not only the cognate substrate L-isoleucine but also the minimally distinct L-valine in the first, aminoacylation step. Then, in a second, "editing" step, the synthetase itself rapidly hydrolyzes only the valylated products. For this two-step substrate selection, a "double-sieve" mechanism has already been proposed. The present crystal structures of the synthetase in complexes with L-isoleucine and L-valine demonstrate that the first sieve is on the aminoacylation domain containing the Rossmann fold, whereas the second, editing sieve exists on a globular beta-barrel domain that protrudes from the aminoacylation domain.     

Flexible multibody approach in forward dynamic simulation of locomotive strains in human skeleton with flexible lower body bones

A method for bone strain estimation is examined in this article. The flexibility of a single bone in an otherwise rigid human skeleton model has been studied previously by various authors. However, in the previous studies, the effect of the flexibility of multiple bones on the musculoskeletal model behavior was ignored. This study describes a simulation method that can be used to estimate the bone strains at both tibias and femurs of a 65-year-old Caucasian male subject. The verification of the method is performed by the comparison of the results with other studies available in literature. The results of the study show good correlation with the results of previous empirical studies. A damping effect of the flexible bones on the model is also studied in this paper.     

Efficient coupling of multibody software with numerical computing environments and block diagram simulators

Simulation of complex mechatronic systems like an automobile, involving mechanical components as well as actuators and active electronic control devices, can be accomplished by combining tools that deal with the simulation of the different subsystems. In this sense, it is often desirable to couple a multibody simulation software (for the mechanical simulation) with external numerical computing environments and block diagram simulators (for the modeling and simulation of nonmechanical components).     

New dissimilarity measure for recognizing noisy subsequence trees

Tree is a data structure used to express various objects such as semistructured data and genes. When objects are represented as trees, computing tree similarity is essential for pattern recognition and retrieval. This paper considers the noisy subsequence tree recognition problem whose purpose is to recognize the original tree, given its noisy subsequence tree. Previous research on this problem relied on constrained tree edit distance to measure the dissimilarity. However, the number of relabelings must be predetermined to compute it. This paper proposes a new dissimilarity measure for this problem. Our dissimilarity measure is obtained by counting the node edit operations included in the unit‐cost tree edit distance that contribute to the matching of node labels. The number of relabelings need not be specified to compute our dissimilarity measure. Moreover, our measure achieves more accurate recognition performance and faster execution speed than the constrained tree edit distance. Our measure is also useful to solve the tree inclusion problem which is the problem of deciding whether a tree includes another tree and shows the extent of approximate tree inclusion when a tree incompletely includes another tree. © 2011 Wiley Periodicals, Inc.     

Parametric polynomial spectral factorization using the sum of roots and its application to a control design problem

This paper presents an algebraic approach to polynomial spectral factorization, an important mathematical tool in signal processing and control. The approach exploits an intriguing relationship between the theory of Gröbner bases and polynomial spectral factorization which can be observed through the sum of roots, and allows us to perform polynomial spectral factorization in the presence of real parameters. It is discussed that parametric polynomial spectral factorization enables us to express quantities such as the optimal cost in terms of parameters and the sum of roots. Furthermore an optimization method over parameters is suggested that makes use of the results from parametric polynomial spectral factorization and also employs two quantifier elimination techniques. This proposed approach is demonstrated in a numerical example of a particular control problem.     

Digital Game Dynamics Preferences and Player Types

In this study, we examine digital game preferences by identifying game dynamics, i.e. player–game interaction modes, of 700 contemporary digital games, and players' (N = 1717) desire to play games with specific types of dynamics. Based on statistical analysis of the data, 5 game dynamics preference categories (“assault,” “manage,” “journey,” “care,” and “coordinate”) and 7 player types were revealed. The results show that identifying player types requires including both preferred and undesired game dynamics categories in the analysis. The findings unveil digital gaming as a more multifaceted phenomenon than common stereotypes suggest. The original game preferences model we present in this study can be conceptualized as a complementary approach for motivations to play and player behavior studies.     

Viscosity of Gaseous Mixtures of HFC-125 + Propane from 298.15 to 423.15 K at Pressures to 6.7 MPa

This paper reports experimental results for the viscosity of gaseous mixtures of HFC-125 (pentafluoroethane) + propane. The measurements were carried out with an oscillating-disk viscometer of the Maxwell type at temperatures from 298.15 to 423.15 K. The viscosity was measured for two mixtures containing 50.11 and 75.03 mol% HFC-125 in propane. The viscosity at normal pressure was analyzed with the extended law of corresponding states developed by Kestin et al., and the scaling parameters were obtained for unlike-pair interactions between HFC-125 and propane. The modified Enskog theory developed by Vesovic and Wakeham was applied to predict the viscosity for the binary gaseous mixtures under pressure. From comparisons between experimental results and calculated values of the HFC-125 + propane system, it should be concluded that the Vesovic-Wakeham method gives reliable predictions for the viscosity of a gaseous mixture containing both polar and nonpolar compounds.     

Viscosity of Alternative Refrigerants R407C and R407E in the Vapor Phase from 298.15 to 423.15 K

This paper presents new measurements of the viscosity of gaseous R407C (23 mass% HFC-32, 25 mass% HFC-125, 52 mass% HFC-143a) and R407E (25 mass% HFC-32, 15 mass% HFC-125, 60 mass% HFC-143a). The measurements were carried out with an oscillating-disk viscometer of the Maxwell type at temperatures from 298.15 to 423.15 K. The densities of these two fluid mixtures were calculated with the equation-of-state model in REFPROP. The viscosity at normal pressures was analyzed with the extended law of corresponding states developed by Kestin et al., and the scaling parameters needed in the analysis were obtained from our previous studies for the viscosity of the binary mixtures consisting of HFC-32, HFC-125, and HFC-134a. The modified Enskog theory developed by Vesovic and Wakeham (V-W method) was applied to predict the viscosity for the ternary gaseous HFC mixtures under pressure. As for the calculation of pseudo-radial distribution functions in mixtures, a method based on the equation of state for hard-sphere fluid mixtures proposed by Carnahan-Starling was applied. It was found that the V-W method can predict the viscosity of R407C and R407E without any additional parameters for the ternary mixture.     

Design and fabrication of a length-extensional mode rectangular X-cut quartz resonator with zero temperature coefficient.

Rectangular X-cut quartz crystal resonators with cut angles theta > 5.0 degrees and aspect ratios Rzy (= width 2z0/length 2y0) from 0.3 to 0.5 are investigated. The resonators oscillate mode is a length-extensional mode. A semiempirical frequency equation was derived from the stress expressed in terms of the trigonometric and the hyperbolic transcendental functions with constants estimated by the regression curve fit to the stress simulated by the finite-element method (FEM). Contours on which a point satisfies a zero first order temperature coefficient condition are shown in a cut angle theta and Rzy diagram. We proved that a fabricated resonator with Rzy = 0.400 and theta = 16.0 degrees, whose design parameter is located in the area of the contour, had a zero temperature coefficient.     

Preparation of Laminin-apatite-polymer Composites Using Metastable Calcium Phosphate Solutions

1Introduction Themostimportantrequirementofapercutaneous deviceisthepreventionofbacterialinfectionthroughtheinterfacebetweenthematerialandtheskin.Therefore,a percutaneousdevicehastoadherefirmlytoskintissueandpreventepidermaldowngrowth.Previously,Aokietalp…